Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0007253

Physical Location & Seq

Genomic Coordinates Reverse (-)

3730779 .. 3732682

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g04320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTTTCGACCCCGGGGTTGGCCAGATTCTCCACCAAATCAAACCCATACCTAGTGAAAGTTGGGATACCAGAGTTTTTGAATGGCATTGGCAATGGAGTGGAATCCCATGTGACCAAGCTTGAGTCTGAGATCGGAGACTTCCAAAAGTTGCTTGTCATTCGTACTCTCAGGCTGAAGAAACTTGGCGTCCCTTGCAAGCATAGGAAGCTCATCTTGAAACACACTCACAAGTATAGGCTAGGACTCTGGAGGCCTCGAGCTCAGCCCGTCAAACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IGR

Protein Analysis

94

Amino Acids

10.59

Weight (kDa)

10.67

Isoelectric Point (pI)

16.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05810 AT3G05810
fragaria_vesca	FvH4_6g32060 FvH4_6g32060 FvH4_6g32060
malus_domestica	MD07G1055000.v1.1 MD10G1090000.v1.1 MD15G1427600.v1.1
prunus_persica	Prupe.2G047800_v2.0.a1 Prupe.2G047800_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1 Prupe.3G062500_v2.0.a1
pyrus_communis	pycom07g04320 pycom10g07350
rosa_chinensis	RchiOBHm_Chr2g0139741
rosa_laevigata	RLG00000019829
rosa_multiflora	Rmu_sc0000545.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105240
rosa_rugosa	Rorug02G0359500 Rorug02G0359600
rosa_samantha	Rh2AG409300 Rh2BG419700 Rh2CG395600
rosa_wichuraiana	Rw2G033430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgsI	TTSAA	2 cut(s)	82, 220
AluBI	AGCT	3 cut(s)	121, 211, 263
AluI	AGCT	3 cut(s)	121, 211, 263
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	132
Ama87I	CYCGRG	2 cut(s)	13, 258
AoxI	GGCC	2 cut(s)	21, 254
AsuC2I	CCSGG	2 cut(s)	14, 15
AvaI	CYCGRG	2 cut(s)	13, 258
BaeI	ACNNNNGTAYC	2 cut(s)	59, 92
BalI	TGGCCA	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	265
BciVI	GTATCC	1 cut(s)	60
BcnI	CCSGG	2 cut(s)	14, 15
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	3 cut(s)	53, 242, 280
BfuI	GTATCC	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	14, 15
BmeT110I	CYCGRG	2 cut(s)	13, 258
BmrFI	CCNGG	2 cut(s)	14, 15
BpmI	CTGGAG	1 cut(s)	271
Bpu1102I	GCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	2 cut(s)	14, 15
BsaHI	GRCGYC	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	12, 13, 14
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	100
BseDI	CCNNGG	3 cut(s)	12, 13, 14
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	3 cut(s)	120, 184, 278
BshFI	GGCC	2 cut(s)	23, 256
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	2 cut(s)	13, 258
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	176
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	23, 256
BsoBI	CYCGRG	2 cut(s)	13, 258
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	264
BspANI	GGCC	2 cut(s)	23, 256
BspCNI	CTCAG	3 cut(s)	121, 183, 277
BsrDI	GCAATG	1 cut(s)	100
BssECI	CCNNGG	3 cut(s)	12, 13, 14
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	1 cut(s)	189
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	200
BstDEI	CTNAG	3 cut(s)	129, 170, 264
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	195, 208
BstSCI	CCNGG	2 cut(s)	12, 13
BsuI	GTATCC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	23, 256
Cac8I	GCNNGC	1 cut(s)	200
Cfr9I	CCCGGG	1 cut(s)	13
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	165
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	8 cut(s)	23, 121, 175, 211, 241, 256, 263, 268
CviKI_1	RGCY	8 cut(s)	23, 121, 175, 211, 241, 256, 263, 268
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	129, 170, 264
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
EaeI	YGGCCR	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	263
Eco147I	AGGCCT	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	2 cut(s)	13, 258
EcoICRI	GAGCTC	1 cut(s)	263
EcoT38I	GRGCYC	1 cut(s)	265
FaeI	CATG	1 cut(s)	113
FaiI	YATR	4 cut(s)	49, 111, 204, 237
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	265
FspBI	CTAG	3 cut(s)	53, 242, 280
GsuI	CTGGAG	1 cut(s)	271
HaeIII	GGCC	2 cut(s)	23, 256
HapII	CCGG	1 cut(s)	14
HgaI	GACGC	1 cut(s)	178
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	113
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	4 cut(s)	27, 104, 125, 246
HpaII	CCGG	1 cut(s)	14
Hpy188I	TCNGA	2 cut(s)	130, 137
Hpy188III	TCNNGA	2 cut(s)	217, 250
HpyCH4V	TGCA	1 cut(s)	198
HpyF10VI	GCNNNNNNNGC	2 cut(s)	195, 208
HpyF3I	CTNAG	3 cut(s)	129, 170, 264
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	1 cut(s)	113
Kzo9I	GATC	1 cut(s)	132
LpnPI	CCDG	5 cut(s)	27, 37, 84, 157, 235
MaeI	CTAG	3 cut(s)	53, 242, 280
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	23
MluNI	TGGCCA	1 cut(s)	23
MlyI	GAGTC	2 cut(s)	134, 240
MnlI	CCTC	2 cut(s)	246, 267
Mox20I	TGGCCA	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	23
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	14, 15
MwoI	GCNNNNNNNGC	2 cut(s)	195, 208
NciI	CCSGG	2 cut(s)	14, 15
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	258
PceI	AGGCCT	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	27, 104
PleI	GAGTC	2 cut(s)	133, 240
PpsI	GAGTC	2 cut(s)	133, 240
Psp124BI	GAGCTC	1 cut(s)	265
PspXI	VCTCGAGB	1 cut(s)	258
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SacI	GAGCTC	1 cut(s)	265
Sau3AI	GATC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	134, 240
ScrFI	CCNGG	2 cut(s)	14, 15
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	4 cut(s)	54, 123, 213, 265
Sfr274I	CTCGAG	1 cut(s)	258
SlaI	CTCGAG	1 cut(s)	258
SmaI	CCCGGG	1 cut(s)	15
SmlI	CTYRAG	2 cut(s)	122, 258
SmoI	CTYRAG	2 cut(s)	122, 258
SseBI	AGGCCT	1 cut(s)	256
SspMI	CTAG	3 cut(s)	53, 242, 280
SstI	GAGCTC	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	2 cut(s)	12, 13
TaqI	TCGA	2 cut(s)	8, 259
TfiI	GAWTC	2 cut(s)	27, 104
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspMI	CCCGGG	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	258
XmaI	CCCGGG	1 cut(s)	13
XspI	CTAG	3 cut(s)	53, 242, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.