Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007253

Physical Location & Seq

Genomic Coordinates Forward (+)

4458743 .. 4460835

Gene Structure 2093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G062500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCATGGAGGCAAATATTATTCAGCACAAGAGCTATTTTGGAACCATATTCAACAACCGGGTCTGCCAAATTCTCCACCAAATCAAACCCATACCTAGTGAAGGTTGGAATACCAGAGTTTCTGAATGGAATTGGCAATGGTGTGGAATCCCATGTGTCCAAGCTTGAATCTGAGATTGGTGATTTCCAAAAGCTGCTTGTCACTCGCACTCTCAAGCTTAAGAAACTTGGCATCCCTTGCAAACACAGGAAGCTGATCTTAAAATACACCCACAAGTATAGACTGGGACTCTGGAGGCCTCGAGCCCAAGCGGTCAAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IGR

Protein Analysis

109

Amino Acids

12.28

Weight (kDa)

10.37

Isoelectric Point (pI)

13.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05810 AT3G05810
fragaria_vesca	FvH4_6g32060 FvH4_6g32060 FvH4_6g32060
malus_domestica	MD07G1055000.v1.1 MD10G1090000.v1.1 MD15G1427600.v1.1
prunus_persica	Prupe.2G047800_v2.0.a1 Prupe.2G047800_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1
pyrus_communis	pycom07g04320 pycom10g07350
rosa_chinensis	RchiOBHm_Chr2g0139741
rosa_laevigata	RLG00000019829
rosa_multiflora	Rmu_sc0000545.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105240
rosa_rugosa	Rorug02G0359500 Rorug02G0359600
rosa_samantha	Rh2AG409300 Rh2BG419700 Rh2CG395600
rosa_wichuraiana	Rw2G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	103
AflII	CTTAAG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	54, 170
AjuI	GAANNNNNNNTTGG	2 cut(s)	162, 194
AluBI	AGCT	5 cut(s)	35, 166, 196, 220, 256
AluI	AGCT	5 cut(s)	35, 166, 196, 220, 256
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	196
ApoI	RAATTY	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	183
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	2 cut(s)	98, 325
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	61
BmeT110I	CYCGRG	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	296
BmsI	GCATC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	296
BpmI	CTGGAG	1 cut(s)	316
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	1 cut(s)	145
BseGI	GGATG	1 cut(s)	234
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	183
BshFI	GGCC	1 cut(s)	301
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	103
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	301
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	45
BspTI	CTTAAG	1 cut(s)	221
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	221
BstAPI	GCANNNNNTGC	1 cut(s)	240
BstDEI	CTNAG	1 cut(s)	174
BstENI	CCTNNNNNAGG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	59
BstV1I	GCAGC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	234
CviAII	CATG	2 cut(s)	6, 155
CviJI	RGCY	7 cut(s)	35, 166, 196, 220, 256, 301, 308
CviKI_1	RGCY	7 cut(s)	35, 166, 196, 220, 256, 301, 308
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eco147I	AGGCCT	1 cut(s)	301
Eco24I	GRGCYC	1 cut(s)	310
Eco88I	CYCGRG	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	310
FaeI	CATG	2 cut(s)	9, 158
FaiI	YATR	5 cut(s)	7, 49, 94, 156, 282
FalI	AAGNNNNNCTT	2 cut(s)	245, 277
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	5, 154
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	221
FriOI	GRGCYC	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	197
FspBI	CTAG	2 cut(s)	98, 325
GluI	GCNGC	1 cut(s)	197
GsuI	CTGGAG	1 cut(s)	316
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	60
Hin1II	CATG	2 cut(s)	9, 158
HindIII	AAGCTT	2 cut(s)	164, 218
HinfI	GANTC	3 cut(s)	149, 170, 291
HpaII	CCGG	1 cut(s)	60
HphI	GGTGA	1 cut(s)	194
Hpy188I	TCNGA	2 cut(s)	126, 175
Hpy188III	TCNNGA	1 cut(s)	295
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	1 cut(s)	240
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	9, 158
Kzo9I	GATC	1 cut(s)	258
LpnPI	CCDG	5 cut(s)	73, 129, 235, 272, 280
Lsp1109I	GCAGC	1 cut(s)	183
LweI	GCATC	1 cut(s)	243
MaeI	CTAG	2 cut(s)	98, 325
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	2 cut(s)	71, 132
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	3 cut(s)	3, 291, 312
MseI	TTAA	2 cut(s)	222, 263
MspCI	CTTAAG	1 cut(s)	221
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	240
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	9, 158
NlaIV	GGNNCC	1 cut(s)	45
NmuCI	GTSAC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	303
PceI	AGGCCT	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	149, 170
PkrI	GCNGC	1 cut(s)	198
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PspN4I	GGNNCC	1 cut(s)	45
PspXI	VCTCGAGB	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	222, 263
SatI	GCNGC	1 cut(s)	197
Sau3AI	GATC	1 cut(s)	258
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	7 cut(s)	37, 99, 108, 168, 198, 222, 258
SfaNI	GCATC	1 cut(s)	243
Sfr274I	CTCGAG	1 cut(s)	303
SlaI	CTCGAG	1 cut(s)	303
SmlI	CTYRAG	3 cut(s)	215, 221, 303
SmoI	CTYRAG	3 cut(s)	215, 221, 303
Sse9I	AATT	2 cut(s)	71, 132
SseBI	AGGCCT	1 cut(s)	301
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	1 cut(s)	18
SspMI	CTAG	2 cut(s)	98, 325
StuI	AGGCCT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	59
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	71, 132
TfiI	GAWTC	2 cut(s)	149, 170
Tru1I	TTAA	2 cut(s)	222, 263
Tru9I	TTAA	2 cut(s)	222, 263
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	196
Tsp45I	GTSAC	1 cut(s)	202
Vha464I	CTTAAG	1 cut(s)	221
XagI	CCTNNNNNAGG	1 cut(s)	101
XapI	RAATTY	1 cut(s)	71
XhoI	CTCGAG	1 cut(s)	303
XspI	CTAG	2 cut(s)	98, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.