Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0007097

Physical Location & Seq

Genomic Coordinates Reverse (-)

46168087 .. 46171372

Gene Structure 3286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG225200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1359 bp

ATGGCCAATCAGAAGAACATGCAACTTGACAATGGCAAAGGTGGGAATAACAAAGGCCAGAACAACCAGAAGGGCGGCGGTGGAGGCGGAGGCGGAGGCGGAGGAGGGGGAGGCAACAACAATCAGCCCAAGGGTGGAGGACAACAAGGCCCAAACCCTCAGCAACAGCAACAAATTCAACAGCAAATGCAGCAGCAACTCCTGCAGCTGCAGCAGCTTCAGCAAATGAAGGGGTTGCAAGATCTGAAGCTGCCCCAATTGAAAGGGATGCAAATGGCTCCTGGTTTCAAAGGCCCGAACCCACCTAGCCAGAACCAGAAGGCTGTCAAATTCGCGGACATGGACGATGATGACATGACTGATGATGAGTATGATGATCTTGATGATGACGAAGATTATGACGACGAGGATTTTGATGACGAGCTAGTTGATCCTCGCCTGGCTCTGAATAAGATGAAGCCGGCGGCAATGGGTGGTGGTGGTGGTCAGGGGCTGCCTCCTATGATGACGAATGGAATGAACCTCCCACAGATGATGAATGTTCAGAAGGCTGGTGGTGGACAACAGAATGGGGGTGGTGGCGGCGGCGGTGGTAATGGAGGAAAGAAAGGTAGTGGCGGCGGAGGAGGAGGGGGTGCGCCGTCTCAGGGGAATATGGGTGGTGGTGGCGGTGGAAAGAAAGGCGGTGGCGGTGGTGGAGATCATGGTCAAAATCAAGCTGGGGGTGGCGGCAAAAATGGAGGCAAGAACAGTGGTGGGTTTCCCCCAAATGGTGGTGGTGGGGCACAGAACAAGAATGGTAACGGAGGCCAAGGTGGTGGTGCTAATGGCAATGGAGCTAAAAAGGGGGGTGGTGGTGGTGGAATGAGTGAGGCTCAACTTCATGCTATGATGAGCCACCAGAACATGGGTGGGAGACCTCAAGGCATGCCTGGAGGTAATGTGGGGCAGCAGATGCCTGGGATGAGCCAGATGAACATGGCAATGGGTCCAATGGGTCCAATGGGAAGCATGCCAATGGGTCAGATGGGCCAAATGCCGGCCGTTCAAGGTCTACCGGCTGCCGCCATGAGTGGCGGCGGCGGCGGCGGTGGCCCCGGTGGCTACTTCCAAGGAGCTGGGCCTGAGGCCATGCCTGGTAACCCATTCCAGAACCCACAGTTAATGGCTGCAATGATGAACCAGCAGAGAGCTATGGGCGGCGGGGACAGGTCGTTCCAGCCTATGATGTATAATAGGATTCCTTCATCGACCAACTACATGCCGCCCCAGCATTACCCATACCCTCCTCCAGCTGGTGGTGACCACTACACCCATTTCTTCAGTGATGAGAACACTTCAAGCTGCAATGTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0030312 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

452

Amino Acids

45.15

Weight (kDa)

5.86

Isoelectric Point (pI)

60.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06130 AT3G06130 AT5G19090 AT5G19090 AT5G19090 AT5G19090 AT5G19090
fragaria_vesca	FvH4_4g14520 FvH4_4g14520 FvH4_4g14520
malus_domestica	MD16G1184300.v1.1
prunus_persica	Prupe.1G151700_v2.0.a1 Prupe.1G151700_v2.0.a1
pyrus_communis	pycom13g15870
rosa_chinensis	RchiOBHm_Chr4g0418311
rosa_laevigata	RLG00000007878
rosa_multiflora	Rmu_ssc0000153.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361490
rosa_rugosa	Rorug04G0152000 Rorug04G0152100
rosa_samantha	Rh4AG213500 Rh4BG216800 Rh4CG225200 Rh4DG212100
rosa_wichuraiana	Rw4G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	773, 907, 1298
AccI	GTMKAC	1 cut(s)	1054
AccII	CGCG	1 cut(s)	335
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	2 cut(s)	3, 1041
AcsI	RAATTY	2 cut(s)	174, 329
AcuI	CTGAAG	3 cut(s)	203, 266, 1306
AfiI	CCNNNNNNNGG	8 cut(s)	134, 647, 770, 773, 907, 1039, 1295, 1298
AgsI	TTSAA	5 cut(s)	179, 262, 289, 1049, 1341
AjnI	CCWGG	5 cut(s)	280, 438, 931, 958, 1135
AloI	GAACNNNNNNTCC	2 cut(s)	1199, 1231
Alw26I	GTCTC	2 cut(s)	648, 910
AlwI	GGATC	1 cut(s)	425
AlwNI	CAGNNNCTG	1 cut(s)	493
ApoI	RAATTY	2 cut(s)	174, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	395, 427
AspLEI	GCGC	1 cut(s)	640
AspS9I	GGNCC	7 cut(s)	149, 293, 989, 998, 1030, 1094, 1121
AsuC2I	CCSGG	1 cut(s)	1098
AsuHPI	GGTGA	1 cut(s)	1313
AvaII	GGWCC	2 cut(s)	989, 998
AxyI	CCTNAGG	1 cut(s)	1125
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	5
BbvCI	CCTCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	1021
BceAI	ACGGC	2 cut(s)	625, 1028
BciT130I	CCWGG	5 cut(s)	282, 440, 933, 960, 1137
BcnI	CCSGG	1 cut(s)	1098
BcoDI	GTCTC	2 cut(s)	648, 910
BfaI	CTAG	2 cut(s)	306, 425
BfmI	CTRYAG	2 cut(s)	203, 209
BglI	GCCNNNNNGGC	1 cut(s)	1101
BglII	AGATCT	1 cut(s)	241
Bme1390I	CCNGG	6 cut(s)	282, 440, 933, 960, 1098, 1137
Bme18I	GGWCC	2 cut(s)	989, 998
BmgT120I	GGNCC	7 cut(s)	149, 293, 989, 998, 1030, 1094, 1121
BmiI	GGNNCC	4 cut(s)	279, 990, 999, 1096
BmrFI	CCNGG	6 cut(s)	282, 440, 933, 960, 1098, 1137
BmsI	GCATC	2 cut(s)	258, 945
BplI	GAGNNNNNCTC	2 cut(s)	859, 891
BpmI	CTGGAG	2 cut(s)	954, 1275
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	906
BpuMI	CCSGG	1 cut(s)	1098
BsaI	GGTCTC	1 cut(s)	910
BsaJI	CCNNGG	5 cut(s)	129, 811, 959, 1096, 1111
BsaXI	ACNNNNNCTCC	2 cut(s)	927, 957
Bsc4I	CCNNNNNNNGG	8 cut(s)	134, 647, 770, 773, 907, 1039, 1295, 1298
Bse118I	RCCGGY	3 cut(s)	460, 1039, 1057
Bse21I	CCTNAGG	1 cut(s)	1125
Bse3DI	GCAATG	5 cut(s)	474, 838, 990, 1179, 1354
BseBI	CCWGG	5 cut(s)	282, 440, 933, 960, 1137
BseDI	CCNNGG	5 cut(s)	129, 811, 959, 1096, 1111
BseGI	GGATG	2 cut(s)	273, 969
BseLI	CCNNNNNNNGG	8 cut(s)	134, 647, 770, 773, 907, 1039, 1295, 1298
BseMI	GCAATG	5 cut(s)	474, 838, 990, 1179, 1354
BseMII	CTCAG	3 cut(s)	173, 659, 1116
BseRI	GAGGAG	4 cut(s)	117, 639, 642, 1278
BseSI	GKGCMC	1 cut(s)	787
BseX3I	CGGCCG	1 cut(s)	1041
BseYI	CCCAGC	3 cut(s)	719, 1118, 1269
Bsh1236I	CGCG	1 cut(s)	335
Bsh1285I	CGRYCG	1 cut(s)	1044
BsiEI	CGRYCG	1 cut(s)	1044
BsiSI	CCGG	4 cut(s)	461, 1040, 1058, 1098
BslFI	GGGAC	1 cut(s)	1220
BslI	CCNNNNNNNGG	8 cut(s)	134, 647, 770, 773, 907, 1039, 1295, 1298
BsmAI	GTCTC	2 cut(s)	648, 910
BsmBI	CGTCTC	1 cut(s)	648
BsmFI	GGGAC	1 cut(s)	1220
Bso31I	GGTCTC	1 cut(s)	910
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp143I	GATC	4 cut(s)	241, 376, 430, 700
BspCNI	CTCAG	3 cut(s)	172, 658, 1117
BspFNI	CGCG	1 cut(s)	335
BspLI	GGNNCC	4 cut(s)	279, 990, 999, 1096
BspMAI	CTGCAG	2 cut(s)	207, 213
BspPI	GGATC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	910
BsrDI	GCAATG	5 cut(s)	474, 838, 990, 1179, 1354
BsrFI	RCCGGY	3 cut(s)	460, 1039, 1057
BssAI	RCCGGY	3 cut(s)	460, 1039, 1057
BssECI	CCNNGG	5 cut(s)	129, 811, 959, 1096, 1111
BssMI	GATC	4 cut(s)	241, 376, 430, 700
BssT1I	CCWWGG	3 cut(s)	129, 811, 1111
Bst2UI	CCWGG	5 cut(s)	282, 440, 933, 960, 1137
Bst4CI	ACNGT	2 cut(s)	752, 1161
BstAPI	GCANNNNNTGC	2 cut(s)	202, 955
BstC8I	GCNNGC	4 cut(s)	462, 929, 1013, 1041
BstDEI	CTNAG	3 cut(s)	159, 645, 1125
BstEII	GGTNACC	2 cut(s)	1139, 1301
BstF5I	GGATG	2 cut(s)	273, 969
BstFNI	CGCG	1 cut(s)	335
BstHHI	GCGC	1 cut(s)	640
BstKTI	GATC	4 cut(s)	244, 379, 433, 703
BstMAI	GTCTC	2 cut(s)	648, 910
BstMBI	GATC	4 cut(s)	241, 376, 430, 700
BstMCI	CGRYCG	1 cut(s)	1044
BstNI	CCWGG	5 cut(s)	282, 440, 933, 960, 1137
BstNSI	RCATGY	4 cut(s)	22, 931, 1015, 1264
BstPI	GGTNACC	2 cut(s)	1139, 1301
BstSCI	CCNGG	6 cut(s)	280, 438, 931, 958, 1096, 1135
BstSFI	CTRYAG	2 cut(s)	203, 209
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	1 cut(s)	335
BstX2I	RGATCY	1 cut(s)	241
BstXI	CCANNNNNNTGG	2 cut(s)	818, 1118
BstYI	RGATCY	1 cut(s)	241
BstZI	CGGCCG	1 cut(s)	1041
Bsu36I	CCTNAGG	1 cut(s)	1125
BtsCI	GGATG	2 cut(s)	273, 969
BtsIMutI	CAGTG	2 cut(s)	757, 1330
Cac8I	GCNNGC	4 cut(s)	462, 929, 1013, 1041
CaiI	CAGNNNCTG	1 cut(s)	493
CfoI	GCGC	1 cut(s)	640
Cfr10I	RCCGGY	3 cut(s)	460, 1039, 1057
Cfr13I	GGNCC	7 cut(s)	149, 293, 989, 998, 1030, 1094, 1121
CspCI	CAANNNNNGTGG	2 cut(s)	733, 768
DdeI	CTNAG	3 cut(s)	159, 645, 1125
DpnI	GATC	4 cut(s)	243, 378, 432, 702
DpnII	GATC	4 cut(s)	241, 376, 430, 700
EaeI	YGGCCR	2 cut(s)	3, 1041
EagI	CGGCCG	1 cut(s)	1041
EciI	GGCGGA	4 cut(s)	102, 108, 114, 636
EclXI	CGGCCG	1 cut(s)	1041
Eco130I	CCWWGG	3 cut(s)	129, 811, 1111
Eco31I	GGTCTC	1 cut(s)	910
Eco47I	GGWCC	2 cut(s)	989, 998
Eco52I	CGGCCG	1 cut(s)	1041
Eco57I	CTGAAG	3 cut(s)	203, 266, 1306
Eco81I	CCTNAGG	1 cut(s)	1125
Eco91I	GGTNACC	2 cut(s)	1139, 1301
EcoO65I	GGTNACC	2 cut(s)	1139, 1301
EcoRII	CCWGG	5 cut(s)	280, 438, 931, 958, 1135
EcoT14I	CCWWGG	3 cut(s)	129, 811, 1111
ErhI	CCWWGG	3 cut(s)	129, 811, 1111
Esp3I	CGTCTC	1 cut(s)	648
FaqI	GGGAC	1 cut(s)	1220
FauI	CCCGC	1 cut(s)	1196
FblI	GTMKAC	1 cut(s)	1054
FokI	GGATG	2 cut(s)	280, 976
FspBI	CTAG	2 cut(s)	306, 425
GlaI	GCGC	1 cut(s)	639
GsaI	CCCAGC	3 cut(s)	723, 1122, 1273
GsuI	CTGGAG	2 cut(s)	954, 1275
HapII	CCGG	4 cut(s)	461, 1040, 1058, 1098
HhaI	GCGC	1 cut(s)	640
Hin6I	GCGC	1 cut(s)	638
HinP1I	GCGC	1 cut(s)	638
HinfI	GANTC	1 cut(s)	1240
HpaII	CCGG	4 cut(s)	461, 1040, 1058, 1098
HphI	GGTGA	1 cut(s)	1313
Hpy166II	GTNNAC	2 cut(s)	560, 1055
Hpy188I	TCNGA	5 cut(s)	12, 246, 447, 546, 1026
Hpy188III	TCNNGA	2 cut(s)	380, 1150
Hpy8I	GTNNAC	2 cut(s)	560, 1055
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	5 cut(s)	64, 223, 313, 541, 1254
HpyCH4III	ACNGT	2 cut(s)	752, 1161
HpyCH4V	TGCA	8 cut(s)	22, 190, 205, 211, 238, 271, 1172, 1347
HpyF3I	CTNAG	3 cut(s)	159, 645, 1125
HspAI	GCGC	1 cut(s)	638
KroI	GCCGGC	2 cut(s)	460, 1039
KroNI	GCCGGC	2 cut(s)	462, 1041
Kzo9I	GATC	4 cut(s)	241, 376, 430, 700
LmnI	GCTCC	3 cut(s)	283, 836, 1115
LweI	GCATC	2 cut(s)	258, 945
MaeI	CTAG	2 cut(s)	306, 425
MaeIII	GTNAC	3 cut(s)	800, 1139, 1301
MalI	GATC	4 cut(s)	243, 378, 432, 702
MboI	GATC	4 cut(s)	241, 376, 430, 700
MboII	GAAGA	3 cut(s)	25, 404, 1312
MfeI	CAATTG	1 cut(s)	257
MflI	RGATCY	1 cut(s)	241
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	174, 257, 329
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	460, 1039
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	1163
MslI	CAYNNNNRTG	2 cut(s)	983, 1016
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	208, 1295
MspI	CCGG	4 cut(s)	461, 1040, 1058, 1098
MspR9I	CCNGG	6 cut(s)	282, 440, 933, 960, 1098, 1137
MunI	CAATTG	1 cut(s)	257
MvaI	CCWGG	5 cut(s)	282, 440, 933, 960, 1137
MvnI	CGCG	1 cut(s)	335
NaeI	GCCGGC	2 cut(s)	462, 1041
NciI	CCSGG	1 cut(s)	1098
NdeII	GATC	4 cut(s)	241, 376, 430, 700
NgoMIV	GCCGGC	2 cut(s)	460, 1039
NlaIV	GGNNCC	4 cut(s)	279, 990, 999, 1096
NmuCI	GTSAC	1 cut(s)	1301
NspI	RCATGY	4 cut(s)	22, 931, 1015, 1264
PaeI	GCATGC	2 cut(s)	931, 1015
PdiI	GCCGGC	2 cut(s)	462, 1041
PfeI	GAWTC	1 cut(s)	1240
PflMI	CCANNNNNTGG	3 cut(s)	773, 907, 1298
Psp6I	CCWGG	5 cut(s)	280, 438, 931, 958, 1135
PspEI	GGTNACC	2 cut(s)	1139, 1301
PspFI	CCCAGC	3 cut(s)	719, 1118, 1269
PspGI	CCWGG	5 cut(s)	280, 438, 931, 958, 1135
PspN4I	GGNNCC	4 cut(s)	279, 990, 999, 1096
PspPI	GGNCC	7 cut(s)	149, 293, 989, 998, 1030, 1094, 1121
PstI	CTGCAG	2 cut(s)	207, 213
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	241
PvuII	CAGCTG	2 cut(s)	208, 1295
RseI	CAYNNNNRTG	2 cut(s)	983, 1016
SaqAI	TTAA	1 cut(s)	1163
Sau3AI	GATC	4 cut(s)	241, 376, 430, 700
Sau96I	GGNCC	7 cut(s)	149, 293, 989, 998, 1030, 1094, 1121
ScrFI	CCNGG	6 cut(s)	282, 440, 933, 960, 1098, 1137
SduI	GDGCHC	1 cut(s)	787
SfaNI	GCATC	2 cut(s)	258, 945
SfcI	CTRYAG	2 cut(s)	203, 209
SinI	GGWCC	2 cut(s)	989, 998
SmiMI	CAYNNNNRTG	2 cut(s)	983, 1016
SmlI	CTYRAG	1 cut(s)	921
SmoI	CTYRAG	1 cut(s)	921
SphI	GCATGC	2 cut(s)	931, 1015
Sse9I	AATT	3 cut(s)	174, 257, 329
SspMI	CTAG	2 cut(s)	306, 425
StyD4I	CCNGG	6 cut(s)	280, 438, 931, 958, 1096, 1135
StyI	CCWWGG	3 cut(s)	129, 811, 1111
TaaI	ACNGT	2 cut(s)	752, 1161
TaqI	TCGA	1 cut(s)	1250
TasI	AATT	3 cut(s)	174, 257, 329
TfiI	GAWTC	1 cut(s)	1240
Tru1I	TTAA	1 cut(s)	1163
Tru9I	TTAA	1 cut(s)	1163
TscAI	CASTG	2 cut(s)	757, 1330
TseFI	GTSAC	1 cut(s)	1301
Tsp45I	GTSAC	1 cut(s)	1301
TspDTI	ATGAA	8 cut(s)	242, 470, 533, 551, 872, 989, 1193, 1236
TspGWI	ACGGA	1 cut(s)	819
TspRI	CASTG	2 cut(s)	757, 1330
Van91I	CCANNNNNTGG	3 cut(s)	773, 907, 1298
VpaK11BI	GGWCC	2 cut(s)	989, 998
XapI	RAATTY	2 cut(s)	174, 329
XceI	RCATGY	4 cut(s)	22, 931, 1015, 1264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	1054
XspI	CTAG	2 cut(s)	306, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.