Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000153.1

Orthogroup ID

OG0007097

Physical Location & Seq

Genomic Coordinates Reverse (-)

14958 .. 17702

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000153.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atgagtaaagaagagttcatgaagatccagaaatgtactctcaaagttaacattcactgtgatggatgcaagcacaaggtgaagaaaatcttgcagagaattgaaggggtttgtacaaccgacatagattccgagcaggggaaggtgatcgtttccggcaatgttgacccctccgtcctgatcaagaagctcgcgaaatcagggaaactagccatgagtaaagaagagttcatgaagatccagaaatgtactctcaaagttaacattcactgtgatggatgcaagcacaaggtgaagaaaatcttgcagagaattgaaggggtttgtacaaccgacatagattccgagcaggggaaggtgatcgtttccggcaatgttgacccctccgttctgatcaagaagctcgcgaaatcagggaaacgtgcggagctctggggcgctccgaaggccaacaacaacaatcagaaccagaacaacatggccaatcagaagaacatgcaacttgacaatggcaaaggtgggaataacaaaggccaaaacaaccagaagggcggtggcggtggcggagccggagccggaggaggaggaggaggaggcaacaacaatcagcctaagggtggaggacaacaaggcccaaaccctcagcaacagcaacaaatgcaacagcaaatgcagcagcaactcctgcagcttcagcagcttcagcaaatgaaggggttgcaagatctgaagctgccccaattgaaagcgatgcaaatgcctcctgctttcaaagggccgaacccacctagccagaaccagaaggctgtcaaattcgcggacatggacgatgatgacatgactgatgaggagtatgatgatcttgatgatgacgaagattatgacgacgaggattttgatgacgagctggatgatcctcgcctggctcttaagatgaagccggcgacaatgggtggtggtggtggtcaggggctgcctcctatgatgatgaatggaatgaaccagccacagatgatgatgaatgttcagaaggctggtggtggacaaccgaatggtggcggcggcggtggtggtaatggtggaaagaaaggtggtggtggtggcggcggaggagggggtgcgccgtctcaggggaatatgggcggtccggagccggaggaggaggaggcaacaacaatcagcctaagggtggaggacaacaaggcccaaaccctcagcaacagcaacaaatgcaacagcaaatgcagcagcaactcctgcagctgcagcagcttcagcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0030312 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

427

Amino Acids

45.21

Weight (kDa)

7.87

Isoelectric Point (pI)

56.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06130 AT3G06130 AT5G19090 AT5G19090 AT5G19090 AT5G19090 AT5G19090
fragaria_vesca	FvH4_4g14520 FvH4_4g14520 FvH4_4g14520
malus_domestica	MD16G1184300.v1.1
prunus_persica	Prupe.1G151700_v2.0.a1 Prupe.1G151700_v2.0.a1
pyrus_communis	pycom13g15870
rosa_chinensis	RchiOBHm_Chr4g0418311
rosa_laevigata	RLG00000007878
rosa_multiflora	Rmu_ssc0000153.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361490
rosa_rugosa	Rorug04G0152000 Rorug04G0152100
rosa_samantha	Rh4AG213500 Rh4BG216800 Rh4CG225200 Rh4DG212100
rosa_wichuraiana	Rw4G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AccII	CGCG	3 cut(s)	194, 407, 818
AccIII	TCCGGA	1 cut(s)	1147
AclWI	GGATC	3 cut(s)	19, 232, 908
AcoI	YGGCCR	1 cut(s)	480
AcsI	RAATTY	1 cut(s)	812
AcuI	CTGAAG	4 cut(s)	677, 686, 749, 1258
AdeI	CACNNNGTG	2 cut(s)	79, 292
AfaI	GTAC	4 cut(s)	37, 115, 250, 328
AfiI	CCNNNNNNNGG	6 cut(s)	138, 351, 617, 1055, 1130, 1189
AflII	CTTAAG	1 cut(s)	929
AgsI	TTSAA	4 cut(s)	104, 317, 745, 772
AjnI	CCWGG	1 cut(s)	921
AluBI	AGCT	9 cut(s)	190, 403, 430, 691, 700, 733, 907, 1263, 1272
AluI	AGCT	9 cut(s)	190, 403, 430, 691, 700, 733, 907, 1263, 1272
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	1131
AlwI	GGATC	3 cut(s)	19, 232, 908
AlwNI	CAGNNNCTG	1 cut(s)	973
Aor13HI	TCCGGA	1 cut(s)	1147
AoxI	GGCC	6 cut(s)	447, 480, 532, 631, 776, 1203
ApoI	RAATTY	1 cut(s)	812
ArsI	GACNNNNNNTTYG	2 cut(s)	878, 910
AspLEI	GCGC	2 cut(s)	440, 1123
AspS9I	GGNCC	4 cut(s)	632, 776, 1145, 1204
AsuHPI	GGTGA	4 cut(s)	91, 157, 304, 370
AvaII	GGWCC	1 cut(s)	1145
AxyI	CCTNAGG	2 cut(s)	612, 1184
BalI	TGGCCA	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	432
BbvCI	CCTCAGC	2 cut(s)	642, 1214
BccI	CCATC	2 cut(s)	56, 269
BceAI	ACGGC	1 cut(s)	1108
BcgI	CGANNNNNNTGC	2 cut(s)	739, 773
BciT130I	CCWGG	1 cut(s)	923
BclI	TGATCA	2 cut(s)	180, 393
BcoDI	GTCTC	1 cut(s)	1131
BfaI	CTAG	2 cut(s)	209, 789
BfmI	CTRYAG	3 cut(s)	686, 1258, 1264
BfoI	RGCGCY	1 cut(s)	441
BfrI	CTTAAG	1 cut(s)	929
BglII	AGATCT	1 cut(s)	724
Bme1390I	CCNGG	1 cut(s)	923
Bme18I	GGWCC	1 cut(s)	1145
BmgT120I	GGNCC	4 cut(s)	632, 776, 1145, 1204
BmiI	GGNNCC	3 cut(s)	568, 574, 1152
BmrFI	CCNGG	1 cut(s)	923
BmsI	GCATC	3 cut(s)	56, 269, 741
Bpu10I	CCTNAGC	2 cut(s)	642, 1214
BsaWI	WCCGGW	1 cut(s)	1147
Bsc4I	CCNNNNNNNGG	6 cut(s)	138, 351, 617, 1055, 1130, 1189
Bse118I	RCCGGY	1 cut(s)	940
Bse21I	CCTNAGG	2 cut(s)	612, 1184
Bse3DI	GCAATG	2 cut(s)	166, 379
BseAI	TCCGGA	1 cut(s)	1147
BseBI	CCWGG	1 cut(s)	923
BseGI	GGATG	3 cut(s)	71, 284, 916
BseLI	CCNNNNNNNGG	6 cut(s)	138, 351, 617, 1055, 1130, 1189
BseMI	GCAATG	2 cut(s)	166, 379
BseMII	CTCAG	3 cut(s)	656, 1142, 1228
Bsh1236I	CGCG	3 cut(s)	194, 407, 818
BshFI	GGCC	6 cut(s)	449, 482, 534, 633, 778, 1205
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	7 cut(s)	156, 369, 570, 576, 941, 1148, 1154
BslI	CCNNNNNNNGG	6 cut(s)	138, 351, 617, 1055, 1130, 1189
BsmAI	GTCTC	1 cut(s)	1131
BsmBI	CGTCTC	1 cut(s)	1131
BsnI	GGCC	6 cut(s)	449, 482, 534, 633, 778, 1205
Bsp1286I	GDGCHC	1 cut(s)	432
Bsp13I	TCCGGA	1 cut(s)	1147
Bsp1407I	TGTACA	2 cut(s)	113, 326
Bsp143I	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
Bsp68I	TCGCGA	2 cut(s)	194, 407
BspANI	GGCC	6 cut(s)	449, 482, 534, 633, 778, 1205
BspCNI	CTCAG	3 cut(s)	655, 1141, 1227
BspEI	TCCGGA	1 cut(s)	1147
BspFNI	CGCG	3 cut(s)	194, 407, 818
BspHI	TCATGA	2 cut(s)	18, 231
BspLI	GGNNCC	3 cut(s)	568, 574, 1152
BspMAI	CTGCAG	3 cut(s)	690, 1262, 1268
BspPI	GGATC	3 cut(s)	19, 232, 908
BspTI	CTTAAG	1 cut(s)	929
BsrDI	GCAATG	2 cut(s)	166, 379
BsrFI	RCCGGY	1 cut(s)	940
BsrGI	TGTACA	2 cut(s)	113, 326
BssAI	RCCGGY	1 cut(s)	940
BssMI	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
Bst2UI	CCWGG	1 cut(s)	923
Bst4CI	ACNGT	2 cut(s)	59, 272
Bst6I	CTCTTC	2 cut(s)	6, 219
BstAFI	CTTAAG	1 cut(s)	929
BstAPI	GCANNNNNTGC	4 cut(s)	658, 685, 1230, 1257
BstAUI	TGTACA	2 cut(s)	113, 326
BstC8I	GCNNGC	5 cut(s)	71, 192, 284, 405, 942
BstDEI	CTNAG	5 cut(s)	612, 642, 1128, 1184, 1214
BstF5I	GGATG	3 cut(s)	71, 284, 916
BstFNI	CGCG	3 cut(s)	194, 407, 818
BstH2I	RGCGCY	1 cut(s)	441
BstHHI	GCGC	2 cut(s)	440, 1123
BstKTI	GATC	9 cut(s)	27, 150, 183, 240, 363, 396, 727, 862, 916
BstMAI	GTCTC	1 cut(s)	1131
BstMBI	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
BstNI	CCWGG	1 cut(s)	923
BstNSI	RCATGY	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	921
BstSFI	CTRYAG	3 cut(s)	686, 1258, 1264
BstUI	CGCG	3 cut(s)	194, 407, 818
BstX2I	RGATCY	3 cut(s)	24, 237, 724
BstYI	RGATCY	3 cut(s)	24, 237, 724
Bsu36I	CCTNAGG	2 cut(s)	612, 1184
BsuRI	GGCC	6 cut(s)	449, 482, 534, 633, 778, 1205
BtgZI	GCGATG	1 cut(s)	764
BtsCI	GGATG	3 cut(s)	71, 284, 916
BtsIMutI	CAGTG	2 cut(s)	55, 268
BtuMI	TCGCGA	2 cut(s)	194, 407
Cac8I	GCNNGC	5 cut(s)	71, 192, 284, 405, 942
CaiI	CAGNNNCTG	1 cut(s)	973
CciI	TCATGA	2 cut(s)	18, 231
CfoI	GCGC	2 cut(s)	440, 1123
Cfr10I	RCCGGY	1 cut(s)	940
Cfr13I	GGNCC	4 cut(s)	632, 776, 1145, 1204
CpoI	CGGWCCG	1 cut(s)	1145
Csp6I	GTAC	4 cut(s)	36, 114, 249, 327
CspI	CGGWCCG	1 cut(s)	1145
CviAII	CATG	7 cut(s)	19, 214, 232, 478, 496, 823, 838
CviQI	GTAC	4 cut(s)	36, 114, 249, 327
DdeI	CTNAG	5 cut(s)	612, 642, 1128, 1184, 1214
DpnI	GATC	9 cut(s)	26, 149, 182, 239, 362, 395, 726, 861, 915
DpnII	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
DraIII	CACNNNGTG	2 cut(s)	79, 292
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EaeI	YGGCCR	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	6, 219
EarI	CTCTTC	2 cut(s)	6, 219
EciI	GGCGGA	2 cut(s)	579, 1122
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	1145
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	4 cut(s)	677, 686, 749, 1258
Eco81I	CCTNAGG	2 cut(s)	612, 1184
EcoICRI	GAGCTC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	432
Esp3I	CGTCTC	1 cut(s)	1131
FaeI	CATG	7 cut(s)	22, 217, 235, 481, 499, 826, 841
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 287, 319
FatI	CATG	7 cut(s)	18, 213, 231, 477, 495, 822, 837
FbaI	TGATCA	2 cut(s)	180, 393
FokI	GGATG	3 cut(s)	78, 291, 923
FriOI	GRGCYC	1 cut(s)	432
FspBI	CTAG	2 cut(s)	209, 789
GlaI	GCGC	2 cut(s)	439, 1122
HaeII	RGCGCY	1 cut(s)	441
HaeIII	GGCC	6 cut(s)	449, 482, 534, 633, 778, 1205
HapII	CCGG	7 cut(s)	156, 369, 570, 576, 941, 1148, 1154
HhaI	GCGC	2 cut(s)	440, 1123
Hin1II	CATG	7 cut(s)	22, 217, 235, 481, 499, 826, 841
Hin6I	GCGC	2 cut(s)	438, 1121
HinP1I	GCGC	2 cut(s)	438, 1121
HincII	GTYRAC	4 cut(s)	49, 166, 262, 379
HindII	GTYRAC	4 cut(s)	49, 166, 262, 379
HinfI	GANTC	2 cut(s)	128, 341
HpaI	GTTAAC	2 cut(s)	49, 262
HpaII	CCGG	7 cut(s)	156, 369, 570, 576, 941, 1148, 1154
HphI	GGTGA	4 cut(s)	91, 157, 304, 370
Hpy166II	GTNNAC	5 cut(s)	49, 166, 262, 379, 1043
Hpy188I	TCNGA	8 cut(s)	133, 346, 393, 444, 465, 489, 729, 1029
Hpy8I	GTNNAC	5 cut(s)	49, 166, 262, 379, 1043
Hpy99I	CGWCG	1 cut(s)	890
HpyAV	CCTTC	9 cut(s)	98, 136, 311, 349, 439, 541, 706, 796, 1024
HpyCH4III	ACNGT	2 cut(s)	59, 272
HpyCH4IV	ACGT	1 cut(s)	421
HpyF3I	CTNAG	5 cut(s)	612, 642, 1128, 1184, 1214
HpySE526I	ACGT	1 cut(s)	421
Hsp92II	CATG	7 cut(s)	22, 217, 235, 481, 499, 826, 841
HspAI	GCGC	2 cut(s)	438, 1121
Kpn2I	TCCGGA	1 cut(s)	1147
KroI	GCCGGC	1 cut(s)	940
KroNI	GCCGGC	1 cut(s)	942
Ksp22I	TGATCA	2 cut(s)	180, 393
KspAI	GTTAAC	2 cut(s)	49, 262
Kzo9I	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
LmnI	GCTCC	5 cut(s)	427, 445, 566, 572, 1150
LweI	GCATC	3 cut(s)	56, 269, 741
MaeI	CTAG	2 cut(s)	209, 789
MaeII	ACGT	1 cut(s)	421
MalI	GATC	9 cut(s)	26, 149, 182, 239, 362, 395, 726, 861, 915
MboI	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
MboII	GAAGA	8 cut(s)	23, 34, 94, 236, 247, 307, 502, 887
MfeI	CAATTG	1 cut(s)	740
MflI	RGATCY	3 cut(s)	24, 237, 724
MhlI	GDGCHC	1 cut(s)	432
MlsI	TGGCCA	1 cut(s)	482
MluCI	AATT	4 cut(s)	99, 312, 740, 812
MluNI	TGGCCA	1 cut(s)	482
Mox20I	TGGCCA	1 cut(s)	482
MroI	TCCGGA	1 cut(s)	1147
MroNI	GCCGGC	1 cut(s)	940
MscI	TGGCCA	1 cut(s)	482
MseI	TTAA	3 cut(s)	48, 261, 930
MslI	CAYNNNNRTG	2 cut(s)	60, 273
Msp20I	TGGCCA	1 cut(s)	482
MspA1I	CMGCKG	1 cut(s)	1263
MspCI	CTTAAG	1 cut(s)	929
MspI	CCGG	7 cut(s)	156, 369, 570, 576, 941, 1148, 1154
MspR9I	CCNGG	1 cut(s)	923
MunI	CAATTG	1 cut(s)	740
MvaI	CCWGG	1 cut(s)	923
MvnI	CGCG	3 cut(s)	194, 407, 818
NaeI	GCCGGC	1 cut(s)	942
NdeII	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
NgoMIV	GCCGGC	1 cut(s)	940
NlaIII	CATG	7 cut(s)	22, 217, 235, 481, 499, 826, 841
NlaIV	GGNNCC	3 cut(s)	568, 574, 1152
NruI	TCGCGA	2 cut(s)	194, 407
NspI	RCATGY	1 cut(s)	499
PagI	TCATGA	2 cut(s)	18, 231
PdiI	GCCGGC	1 cut(s)	942
PfeI	GAWTC	2 cut(s)	128, 341
Psp124BI	GAGCTC	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	921
PspGI	CCWGG	1 cut(s)	921
PspN4I	GGNNCC	3 cut(s)	568, 574, 1152
PspPI	GGNCC	4 cut(s)	632, 776, 1145, 1204
PstI	CTGCAG	3 cut(s)	690, 1262, 1268
PstNI	CAGNNNCTG	1 cut(s)	973
PsuI	RGATCY	3 cut(s)	24, 237, 724
PvuII	CAGCTG	1 cut(s)	1263
RruI	TCGCGA	2 cut(s)	194, 407
RsaI	GTAC	4 cut(s)	37, 115, 250, 328
RsaNI	GTAC	4 cut(s)	36, 114, 249, 327
RseI	CAYNNNNRTG	2 cut(s)	60, 273
Rsr2I	CGGWCCG	1 cut(s)	1145
RsrII	CGGWCCG	1 cut(s)	1145
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	3 cut(s)	48, 261, 930
Sau3AI	GATC	9 cut(s)	24, 147, 180, 237, 360, 393, 724, 859, 913
Sau96I	GGNCC	4 cut(s)	632, 776, 1145, 1204
ScrFI	CCNGG	1 cut(s)	923
SduI	GDGCHC	1 cut(s)	432
SfaNI	GCATC	3 cut(s)	56, 269, 741
SfcI	CTRYAG	3 cut(s)	686, 1258, 1264
SinI	GGWCC	1 cut(s)	1145
SmiMI	CAYNNNNRTG	2 cut(s)	60, 273
SmlI	CTYRAG	1 cut(s)	929
SmoI	CTYRAG	1 cut(s)	929
Sse9I	AATT	4 cut(s)	99, 312, 740, 812
SspMI	CTAG	2 cut(s)	209, 789
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	921
TaaI	ACNGT	2 cut(s)	59, 272
TaiI	ACGT	1 cut(s)	424
TasI	AATT	4 cut(s)	99, 312, 740, 812
TatI	WGTACW	4 cut(s)	35, 113, 248, 326
TauI	GCSGC	3 cut(s)	1062, 1065, 1107
TfiI	GAWTC	2 cut(s)	128, 341
Tru1I	TTAA	3 cut(s)	48, 261, 930
Tru9I	TTAA	3 cut(s)	48, 261, 930
TscAI	CASTG	2 cut(s)	62, 275
TspDTI	ATGAA	9 cut(s)	7, 35, 220, 248, 725, 950, 1004, 1013, 1034
TspGWI	ACGGA	2 cut(s)	163, 376
TspRI	CASTG	2 cut(s)	62, 275
Vha464I	CTTAAG	1 cut(s)	929
VpaK11BI	GGWCC	1 cut(s)	1145
XapI	RAATTY	1 cut(s)	812
XceI	RCATGY	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XspI	CTAG	2 cut(s)	209, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.