AT3G06130

cellular transition metal ion homeostasis

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
1852808 .. 1855197
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06130.1

Sequence Viewer

Length: 1422 bp
ATGAGTAAAGAAGAGTTCATGAAGATCCAGACTTGTGTTCTTAAAGTGAACATACACTGTGATGGCTGTAAGCAGAAAGTCAAGAAAATCTTGCAGAAAATCGAAGGTGTTTTCACGACCAAGATTGACTCAGAGCAAGGGAAAGTGACTGTCTCTGGGAGCGTAGATCCTTCAGTTCTCATCAAGAAGCTCGCCAAATCTGGTAAACATGCTGAAATCTGGGGAGCTCCAAAGGGTAACAACAATCCCAATCAGTCCCAAATGGCCAATCAGTTTAAGGGAATGCAGATTGACCATGGAAAAGCCGGAGGCGGTGGTGGCGGAAACAATAATAACAACAAGAAAGGCCAGAAAAACGGCGGAGGAGGTGGCGGCGGTGGAGGTGGAGGTAACAGTAATGCGCCAAAGATGGGCCAGCAACTGAATCCACAACATTTGCAGCAGCTTCAACAGCTTCAGAAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAAGGCTCTGTTCCTGTCAACAAGAACCAAAACCAGAAAGGAGTCAAGTTTGATGTCCCTGAAGATGATGATGATGATGATTTCAGTGACGAATTCGATGATGAATTTACTGATGATGATGACGACGAGTTTGATGATGAGTTTGACGATCTCCCTCTTCCGTCTAATAAGATGAAGCCCAACATGACGATGATGCCTAATGCTCAACAGATGATGATGAACGCTCAGAAGAATGCCAATCTTGCCGGTGGTCCTGCTAAAAACGGCGGTAAAGGCGCTCCCGCTGCTGGCGGCGGCGGTGCCGGTGGTGGAAAGGGTGCTGGCGGCGGTGCTAAGGGTGGTCCTGGGAATCAAAACCAAGGTGGAGGCAAGAACGGCGGTGGTGGACATCCACAAGATGGTAAAAACGGCGGTGGAGGCGGTGGTCCCAACGCCGGAAAAAAGGGTAACGGCGGAGGTGGGCCCATGGCTGGAGGAGTTTCGGGAGGTTTCCGACCCATGGGAGGTGGAGGACCACAGAATATGAGCATGCCAATGGGTGGTCAAATGGGTATGGGTGGTCCGATGGGGAATATGCCGGCGGTTCAGGGGTTACCAGCGACCGGTCCAGGCGGTGCACCACAGGGTTATTTCCAAGGGGCCGGGATAGATCCTATGCAAATGCAGCAACAGCAACAACAACAGCAATATTTAGCGGCGGTTATGAACCAGCAACGAGCTATGGGGAACGAACGGTTCCAACCAATGATGTACGCAAGGCCACCACCGGCAGTTAACTATATGCCGCCAAACCCGCACCAATATCCGAATCCGCATCCGTATCCGTATCCGTACCCGTATCCATATCCTCCACCTTATGGGAATGATCAATACTCTCATGCCTTTAGCGACGAGAACACATCAAGCTGCGATATTATGTGA

Protein Analysis

473

Amino Acids

49.19

Weight (kDa)

8.12

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 14 - 70 3.5e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 800
AccB7I CCANNNNNTGG 3 cut(s) 899, 1040, 1358
AclWI GGATC 3 cut(s) 19, 161, 1145
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 2 cut(s) 593, 605
AcuI CTGAAG 4 cut(s) 156, 440, 503, 582
AfaI GTAC 2 cut(s) 1253, 1334
AgeI ACCGGT 1 cut(s) 1103
AgsI TTSAA 2 cut(s) 449, 476
AjnI CCWGG 2 cut(s) 844, 1108
AluBI AGCT 7 cut(s) 190, 227, 445, 454, 487, 1220, 1407
AluI AGCT 7 cut(s) 190, 227, 445, 454, 487, 1220, 1407
Alw21I GWGCWC 2 cut(s) 229, 1120
Alw26I GTCTC 1 cut(s) 157
Alw44I GTGCAC 1 cut(s) 1116
AlwI GGATC 3 cut(s) 19, 161, 1145
AlwNI CAGNNNCTG 1 cut(s) 421
AoxI GGCC 6 cut(s) 264, 346, 412, 962, 1140, 1259
ApaI GGGCCC 1 cut(s) 966
ApaLI GTGCAC 1 cut(s) 1116
ApeKI GCWGC 5 cut(s) 439, 442, 785, 1165, 1407
ApoI RAATTY 2 cut(s) 593, 605
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AsiGI ACCGGT 1 cut(s) 1103
AspLEI GCGC 2 cut(s) 403, 779
AsuC2I CCSGG 1 cut(s) 1144
AvaII GGWCC 6 cut(s) 752, 842, 926, 1013, 1061, 1106
BaeGI GKGCMC 2 cut(s) 966, 1120
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 800
BanII GRGCYC 2 cut(s) 229, 966
Bbv12I GWGCWC 2 cut(s) 229, 1120
BbvI GCAGC 5 cut(s) 451, 454, 772, 1177, 1394
BccI CCATC 4 cut(s) 56, 403, 893, 1060
BceAI ACGGC 5 cut(s) 373, 781, 892, 925, 967
BciT130I CCWGG 2 cut(s) 846, 1110
BciVI GTATCC 3 cut(s) 1332, 1338, 1350
BclI TGATCA 1 cut(s) 1366
BcnI CCSGG 1 cut(s) 1144
BcoDI GTCTC 1 cut(s) 157
BfoI RGCGCY 1 cut(s) 780
BfuI GTATCC 3 cut(s) 1332, 1338, 1350
BglII AGATCT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 846, 1110, 1144
Bme18I GGWCC 6 cut(s) 752, 842, 926, 1013, 1061, 1106
BmiI GGNNCC 5 cut(s) 802, 928, 964, 1141, 1238
BmrFI CCNGG 3 cut(s) 846, 1110, 1144
BmsI GCATC 2 cut(s) 684, 1324
BpmI CTGGAG 1 cut(s) 993
Bpu10I CCTNAGC 1 cut(s) 834
BpuMI CCSGG 1 cut(s) 1144
BsaJI CCNNGG 6 cut(s) 295, 845, 859, 966, 999, 1135
BsaWI WCCGGW 1 cut(s) 1103
Bse118I RCCGGY 5 cut(s) 746, 803, 1078, 1103, 1267
BseBI CCWGG 2 cut(s) 846, 1110
BseDI CCNNGG 6 cut(s) 295, 845, 859, 966, 999, 1135
BseGI GGATG 2 cut(s) 889, 1315
BseMII CTCAG 3 cut(s) 144, 509, 740
BseRI GAGGAG 3 cut(s) 378, 483, 990
BseSI GKGCMC 2 cut(s) 966, 1120
BseXI GCAGC 5 cut(s) 451, 454, 772, 1177, 1394
Bsh1285I CGRYCG 1 cut(s) 1104
BshFI GGCC 6 cut(s) 266, 348, 414, 964, 1142, 1261
BshNI GGYRCC 1 cut(s) 800
BshTI ACCGGT 1 cut(s) 1103
BsiEI CGRYCG 1 cut(s) 1104
BsiHKAI GWGCWC 2 cut(s) 229, 1120
BsiSI CCGG 8 cut(s) 306, 747, 804, 936, 1079, 1104, 1143, 1268
BslFI GGGAC 3 cut(s) 241, 542, 912
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 3 cut(s) 241, 542, 912
BsmI GAATGC 2 cut(s) 288, 739
BsnI GGCC 6 cut(s) 266, 348, 414, 964, 1142, 1261
Bsp120I GGGCCC 1 cut(s) 962
Bsp1286I GDGCHC 3 cut(s) 229, 966, 1120
Bsp143I GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
Bsp19I CCATGG 3 cut(s) 295, 966, 999
BspANI GGCC 6 cut(s) 266, 348, 414, 964, 1142, 1261
BspCNI CTCAG 3 cut(s) 143, 508, 739
BspHI TCATGA 1 cut(s) 18
BspLI GGNNCC 5 cut(s) 802, 928, 964, 1141, 1238
BspPI GGATC 3 cut(s) 19, 161, 1145
BspT107I GGYRCC 1 cut(s) 800
BsrFI RCCGGY 5 cut(s) 746, 803, 1078, 1103, 1267
BssAI RCCGGY 5 cut(s) 746, 803, 1078, 1103, 1267
BssECI CCNNGG 6 cut(s) 295, 845, 859, 966, 999, 1135
BssMI GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
BssT1I CCWWGG 5 cut(s) 295, 859, 966, 999, 1135
Bst2UI CCWGG 2 cut(s) 846, 1110
Bst4CI ACNGT 4 cut(s) 59, 151, 395, 1236
Bst6I CTCTTC 2 cut(s) 6, 663
BstC8I GCNNGC 6 cut(s) 192, 416, 790, 823, 1031, 1080
BstDEI CTNAG 4 cut(s) 130, 495, 726, 834
BstDSI CCRYGG 3 cut(s) 295, 966, 999
BstEII GGTNACC 1 cut(s) 1092
BstF5I GGATG 2 cut(s) 889, 1315
BstH2I RGCGCY 1 cut(s) 780
BstHHI GCGC 2 cut(s) 403, 779
BstKTI GATC 6 cut(s) 27, 169, 481, 652, 1153, 1369
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
BstMCI CGRYCG 1 cut(s) 1104
BstNI CCWGG 2 cut(s) 846, 1110
BstNSI RCATGY 2 cut(s) 212, 1033
BstPI GGTNACC 1 cut(s) 1092
BstSCI CCNGG 3 cut(s) 844, 1108, 1142
BstSLI GKGCMC 2 cut(s) 966, 1120
BstV1I GCAGC 5 cut(s) 451, 454, 772, 1177, 1394
BstX2I RGATCY 4 cut(s) 24, 166, 478, 1150
BstYI RGATCY 4 cut(s) 24, 166, 478, 1150
BsuI GTATCC 3 cut(s) 1332, 1338, 1350
BsuRI GGCC 6 cut(s) 266, 348, 414, 964, 1142, 1261
BtgI CCRYGG 3 cut(s) 295, 966, 999
BtsCI GGATG 2 cut(s) 889, 1315
BtsIMutI CAGTG 2 cut(s) 55, 592
Cac8I GCNNGC 6 cut(s) 192, 416, 790, 823, 1031, 1080
CaiI CAGNNNCTG 1 cut(s) 421
CciI TCATGA 1 cut(s) 18
CfoI GCGC 2 cut(s) 403, 779
Cfr10I RCCGGY 5 cut(s) 746, 803, 1078, 1103, 1267
Csp6I GTAC 2 cut(s) 1252, 1333
CspAI ACCGGT 1 cut(s) 1103
CspCI CAANNNNNGTGG 2 cut(s) 417, 452
CviAII CATG 8 cut(s) 19, 209, 296, 685, 967, 1000, 1030, 1379
CviQI GTAC 2 cut(s) 1252, 1333
DdeI CTNAG 4 cut(s) 130, 495, 726, 834
DpnI GATC 6 cut(s) 26, 168, 480, 651, 1152, 1368
DpnII GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 6, 663
EarI CTCTTC 2 cut(s) 6, 663
EciI GGCGGA 3 cut(s) 336, 375, 969
Ecl136II GAGCTC 1 cut(s) 227
Eco130I CCWWGG 5 cut(s) 295, 859, 966, 999, 1135
Eco24I GRGCYC 2 cut(s) 229, 966
Eco47I GGWCC 6 cut(s) 752, 842, 926, 1013, 1061, 1106
Eco53kI GAGCTC 1 cut(s) 227
Eco57I CTGAAG 4 cut(s) 156, 440, 503, 582
Eco91I GGTNACC 1 cut(s) 1092
EcoICRI GAGCTC 1 cut(s) 227
EcoO65I GGTNACC 1 cut(s) 1092
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 2 cut(s) 844, 1108
EcoT14I CCWWGG 5 cut(s) 295, 859, 966, 999, 1135
EcoT38I GRGCYC 2 cut(s) 229, 966
ErhI CCWWGG 5 cut(s) 295, 859, 966, 999, 1135
FaeI CATG 8 cut(s) 22, 212, 299, 688, 970, 1003, 1033, 1382
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 3 cut(s) 241, 542, 912
FatI CATG 8 cut(s) 18, 208, 295, 684, 966, 999, 1029, 1378
FauI CCCGC 2 cut(s) 790, 1302
FbaI TGATCA 1 cut(s) 1366
FokI GGATG 2 cut(s) 876, 1302
FriOI GRGCYC 2 cut(s) 229, 966
GlaI GCGC 2 cut(s) 402, 778
GsuI CTGGAG 1 cut(s) 993
HaeII RGCGCY 1 cut(s) 780
HaeIII GGCC 6 cut(s) 266, 348, 414, 964, 1142, 1261
HapII CCGG 8 cut(s) 306, 747, 804, 936, 1079, 1104, 1143, 1268
HhaI GCGC 2 cut(s) 403, 779
Hin1II CATG 8 cut(s) 22, 212, 299, 688, 970, 1003, 1033, 1382
Hin6I GCGC 2 cut(s) 401, 777
HinP1I GCGC 2 cut(s) 401, 777
HincII GTYRAC 2 cut(s) 520, 1276
HindII GTYRAC 2 cut(s) 520, 1276
HindIII AAGCTT 1 cut(s) 485
HinfI GANTC 5 cut(s) 128, 424, 543, 850, 1309
HpaI GTTAAC 1 cut(s) 1276
HpaII CCGG 8 cut(s) 306, 747, 804, 936, 1079, 1104, 1143, 1268
Hpy166II GTNNAC 6 cut(s) 49, 206, 520, 887, 1118, 1276
Hpy188I TCNGA 7 cut(s) 133, 459, 483, 729, 995, 1065, 1308
Hpy188III TCNNGA 7 cut(s) 19, 28, 82, 115, 184, 476, 984
Hpy8I GTNNAC 6 cut(s) 49, 206, 520, 887, 1118, 1276
Hpy99I CGWCG 2 cut(s) 629, 1394
HpyAV CCTTC 2 cut(s) 98, 180
HpyCH4III ACNGT 4 cut(s) 59, 151, 395, 1236
HpyCH4V TGCA 6 cut(s) 94, 286, 439, 1118, 1159, 1165
HpyF3I CTNAG 4 cut(s) 130, 495, 726, 834
Hsp92II CATG 8 cut(s) 22, 212, 299, 688, 970, 1003, 1033, 1382
HspAI GCGC 2 cut(s) 401, 777
KroI GCCGGC 1 cut(s) 1078
KroNI GCCGGC 1 cut(s) 1080
Ksp22I TGATCA 1 cut(s) 1366
KspAI GTTAAC 1 cut(s) 1276
Kzo9I GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
LmnI GCTCC 4 cut(s) 159, 224, 232, 784
Lsp1109I GCAGC 5 cut(s) 451, 454, 772, 1177, 1394
LweI GCATC 2 cut(s) 684, 1324
MaeIII GTNAC 6 cut(s) 145, 236, 389, 587, 947, 1092
MalI GATC 6 cut(s) 26, 168, 480, 651, 1152, 1368
MboI GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
MboII GAAGA 6 cut(s) 23, 34, 472, 575, 650, 742
MflI RGATCY 4 cut(s) 24, 166, 478, 1150
MhlI GDGCHC 3 cut(s) 229, 966, 1120
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 2 cut(s) 593, 605
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 122, 552
MmeI TCCRAC 2 cut(s) 1018, 1264
Mox20I TGGCCA 1 cut(s) 266
MroNI GCCGGC 1 cut(s) 1078
MscI TGGCCA 1 cut(s) 266
MseI TTAA 4 cut(s) 42, 276, 500, 1275
MslI CAYNNNNRTG 3 cut(s) 60, 689, 1034
Msp20I TGGCCA 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 8 cut(s) 306, 747, 804, 936, 1079, 1104, 1143, 1268
MspR9I CCNGG 3 cut(s) 846, 1110, 1144
Mva1269I GAATGC 2 cut(s) 288, 739
MvaI CCWGG 2 cut(s) 846, 1110
NaeI GCCGGC 1 cut(s) 1080
NciI CCSGG 1 cut(s) 1144
NcoI CCATGG 3 cut(s) 295, 966, 999
NdeII GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
NgoMIV GCCGGC 1 cut(s) 1078
NlaIII CATG 8 cut(s) 22, 212, 299, 688, 970, 1003, 1033, 1382
NlaIV GGNNCC 5 cut(s) 802, 928, 964, 1141, 1238
NmuCI GTSAC 2 cut(s) 145, 587
NspI RCATGY 2 cut(s) 212, 1033
PaeI GCATGC 1 cut(s) 1033
PagI TCATGA 1 cut(s) 18
PctI GAATGC 2 cut(s) 288, 739
PdiI GCCGGC 1 cut(s) 1080
PfeI GAWTC 3 cut(s) 424, 850, 1309
PflMI CCANNNNNTGG 3 cut(s) 899, 1040, 1358
PinAI ACCGGT 1 cut(s) 1103
PleI GAGTC 2 cut(s) 122, 551
PpsI GAGTC 2 cut(s) 122, 551
Psp124BI GAGCTC 1 cut(s) 229
Psp6I CCWGG 2 cut(s) 844, 1108
PspEI GGTNACC 1 cut(s) 1092
PspGI CCWGG 2 cut(s) 844, 1108
PspN4I GGNNCC 5 cut(s) 802, 928, 964, 1141, 1238
PspOMI GGGCCC 1 cut(s) 962
PstNI CAGNNNCTG 1 cut(s) 421
PsuI RGATCY 4 cut(s) 24, 166, 478, 1150
RsaI GTAC 2 cut(s) 1253, 1334
RsaNI GTAC 2 cut(s) 1252, 1333
RseI CAYNNNNRTG 3 cut(s) 60, 689, 1034
SacI GAGCTC 1 cut(s) 229
SaqAI TTAA 4 cut(s) 42, 276, 500, 1275
Sau3AI GATC 6 cut(s) 24, 166, 478, 649, 1150, 1366
SchI GAGTC 2 cut(s) 122, 552
ScrFI CCNGG 3 cut(s) 846, 1110, 1144
SduI GDGCHC 3 cut(s) 229, 966, 1120
SfaNI GCATC 2 cut(s) 684, 1324
SinI GGWCC 6 cut(s) 752, 842, 926, 1013, 1061, 1106
SmiMI CAYNNNNRTG 3 cut(s) 60, 689, 1034
SphI GCATGC 1 cut(s) 1033
Sse9I AATT 2 cut(s) 593, 605
SspI AATATT 1 cut(s) 1190
SstI GAGCTC 1 cut(s) 229
StyD4I CCNGG 3 cut(s) 844, 1108, 1142
StyI CCWWGG 5 cut(s) 295, 859, 966, 999, 1135
TaaI ACNGT 4 cut(s) 59, 151, 395, 1236
TaqI TCGA 2 cut(s) 102, 597
TasI AATT 2 cut(s) 593, 605
TauI GCSGC 6 cut(s) 375, 795, 798, 828, 1199, 1288
TfiI GAWTC 3 cut(s) 424, 850, 1309
Tru1I TTAA 4 cut(s) 42, 276, 500, 1275
Tru9I TTAA 4 cut(s) 42, 276, 500, 1275
TscAI CASTG 2 cut(s) 62, 592
TseFI GTSAC 2 cut(s) 145, 587
TseI GCWGC 5 cut(s) 439, 442, 785, 1165, 1407
Tsp45I GTSAC 2 cut(s) 145, 587
TspDTI ATGAA 7 cut(s) 7, 35, 479, 618, 689, 734, 1220
TspGWI ACGGA 4 cut(s) 651, 1308, 1314, 1320
TspRI CASTG 2 cut(s) 62, 592
Van91I CCANNNNNTGG 3 cut(s) 899, 1040, 1358
VneI GTGCAC 1 cut(s) 1116
VpaK11BI GGWCC 6 cut(s) 752, 842, 926, 1013, 1061, 1106
XapI RAATTY 2 cut(s) 593, 605
XceI RCATGY 2 cut(s) 212, 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.