RchiOBHm_Chr4g0418311

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
43727094 .. 43730159
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38830

Sequence Viewer

Length: 1626 bp
ATGAGTAAAGAAGAGTTCTTGAAGATCCAGAAATGTTCTCTCAAAGTTAACATTCACTGTGATGGATGCAAGCACAAGGTGAAGAAAATCTTGCAGAAAATTGATGGGGTTTGTACAACCGACATAGATTCCGAGCAGGGGAAGGTGATCGTTTCCGGCAATGTTGACCCCTCCGTTCTGATCAAGAAGCTCGCGAAATCAGGGAAACGTGCAGAGCTCTGGGGCGCTCCGAAGGCCAACAACAACAGTCAGAACCAGAACAACATGGCCAATCAGAAGAACATGCAACTTGACAATGGCAAAGGGAATAACAAAGGCCAGAACAACCAGAAAGGCGGCGGCGGAGGCGGAGGAGGAGGAGGAGGAGGCAACAACAATCAGCCCAAGGGTGGAGGACAACAAGGCCCAAACCCTCAGCAACAGCAACAAATGCAACAGCAAATGCAGCAGCAACTCCTGCAGCTGCAGCAGCTTCAGCAAATGAAGGGGTTGCAAGATCTGAAGCTGCCCCAATTGAAAGGGATGCAAATGGCTCCTGGTTTCAAAGGCCCGAACCCACCTAGCCAGAACCAGAAGGCTGTCAAATTCGCGGACATGGACGAAGATGACATGACTGATGATGAGTATGATGATCTTGATGATGACGAAGATTATGACGAGGAGGATTTTGATGACGAGCTGGATGATCCTCGCCTGGTTCTGAATAAGATGAAGCCGGCGGCAATGGGTGGTGGTGGTGGTCAGGGGCTGCCTCCTATGATGATGAATGGAATGAACCACCAACAGATGATGAATGTTCAGAAGGCTGGTGGTGGACAACAGAATGGTGGCGGCGGCGGCGGTGGTGGTAATGGTGGAAAGAAAGGTGGTGGCGGCGGTGGAGGAGGGGGTGCGCCGTCTCAGGGGAATATGGGTGGTGGCGGTGGAAAGAAAGGCGGTGGCGGTGGTGGAGATCATGGTCAAAATCAAGCTGGGGGTGGCGGCAAAAATGGAGGCAAGAACAGTGGTGGGTTTCCCCCAAATGGTGGTGGTGGGGCACAGAACAAGAATGGTAACGGAGGCCAAGGTGGTGGTGCTAATGGCAATGGAGCTAAAAAGGGGGGTGGTGGTGGTGGAATGAGTGAGGCTCAACTCCATGCTATGATGAGCCACCAGAACATGGGTGGGAGACCTCAAGGCATGCCTGGAGGTAATGTGGGGCAGCAGATGCCTGGGATGAGCCAGATGAACATGGCAATGGGTCCAATGGGTCCAATGGGTCCAATGGGTCCAATGGGAAGCATGCCAATGGGTCAGATGGGCCAAATGCCGGCCGTTCAAGGTCTACCGGCTGCCGCCATGAGTGGCGGCGGCGGCGGCGGCCCCGGTGGCTACTTCCAAGGAGCTGGGCCTGAGGCCATGCCTGGTAACCCATACCAGAACCCACAGTTAATGGCTGCAATGATGAACCAGCAGAGAGCTATGGGCGGCGGGGACAGGTCGTTCCAGCCTATGATGTATAATAGGATTCCTCCATCGACCAACTACATGCCGCCCCAGCATTACCCATACCCTCCTCCAGCTGGTGGTGACCCCTACACCCATTTCTTCAGTGATGAGAACACTTCAAGCTGCAATGTGATGTGA

Protein Analysis

541

Amino Acids

55.24

Weight (kDa)

8.1

Isoelectric Point (pI)

55.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 15 - 69 2.5e-12 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 1025, 1159, 1565
AccI GTMKAC 1 cut(s) 1324
AccII CGCG 2 cut(s) 194, 590
AclWI GGATC 2 cut(s) 19, 680
AcoI YGGCCR 2 cut(s) 267, 1311
AcsI RAATTY 1 cut(s) 584
AcuI CTGAAG 3 cut(s) 458, 521, 1573
AdeI CACNNNGTG 1 cut(s) 79
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 9 cut(s) 138, 389, 902, 1022, 1025, 1159, 1309, 1562, 1565
AgsI TTSAA 5 cut(s) 22, 517, 544, 1319, 1608
AjnI CCWGG 5 cut(s) 535, 693, 1183, 1210, 1402
AloI GAACNNNNNNTCC 2 cut(s) 1466, 1498
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 903, 1162
AlwI GGATC 2 cut(s) 19, 680
AlwNI CAGNNNCTG 1 cut(s) 748
ApoI RAATTY 1 cut(s) 584
AspLEI GCGC 2 cut(s) 227, 895
AspS9I GGNCC 9 cut(s) 404, 548, 1241, 1250, 1259, 1268, 1300, 1361, 1388
AsuC2I CCSGG 1 cut(s) 1365
AsuHPI GGTGA 3 cut(s) 91, 157, 1580
AvaII GGWCC 4 cut(s) 1241, 1250, 1259, 1268
AxyI CCTNAGG 1 cut(s) 1392
BaeGI GKGCMC 1 cut(s) 1039
BalI TGGCCA 1 cut(s) 269
BanII GRGCYC 1 cut(s) 219
Bbv12I GWGCWC 1 cut(s) 219
BbvCI CCTCAGC 1 cut(s) 414
BccI CCATC 4 cut(s) 56, 98, 1291, 1522
BceAI ACGGC 2 cut(s) 880, 1298
BciT130I CCWGG 5 cut(s) 537, 695, 1185, 1212, 1404
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 1365
BcoDI GTCTC 2 cut(s) 903, 1162
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 458, 464
BfoI RGCGCY 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 1368
BglII AGATCT 1 cut(s) 496
Bme1390I CCNGG 6 cut(s) 537, 695, 1185, 1212, 1365, 1404
Bme18I GGWCC 4 cut(s) 1241, 1250, 1259, 1268
BmgT120I GGNCC 9 cut(s) 404, 548, 1241, 1250, 1259, 1268, 1300, 1361, 1388
BmiI GGNNCC 6 cut(s) 534, 1242, 1251, 1260, 1269, 1363
BmrFI CCNGG 6 cut(s) 537, 695, 1185, 1212, 1365, 1404
BmsI GCATC 3 cut(s) 56, 513, 1197
BplI GAGNNNNNCTC 2 cut(s) 1111, 1143
BpmI CTGGAG 2 cut(s) 1206, 1542
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 1158
BpuMI CCSGG 1 cut(s) 1365
BsaI GGTCTC 1 cut(s) 1162
BsaJI CCNNGG 5 cut(s) 384, 1063, 1211, 1363, 1378
BsaXI ACNNNNNCTCC 2 cut(s) 1179, 1209
Bsc4I CCNNNNNNNGG 9 cut(s) 138, 389, 902, 1022, 1025, 1159, 1309, 1562, 1565
Bse118I RCCGGY 3 cut(s) 715, 1309, 1327
Bse21I CCTNAGG 1 cut(s) 1392
Bse3DI GCAATG 6 cut(s) 166, 729, 1090, 1242, 1446, 1621
BseBI CCWGG 5 cut(s) 537, 695, 1185, 1212, 1404
BseDI CCNNGG 5 cut(s) 384, 1063, 1211, 1363, 1378
BseGI GGATG 4 cut(s) 71, 528, 688, 1221
BseLI CCNNNNNNNGG 9 cut(s) 138, 389, 902, 1022, 1025, 1159, 1309, 1562, 1565
BseMI GCAATG 6 cut(s) 166, 729, 1090, 1242, 1446, 1621
BseMII CTCAG 3 cut(s) 428, 914, 1383
BseRI GAGGAG 8 cut(s) 366, 369, 372, 375, 378, 674, 897, 1545
BseSI GKGCMC 1 cut(s) 1039
BseX3I CGGCCG 1 cut(s) 1311
BseYI CCCAGC 3 cut(s) 971, 1385, 1536
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 2 cut(s) 194, 590
Bsh1285I CGRYCG 1 cut(s) 1314
BsiEI CGRYCG 1 cut(s) 1314
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 5 cut(s) 156, 716, 1310, 1328, 1365
BslFI GGGAC 1 cut(s) 1487
BslI CCNNNNNNNGG 9 cut(s) 138, 389, 902, 1022, 1025, 1159, 1309, 1562, 1565
BsmAI GTCTC 2 cut(s) 903, 1162
BsmBI CGTCTC 1 cut(s) 903
BsmFI GGGAC 1 cut(s) 1487
Bso31I GGTCTC 1 cut(s) 1162
Bsp1286I GDGCHC 2 cut(s) 219, 1039
Bsp1407I TGTACA 1 cut(s) 113
Bsp143I GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
Bsp68I TCGCGA 1 cut(s) 194
BspCNI CTCAG 3 cut(s) 427, 913, 1384
BspFNI CGCG 2 cut(s) 194, 590
BspLI GGNNCC 6 cut(s) 534, 1242, 1251, 1260, 1269, 1363
BspMAI CTGCAG 2 cut(s) 462, 468
BspPI GGATC 2 cut(s) 19, 680
BspTNI GGTCTC 1 cut(s) 1162
BsrDI GCAATG 6 cut(s) 166, 729, 1090, 1242, 1446, 1621
BsrFI RCCGGY 3 cut(s) 715, 1309, 1327
BsrGI TGTACA 1 cut(s) 113
BssAI RCCGGY 3 cut(s) 715, 1309, 1327
BssECI CCNNGG 5 cut(s) 384, 1063, 1211, 1363, 1378
BssMI GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
BssT1I CCWWGG 3 cut(s) 384, 1063, 1378
Bst2UI CCWGG 5 cut(s) 537, 695, 1185, 1212, 1404
Bst4CI ACNGT 4 cut(s) 59, 248, 1004, 1428
Bst6I CTCTTC 1 cut(s) 6
BstAPI GCANNNNNTGC 3 cut(s) 430, 457, 1207
BstAUI TGTACA 1 cut(s) 113
BstC8I GCNNGC 6 cut(s) 71, 192, 717, 1181, 1283, 1311
BstDEI CTNAG 3 cut(s) 414, 900, 1392
BstEII GGTNACC 2 cut(s) 1406, 1568
BstF5I GGATG 4 cut(s) 71, 528, 688, 1221
BstFNI CGCG 2 cut(s) 194, 590
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 2 cut(s) 227, 895
BstKTI GATC 7 cut(s) 27, 150, 183, 499, 634, 688, 955
BstMAI GTCTC 2 cut(s) 903, 1162
BstMBI GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
BstMCI CGRYCG 1 cut(s) 1314
BstNI CCWGG 5 cut(s) 537, 695, 1185, 1212, 1404
BstNSI RCATGY 4 cut(s) 286, 1183, 1285, 1531
BstPI GGTNACC 2 cut(s) 1406, 1568
BstSCI CCNGG 6 cut(s) 535, 693, 1183, 1210, 1363, 1402
BstSFI CTRYAG 2 cut(s) 458, 464
BstSLI GKGCMC 1 cut(s) 1039
BstUI CGCG 2 cut(s) 194, 590
BstX2I RGATCY 2 cut(s) 24, 496
BstXI CCANNNNNNTGG 2 cut(s) 1070, 1385
BstYI RGATCY 2 cut(s) 24, 496
BstZI CGGCCG 1 cut(s) 1311
Bsu36I CCTNAGG 1 cut(s) 1392
BtsCI GGATG 4 cut(s) 71, 528, 688, 1221
BtsIMutI CAGTG 3 cut(s) 55, 1009, 1597
BtuMI TCGCGA 1 cut(s) 194
Cac8I GCNNGC 6 cut(s) 71, 192, 717, 1181, 1283, 1311
CaiI CAGNNNCTG 1 cut(s) 748
CfoI GCGC 2 cut(s) 227, 895
Cfr10I RCCGGY 3 cut(s) 715, 1309, 1327
Cfr13I GGNCC 9 cut(s) 404, 548, 1241, 1250, 1259, 1268, 1300, 1361, 1388
Csp6I GTAC 1 cut(s) 114
CspCI CAANNNNNGTGG 2 cut(s) 985, 1020
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 3 cut(s) 414, 900, 1392
DpnI GATC 7 cut(s) 26, 149, 182, 498, 633, 687, 954
DpnII GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
DraIII CACNNNGTG 1 cut(s) 79
EaeI YGGCCR 2 cut(s) 267, 1311
EagI CGGCCG 1 cut(s) 1311
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 2 cut(s) 357, 363
Ecl136II GAGCTC 1 cut(s) 217
EclXI CGGCCG 1 cut(s) 1311
Eco130I CCWWGG 3 cut(s) 384, 1063, 1378
Eco24I GRGCYC 1 cut(s) 219
Eco31I GGTCTC 1 cut(s) 1162
Eco47I GGWCC 4 cut(s) 1241, 1250, 1259, 1268
Eco52I CGGCCG 1 cut(s) 1311
Eco53kI GAGCTC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 458, 521, 1573
Eco81I CCTNAGG 1 cut(s) 1392
Eco91I GGTNACC 2 cut(s) 1406, 1568
EcoICRI GAGCTC 1 cut(s) 217
EcoO65I GGTNACC 2 cut(s) 1406, 1568
EcoRII CCWGG 5 cut(s) 535, 693, 1183, 1210, 1402
EcoT14I CCWWGG 3 cut(s) 384, 1063, 1378
EcoT38I GRGCYC 1 cut(s) 219
ErhI CCWWGG 3 cut(s) 384, 1063, 1378
Esp3I CGTCTC 1 cut(s) 903
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 1487
FauI CCCGC 1 cut(s) 1463
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 1 cut(s) 1324
FokI GGATG 4 cut(s) 78, 535, 695, 1228
FriOI GRGCYC 1 cut(s) 219
FspBI CTAG 1 cut(s) 561
GlaI GCGC 2 cut(s) 226, 894
GsaI CCCAGC 3 cut(s) 975, 1389, 1540
GsuI CTGGAG 2 cut(s) 1206, 1542
HaeII RGCGCY 1 cut(s) 228
HapII CCGG 5 cut(s) 156, 716, 1310, 1328, 1365
HhaI GCGC 2 cut(s) 227, 895
Hin6I GCGC 2 cut(s) 225, 893
HinP1I GCGC 2 cut(s) 225, 893
HincII GTYRAC 2 cut(s) 49, 166
HindII GTYRAC 2 cut(s) 49, 166
HinfI GANTC 2 cut(s) 128, 1507
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 5 cut(s) 156, 716, 1310, 1328, 1365
HphI GGTGA 3 cut(s) 91, 157, 1580
Hpy166II GTNNAC 4 cut(s) 49, 166, 815, 1325
Hpy188I TCNGA 9 cut(s) 133, 180, 231, 252, 276, 501, 702, 801, 1296
Hpy188III TCNNGA 5 cut(s) 19, 28, 184, 193, 635
Hpy8I GTNNAC 4 cut(s) 49, 166, 815, 1325
HpyAV CCTTC 5 cut(s) 136, 226, 478, 568, 796
HpyCH4III ACNGT 4 cut(s) 59, 248, 1004, 1428
HpyCH4IV ACGT 1 cut(s) 208
HpyF3I CTNAG 3 cut(s) 414, 900, 1392
HpySE526I ACGT 1 cut(s) 208
HspAI GCGC 2 cut(s) 225, 893
KroI GCCGGC 2 cut(s) 715, 1309
KroNI GCCGGC 2 cut(s) 717, 1311
Ksp22I TGATCA 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
LmnI GCTCC 4 cut(s) 232, 538, 1088, 1382
LweI GCATC 3 cut(s) 56, 513, 1197
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 3 cut(s) 1052, 1406, 1568
MalI GATC 7 cut(s) 26, 149, 182, 498, 633, 687, 954
MboI GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
MboII GAAGA 7 cut(s) 23, 34, 94, 289, 614, 659, 1579
MfeI CAATTG 1 cut(s) 512
MflI RGATCY 2 cut(s) 24, 496
MhlI GDGCHC 2 cut(s) 219, 1039
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 3 cut(s) 99, 512, 584
MluNI TGGCCA 1 cut(s) 269
Mox20I TGGCCA 1 cut(s) 269
MroNI GCCGGC 2 cut(s) 715, 1309
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 48, 1430
MslI CAYNNNNRTG 3 cut(s) 60, 1235, 1286
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 463, 1562
MspI CCGG 5 cut(s) 156, 716, 1310, 1328, 1365
MspR9I CCNGG 6 cut(s) 537, 695, 1185, 1212, 1365, 1404
MunI CAATTG 1 cut(s) 512
MvaI CCWGG 5 cut(s) 537, 695, 1185, 1212, 1404
MvnI CGCG 2 cut(s) 194, 590
NaeI GCCGGC 2 cut(s) 717, 1311
NciI CCSGG 1 cut(s) 1365
NdeII GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
NgoMIV GCCGGC 2 cut(s) 715, 1309
NlaIV GGNNCC 6 cut(s) 534, 1242, 1251, 1260, 1269, 1363
NmuCI GTSAC 1 cut(s) 1568
NruI TCGCGA 1 cut(s) 194
NspI RCATGY 4 cut(s) 286, 1183, 1285, 1531
PaeI GCATGC 2 cut(s) 1183, 1285
PdiI GCCGGC 2 cut(s) 717, 1311
PfeI GAWTC 2 cut(s) 128, 1507
PflMI CCANNNNNTGG 3 cut(s) 1025, 1159, 1565
Psp124BI GAGCTC 1 cut(s) 219
Psp6I CCWGG 5 cut(s) 535, 693, 1183, 1210, 1402
PspEI GGTNACC 2 cut(s) 1406, 1568
PspFI CCCAGC 3 cut(s) 971, 1385, 1536
PspGI CCWGG 5 cut(s) 535, 693, 1183, 1210, 1402
PspN4I GGNNCC 6 cut(s) 534, 1242, 1251, 1260, 1269, 1363
PspPI GGNCC 9 cut(s) 404, 548, 1241, 1250, 1259, 1268, 1300, 1361, 1388
PstI CTGCAG 2 cut(s) 462, 468
PstNI CAGNNNCTG 1 cut(s) 748
PsuI RGATCY 2 cut(s) 24, 496
PvuII CAGCTG 2 cut(s) 463, 1562
RruI TCGCGA 1 cut(s) 194
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 3 cut(s) 60, 1235, 1286
SacI GAGCTC 1 cut(s) 219
SaqAI TTAA 2 cut(s) 48, 1430
Sau3AI GATC 7 cut(s) 24, 147, 180, 496, 631, 685, 952
Sau96I GGNCC 9 cut(s) 404, 548, 1241, 1250, 1259, 1268, 1300, 1361, 1388
ScrFI CCNGG 6 cut(s) 537, 695, 1185, 1212, 1365, 1404
SduI GDGCHC 2 cut(s) 219, 1039
SfaNI GCATC 3 cut(s) 56, 513, 1197
SfcI CTRYAG 2 cut(s) 458, 464
SinI GGWCC 4 cut(s) 1241, 1250, 1259, 1268
SmiMI CAYNNNNRTG 3 cut(s) 60, 1235, 1286
SmlI CTYRAG 1 cut(s) 1173
SmoI CTYRAG 1 cut(s) 1173
SphI GCATGC 2 cut(s) 1183, 1285
Sse9I AATT 3 cut(s) 99, 512, 584
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 219
StyD4I CCNGG 6 cut(s) 535, 693, 1183, 1210, 1363, 1402
StyI CCWWGG 3 cut(s) 384, 1063, 1378
TaaI ACNGT 4 cut(s) 59, 248, 1004, 1428
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 1517
TasI AATT 3 cut(s) 99, 512, 584
TatI WGTACW 1 cut(s) 113
TfiI GAWTC 2 cut(s) 128, 1507
Tru1I TTAA 2 cut(s) 48, 1430
Tru9I TTAA 2 cut(s) 48, 1430
TscAI CASTG 3 cut(s) 62, 1009, 1597
TseFI GTSAC 1 cut(s) 1568
Tsp45I GTSAC 1 cut(s) 1568
TspDTI ATGAA 7 cut(s) 497, 725, 779, 788, 806, 1241, 1460
TspGWI ACGGA 2 cut(s) 163, 1071
TspRI CASTG 3 cut(s) 62, 1009, 1597
Van91I CCANNNNNTGG 3 cut(s) 1025, 1159, 1565
VpaK11BI GGWCC 4 cut(s) 1241, 1250, 1259, 1268
XapI RAATTY 1 cut(s) 584
XceI RCATGY 4 cut(s) 286, 1183, 1285, 1531
XcmI CCANNNNNNNNNTGG 1 cut(s) 1160
XmiI GTMKAC 1 cut(s) 1324
XspI CTAG 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.