Prupe.2G047800_v2.0.a1

IGR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0007253
Physical Location & Seq
Forward (+)
5495225 .. 5498717
3493 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G047800.1

Sequence Viewer

Length: 327 bp
ATGGCATGGAGGCAAATGCTATTCAACTCAAGAGCAATTTTGGGACCATATTTAGCAACCGGATCCGCCAGATTCTCCACAAAATCAAACCCATACCTAGTGAAAGTTGGAATACCAGAGTTTTTGAATGGAATTGGCAATGGAGTGGAATCCCATGTGGCCAAGCTTGAAGCTGAGATTGGTGACTTCCAAAAGCTGCTTGTCACTCGTACTCTCAAGCTGAAGAAACTTGGTGTCCCTTGCAAACATAGGAAGTTGATCTTGAAATACACCCACAAGTATAGACTGGGACTCTGGAGACCACTAGCTCAGGCGATCAAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IGR

Protein Analysis

109

Amino Acids

12.19

Weight (kDa)

10.45

Isoelectric Point (pI)

11.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 66
AclWI GGATC 2 cut(s) 57, 70
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 211
AgsI TTSAA 4 cut(s) 25, 127, 170, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 5 cut(s) 166, 173, 196, 220, 308
AluI AGCT 5 cut(s) 166, 173, 196, 220, 308
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 2 cut(s) 57, 70
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 44
BalI TGGCCA 1 cut(s) 161
BamHI GGATCC 1 cut(s) 62
BbvI GCAGC 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 292
BfaI CTAG 2 cut(s) 98, 305
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 45, 64
BmrI ACTGGG 1 cut(s) 296
BmuI ACTGGG 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 309
BpuEI CTTGAG 2 cut(s) 13, 200
BsaI GGTCTC 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 291
Bse3DI GCAATG 1 cut(s) 145
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 2 cut(s) 165, 323
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 183
BshFI GGCC 1 cut(s) 161
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 3 cut(s) 57, 221, 303
BsmAI GTCTC 1 cut(s) 292
BsmFI GGGAC 3 cut(s) 57, 221, 303
BsnI GGCC 1 cut(s) 161
Bso31I GGTCTC 1 cut(s) 292
Bsp143I GATC 3 cut(s) 62, 258, 315
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 2 cut(s) 166, 322
BspLI GGNNCC 2 cut(s) 45, 64
BspPI GGATC 2 cut(s) 57, 70
BspTNI GGTCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 1 cut(s) 291
BssMI GATC 3 cut(s) 62, 258, 315
BstDEI CTNAG 3 cut(s) 174, 309, 324
BstKTI GATC 3 cut(s) 65, 261, 318
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 3 cut(s) 62, 258, 315
BstV1I GCAGC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 44
Csp6I GTAC 1 cut(s) 210
CviAII CATG 2 cut(s) 6, 155
CviJI RGCY 6 cut(s) 161, 166, 173, 196, 220, 308
CviKI_1 RGCY 6 cut(s) 161, 166, 173, 196, 220, 308
CviQI GTAC 1 cut(s) 210
DdeI CTNAG 3 cut(s) 174, 309, 324
DpnI GATC 3 cut(s) 64, 260, 317
DpnII GATC 3 cut(s) 62, 258, 315
EaeI YGGCCR 1 cut(s) 159
EciI GGCGGA 1 cut(s) 55
Eco31I GGTCTC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 242
FaeI CATG 2 cut(s) 9, 158
FaiI YATR 6 cut(s) 7, 49, 94, 156, 249, 282
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 3 cut(s) 57, 221, 303
FatI CATG 2 cut(s) 5, 154
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 2 cut(s) 98, 305
GluI GCNGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 60
Hin1II CATG 2 cut(s) 9, 158
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 3 cut(s) 72, 149, 291
HpaII CCGG 1 cut(s) 60
HphI GGTGA 1 cut(s) 194
Hpy188III TCNNGA 3 cut(s) 30, 262, 295
HpyCH4V TGCA 1 cut(s) 243
HpyF3I CTNAG 3 cut(s) 174, 309, 324
Hsp92II CATG 2 cut(s) 9, 158
Kzo9I GATC 3 cut(s) 62, 258, 315
LpnPI CCDG 6 cut(s) 73, 82, 129, 272, 280, 296
Lsp1109I GCAGC 1 cut(s) 183
MaeI CTAG 2 cut(s) 98, 305
MaeIII GTNAC 2 cut(s) 182, 202
MalI GATC 3 cut(s) 64, 260, 317
MboI GATC 3 cut(s) 62, 258, 315
MboII GAAGA 1 cut(s) 235
MflI RGATCY 1 cut(s) 62
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 2 cut(s) 36, 132
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 1 cut(s) 3
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 161
MspI CCGG 1 cut(s) 60
NdeII GATC 3 cut(s) 62, 258, 315
NlaIII CATG 2 cut(s) 9, 158
NlaIV GGNNCC 2 cut(s) 45, 64
NmuCI GTSAC 2 cut(s) 182, 202
PfeI GAWTC 2 cut(s) 72, 149
PkrI GCNGC 1 cut(s) 198
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 45, 64
PspPI GGNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 211
RsaNI GTAC 1 cut(s) 210
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 62, 258, 315
Sau96I GGNCC 1 cut(s) 44
SchI GAGTC 1 cut(s) 285
SetI ASST 6 cut(s) 99, 168, 175, 198, 222, 310
SinI GGWCC 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 28, 215
SmoI CTYRAG 2 cut(s) 28, 215
Sse9I AATT 2 cut(s) 36, 132
SsiI CCGC 1 cut(s) 66
SspMI CTAG 2 cut(s) 98, 305
TasI AATT 2 cut(s) 36, 132
TfiI GAWTC 2 cut(s) 72, 149
TseFI GTSAC 2 cut(s) 182, 202
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 2 cut(s) 182, 202
VpaK11BI GGWCC 1 cut(s) 44
XspI CTAG 2 cut(s) 98, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.