Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007097

Physical Location & Seq

Genomic Coordinates Forward (+)

6387341 .. 6390179

Gene Structure 2839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G19090.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1764 bp

ATGAGTAAAGAAGAGTTTATGAAGATCCAGACTTGTGTTCTCAAAGTGAATATTCATTGTGATGGTTGTAAGCAGAAAGTGAAGAAAATCTTGCAGAAAATTGAAGGTGTTTTCACGACAAAGATAGACGCAGAGCTAGGGAAAGTGACTGTATCTGGAAACGTCGACCCATCAGTTCTTATCAAGAAGCTCTTGAAATCTGGTAAACATGCCGAAATCTGGGGAGCTCCCAAGGGAGGATCTAACAACAATCAGAACCAACCCAACTTGGCCAATCAGTTCAAAGCCATGCAGATTGATCATGGCGGCAAAGGCGGTGGCGGTGGTGGTGGAGGCCCTGCTAACAATAACAAAGGCCAAAAGATCGGTGGAGGCGGTGGTGGAGGAGGAGGCGGCGGCGGAGGTGGTGGTGGCGGACCACCGAAGATGGTTATTCCACAGTTAACACCACAACAGATGCAGCAGTTGAATCCTCAACAGCTTCAGCAGCTACAACAACTTCAGCAGATGAAAGGGTTTCAAGATCTGAAGCTTCCTCCTCAGTTAAAGGGTGGTCCAGGTCCGGGACCTGGCTCTGTTCCTATGAACAAGAATCCTCAGATGCCTAATAATCCTAATCAGAAGGCTGTGAAGTTCAATGTTCCTGATGATGATGATGAGGAAGATTTTAGTGATGAATTCGATGATGAGTTTGATGAAGATGACGACGAGTTTGATGATGATTTGGAAGATGATGAGTTTGACGACCACCCACCTCCGCCTAACAAAATGAAGCCTATGATGGGTGGTGGTAACATGATCATGCCTAATAACATGATGCCTAACATGATGATGCCTAACGCTCAACAAATGTTAAACGCTCATAAGAATGGTGGTGGTCCTGGACCCGCCGGAGGTAAAATTGAGGGTAAAGGTATGCCTTTTCCGGTTCAAATGGGCGGCGGTGGTGGAGGTCCCGGTGGTAAGAAGGGAGGTCCCGGTGGAGGCGGGGGTAATATGGGGAATCAGAACCAAGGAGGAGGAGGCAAGAACGGTGGAAAAGGCGGTGGTGGACATCCGTTAGATGGAAAAATGGGCGGCGGAGGTGGCGGTCCCAACGGTAATAAAGGAGGTGGCGGAGTCCAGATGAACGGAGGTCCCAACGGTGGGAAAAAGGGTGGTGGTGGAGGCGGCGGCGGAGGAGGAGGACCCATGAGTGGAGGCCTCCCGCCAGGTTTCCGGCCAATGGGAGGCGGTGGTGGTGGAGGGGGAGGACCTCAGAGCATGAGTATGCCAATGGGCGGTGCAATGGGTGGTCCAATGGGAAGTCTACCACAAATGGGTGGTGGTCCCGGTCCAATGAGTAATAATATGCAGGCGGTTCAAGGATTACCCGCAATGGGTCCAGGAGGTGGTGGTGGCGGTGGCCCATCCGCAGAAGCACCACCAGGATATTTCCAAGGCCAAGTCTCCGGAAACGGCGGAGGCGGACAAGACTCAATGCCGGGAAACCCCTACTTACAACAGCAGCAACAGCAACAACAACAACAATACTTAGCGGCGGTTATGAACCAGCAACGATCCATGGGAAACGAACGGTTCCAGCCGATGATGTACGCTAGACCACCGCCAGCTGTCAACTATATGCCACCACAACCGCAACCGCACCAACAACATCCATACCCGTATCCATATCCGTATCCACCCCAGTATCCGCCTCACAATGGTGACCAGTATTCTGATTACTTCAATGACGAGAACACATCAAGCTGCAATATTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009506 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0030054 GO:0030312 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055044 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0071944 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

587

Amino Acids

59.62

Weight (kDa)

6.32

Isoelectric Point (pI)

65.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	14 - 70	3.4e-12	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007097)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06130 AT3G06130 AT5G19090 AT5G19090 AT5G19090 AT5G19090 AT5G19090
fragaria_vesca	FvH4_4g14520 FvH4_4g14520 FvH4_4g14520
malus_domestica	MD16G1184300.v1.1
prunus_persica	Prupe.1G151700_v2.0.a1 Prupe.1G151700_v2.0.a1
pyrus_communis	pycom13g15870
rosa_chinensis	RchiOBHm_Chr4g0418311
rosa_laevigata	RLG00000007878
rosa_multiflora	Rmu_ssc0000153.1_g000003
rosa_roxburghii	Rroxscaffold_5G00361490
rosa_rugosa	Rorug04G0152000 Rorug04G0152100
rosa_samantha	Rh4AG213500 Rh4BG216800 Rh4CG225200 Rh4DG212100
rosa_wichuraiana	Rw4G018140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1391
AccI	GTMKAC	2 cut(s)	165, 1309
AccIII	TCCGGA	1 cut(s)	1451
AclWI	GGATC	3 cut(s)	19, 247, 1554
AcoI	YGGCCR	2 cut(s)	270, 1220
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	3 cut(s)	467, 485, 548
AfaI	GTAC	1 cut(s)	1595
AgsI	TTSAA	9 cut(s)	104, 196, 283, 469, 521, 637, 932, 1364, 1729
AjnI	CCWGG	6 cut(s)	556, 568, 880, 1210, 1384, 1426
AleI	CACNNNNGTG	1 cut(s)	1704
AluBI	AGCT	8 cut(s)	136, 190, 227, 481, 490, 532, 1613, 1749
AluI	AGCT	8 cut(s)	136, 190, 227, 481, 490, 532, 1613, 1749
Alw21I	GWGCWC	1 cut(s)	229
Alw26I	GTCTC	1 cut(s)	1453
AlwI	GGATC	3 cut(s)	19, 247, 1554
Aor13HI	TCCGGA	1 cut(s)	1451
AoxI	GGCC	7 cut(s)	270, 334, 355, 1201, 1220, 1405, 1441
ApeKI	GCWGC	4 cut(s)	460, 487, 1507, 1749
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AsuC2I	CCSGG	5 cut(s)	564, 957, 978, 1332, 1485
AsuHPI	GGTGA	1 cut(s)	1718
BaeI	ACNNNNGTAYC	2 cut(s)	1673, 1706
BalI	TGGCCA	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	229
BbvI	GCAGC	4 cut(s)	472, 499, 1519, 1736
BccI	CCATC	6 cut(s)	56, 178, 421, 775, 1058, 1417
BceAI	ACGGC	1 cut(s)	1474
BciT130I	CCWGG	6 cut(s)	558, 570, 882, 1212, 1386, 1428
BciVI	GTATCC	3 cut(s)	1677, 1689, 1701
BclI	TGATCA	2 cut(s)	298, 798
BcnI	CCSGG	5 cut(s)	564, 957, 978, 1332, 1485
BcoDI	GTCTC	1 cut(s)	1453
BfaI	CTAG	2 cut(s)	137, 1599
BfuI	GTATCC	3 cut(s)	1677, 1689, 1701
BglII	AGATCT	1 cut(s)	523
BmrI	ACTGGG	1 cut(s)	1681
BmsI	GCATC	4 cut(s)	447, 591, 807, 822
BmuI	ACTGGG	1 cut(s)	1681
BpuMI	CCSGG	5 cut(s)	564, 957, 978, 1332, 1485
BsaJI	CCNNGG	4 cut(s)	231, 1012, 1438, 1563
BsaWI	WCCGGW	2 cut(s)	925, 1451
Bse1I	ACTGG	2 cut(s)	1687, 1711
Bse3DI	GCAATG	2 cut(s)	1293, 1383
BseAI	TCCGGA	1 cut(s)	1451
BseBI	CCWGG	6 cut(s)	558, 570, 882, 1212, 1386, 1428
BseDI	CCNNGG	4 cut(s)	231, 1012, 1438, 1563
BseGI	GGATG	3 cut(s)	1054, 1409, 1654
BseMI	GCAATG	2 cut(s)	1293, 1383
BseMII	CTCAG	3 cut(s)	554, 611, 1271
BseNI	ACTGG	2 cut(s)	1687, 1711
BseRI	GAGGAG	7 cut(s)	399, 402, 528, 1032, 1035, 1194, 1197
BseXI	GCAGC	4 cut(s)	472, 499, 1519, 1736
BshFI	GGCC	7 cut(s)	272, 336, 357, 1203, 1222, 1407, 1443
BsiHKAI	GWGCWC	1 cut(s)	229
BsiSI	CCGG	9 cut(s)	563, 891, 926, 957, 978, 1219, 1332, 1452, 1484
BslFI	GGGAC	6 cut(s)	579, 939, 960, 1077, 1122, 1314
BsmAI	GTCTC	1 cut(s)	1453
BsmFI	GGGAC	6 cut(s)	579, 939, 960, 1077, 1122, 1314
BsnI	GGCC	7 cut(s)	272, 336, 357, 1203, 1222, 1407, 1443
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp13I	TCCGGA	1 cut(s)	1451
Bsp143I	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
Bsp19I	CCATGG	1 cut(s)	1563
BspANI	GGCC	7 cut(s)	272, 336, 357, 1203, 1222, 1407, 1443
BspCNI	CTCAG	3 cut(s)	553, 610, 1270
BspEI	TCCGGA	1 cut(s)	1451
BspPI	GGATC	3 cut(s)	19, 247, 1554
BsrDI	GCAATG	2 cut(s)	1293, 1383
BsrI	ACTGG	2 cut(s)	1687, 1711
BssECI	CCNNGG	4 cut(s)	231, 1012, 1438, 1563
BssMI	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
BssT1I	CCWWGG	4 cut(s)	231, 1012, 1438, 1563
Bst2UI	CCWGG	6 cut(s)	558, 570, 882, 1212, 1386, 1428
Bst4CI	ACNGT	6 cut(s)	151, 441, 1034, 1100, 1145, 1578
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	2 cut(s)	1356, 1611
BstDEI	CTNAG	4 cut(s)	540, 597, 1257, 1534
BstDSI	CCRYGG	1 cut(s)	1563
BstEII	GGTNACC	1 cut(s)	1706
BstF5I	GGATG	3 cut(s)	1054, 1409, 1654
BstKTI	GATC	7 cut(s)	27, 242, 301, 366, 526, 801, 1562
BstMAI	GTCTC	1 cut(s)	1453
BstMBI	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
BstMWI	GCNNNNNNNGC	4 cut(s)	312, 487, 1086, 1513
BstNI	CCWGG	6 cut(s)	558, 570, 882, 1212, 1386, 1428
BstNSI	RCATGY	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	1706
BstV1I	GCAGC	4 cut(s)	472, 499, 1519, 1736
BstX2I	RGATCY	3 cut(s)	24, 239, 523
BstYI	RGATCY	3 cut(s)	24, 239, 523
BsuI	GTATCC	3 cut(s)	1677, 1689, 1701
BsuRI	GGCC	7 cut(s)	272, 336, 357, 1203, 1222, 1407, 1443
BtgI	CCRYGG	1 cut(s)	1563
BtsCI	GGATG	3 cut(s)	1054, 1409, 1654
Cac8I	GCNNGC	2 cut(s)	1356, 1611
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	1594
CspCI	CAANNNNNGTGG	4 cut(s)	298, 333, 1015, 1050
CviQI	GTAC	1 cut(s)	1594
DdeI	CTNAG	4 cut(s)	540, 597, 1257, 1534
DpnI	GATC	7 cut(s)	26, 241, 300, 365, 525, 800, 1561
DpnII	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
EaeI	YGGCCR	2 cut(s)	270, 1220
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EciI	GGCGGA	9 cut(s)	414, 429, 747, 1095, 1131, 1191, 1476, 1482, 1683
Ecl136II	GAGCTC	1 cut(s)	227
Eco130I	CCWWGG	4 cut(s)	231, 1012, 1438, 1563
Eco147I	AGGCCT	1 cut(s)	1203
Eco24I	GRGCYC	1 cut(s)	229
Eco53kI	GAGCTC	1 cut(s)	227
Eco57I	CTGAAG	3 cut(s)	467, 485, 548
Eco91I	GGTNACC	1 cut(s)	1706
EcoICRI	GAGCTC	1 cut(s)	227
EcoO109I	RGGNCCY	7 cut(s)	335, 566, 953, 974, 1136, 1187, 1253
EcoO65I	GGTNACC	1 cut(s)	1706
EcoRI	GAATTC	1 cut(s)	677
EcoRII	CCWGG	6 cut(s)	556, 568, 880, 1210, 1384, 1426
EcoT14I	CCWWGG	4 cut(s)	231, 1012, 1438, 1563
EcoT38I	GRGCYC	1 cut(s)	229
ErhI	CCWWGG	4 cut(s)	231, 1012, 1438, 1563
FalI	AAGNNNNNCTT	4 cut(s)	74, 106, 176, 208
FaqI	GGGAC	6 cut(s)	579, 939, 960, 1077, 1122, 1314
FauI	CCCGC	4 cut(s)	895, 980, 1215, 1381
FbaI	TGATCA	2 cut(s)	298, 798
FblI	GTMKAC	2 cut(s)	165, 1309
FokI	GGATG	3 cut(s)	1041, 1396, 1641
FriOI	GRGCYC	1 cut(s)	229
FspBI	CTAG	2 cut(s)	137, 1599
HaeIII	GGCC	7 cut(s)	272, 336, 357, 1203, 1222, 1407, 1443
HapII	CCGG	9 cut(s)	563, 891, 926, 957, 978, 1219, 1332, 1452, 1484
HgaI	GACGC	1 cut(s)	137
HincII	GTYRAC	3 cut(s)	166, 444, 1618
HindII	GTYRAC	3 cut(s)	166, 444, 1618
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	5 cut(s)	469, 592, 1003, 1119, 1475
HpaI	GTTAAC	1 cut(s)	444
HpaII	CCGG	9 cut(s)	563, 891, 926, 957, 978, 1219, 1332, 1452, 1484
HphI	GGTGA	1 cut(s)	1718
Hpy166II	GTNNAC	6 cut(s)	166, 206, 444, 1052, 1310, 1618
Hpy188I	TCNGA	7 cut(s)	255, 528, 600, 621, 1008, 1260, 1720
Hpy188III	TCNNGA	9 cut(s)	28, 115, 156, 184, 193, 521, 644, 1123, 1452
Hpy8I	GTNNAC	6 cut(s)	166, 206, 444, 1052, 1310, 1618
Hpy99I	CGWCG	2 cut(s)	167, 710
HpyAV	CCTTC	3 cut(s)	98, 616, 961
HpyCH4III	ACNGT	6 cut(s)	151, 441, 1034, 1100, 1145, 1578
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	6 cut(s)	94, 292, 460, 1286, 1354, 1752
HpyF10VI	GCNNNNNNNGC	4 cut(s)	312, 487, 1086, 1513
HpyF3I	CTNAG	4 cut(s)	540, 597, 1257, 1534
HpySE526I	ACGT	1 cut(s)	162
Kpn2I	TCCGGA	1 cut(s)	1451
Ksp22I	TGATCA	2 cut(s)	298, 798
KspAI	GTTAAC	1 cut(s)	444
Kzo9I	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
LmnI	GCTCC	2 cut(s)	224, 232
Lsp1109I	GCAGC	4 cut(s)	472, 499, 1519, 1736
LweI	GCATC	4 cut(s)	447, 591, 807, 822
MaeI	CTAG	2 cut(s)	137, 1599
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	3 cut(s)	145, 791, 1706
MalI	GATC	7 cut(s)	26, 241, 300, 365, 525, 800, 1561
MboI	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
MboII	GAAGA	7 cut(s)	23, 34, 94, 436, 674, 710, 740
MflI	RGATCY	3 cut(s)	24, 239, 523
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	3 cut(s)	99, 677, 900
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	1128, 1469
Mox20I	TGGCCA	1 cut(s)	272
MroI	TCCGGA	1 cut(s)	1451
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	3 cut(s)	443, 545, 854
MslI	CAYNNNNRTG	6 cut(s)	60, 800, 830, 867, 1268, 1704
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	1613
MspI	CCGG	9 cut(s)	563, 891, 926, 957, 978, 1219, 1332, 1452, 1484
MvaI	CCWGG	6 cut(s)	558, 570, 882, 1212, 1386, 1428
MwoI	GCNNNNNNNGC	4 cut(s)	312, 487, 1086, 1513
NciI	CCSGG	5 cut(s)	564, 957, 978, 1332, 1485
NcoI	CCATGG	1 cut(s)	1563
NdeII	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
NmuCI	GTSAC	2 cut(s)	145, 1706
NspI	RCATGY	1 cut(s)	212
OliI	CACNNNNGTG	1 cut(s)	1704
PceI	AGGCCT	1 cut(s)	1203
PfeI	GAWTC	3 cut(s)	469, 592, 1003
PflMI	CCANNNNNTGG	1 cut(s)	1391
PfoI	TCCNGGA	3 cut(s)	562, 880, 1384
PleI	GAGTC	2 cut(s)	1127, 1469
PpsI	GAGTC	2 cut(s)	1127, 1469
PpuMI	RGGWCCY	6 cut(s)	566, 953, 974, 1136, 1187, 1253
Psp124BI	GAGCTC	1 cut(s)	229
Psp5II	RGGWCCY	6 cut(s)	566, 953, 974, 1136, 1187, 1253
Psp6I	CCWGG	6 cut(s)	556, 568, 880, 1210, 1384, 1426
PspEI	GGTNACC	1 cut(s)	1706
PspGI	CCWGG	6 cut(s)	556, 568, 880, 1210, 1384, 1426
PspPPI	RGGWCCY	6 cut(s)	566, 953, 974, 1136, 1187, 1253
PsuI	RGATCY	3 cut(s)	24, 239, 523
PvuII	CAGCTG	1 cut(s)	1613
RsaI	GTAC	1 cut(s)	1595
RsaNI	GTAC	1 cut(s)	1594
RseI	CAYNNNNRTG	6 cut(s)	60, 800, 830, 867, 1268, 1704
SacI	GAGCTC	1 cut(s)	229
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	443, 545, 854
Sau3AI	GATC	7 cut(s)	24, 239, 298, 363, 523, 798, 1559
SchI	GAGTC	2 cut(s)	1128, 1469
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	4 cut(s)	447, 591, 807, 822
SmiMI	CAYNNNNRTG	6 cut(s)	60, 800, 830, 867, 1268, 1704
Sse9I	AATT	3 cut(s)	99, 677, 900
SseBI	AGGCCT	1 cut(s)	1203
SspI	AATATT	2 cut(s)	52, 1756
SspMI	CTAG	2 cut(s)	137, 1599
SstI	GAGCTC	1 cut(s)	229
StuI	AGGCCT	1 cut(s)	1203
StyI	CCWWGG	4 cut(s)	231, 1012, 1438, 1563
TaaI	ACNGT	6 cut(s)	151, 441, 1034, 1100, 1145, 1578
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	2 cut(s)	165, 681
TasI	AATT	3 cut(s)	99, 677, 900
TauI	GCSGC	8 cut(s)	309, 396, 399, 942, 1080, 1173, 1176, 1541
TfiI	GAWTC	3 cut(s)	469, 592, 1003
Tru1I	TTAA	3 cut(s)	443, 545, 854
Tru9I	TTAA	3 cut(s)	443, 545, 854
TseFI	GTSAC	2 cut(s)	145, 1706
TseI	GCWGC	4 cut(s)	460, 487, 1507, 1749
Tsp45I	GTSAC	2 cut(s)	145, 1706
TspDTI	ATGAA	9 cut(s)	35, 44, 524, 599, 690, 711, 785, 1142, 1562
TspGWI	ACGGA	3 cut(s)	1047, 1146, 1665
Van91I	CCANNNNNTGG	1 cut(s)	1391
XapI	RAATTY	1 cut(s)	677
XceI	RCATGY	1 cut(s)	212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XmiI	GTMKAC	2 cut(s)	165, 1309
XspI	CTAG	2 cut(s)	137, 1599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.