FvH4_4g14520

Heavy-metal-associated domain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
18182232 .. 18185158
2927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14520.t1

Sequence Viewer

Length: 1599 bp
ATGAGTAAAGAAGAGTTCTTGAAGATCCAGAAATGTGTTCTCAAAGTTAACATTCACTGTGATGGATGCAAGCACAAGGTCAAGAAAATCTTGCAGAAAATTGAAGGGGTTTTTACAACCGAGATAGATTCCGAACAGGGGAAGGTGACCGTTTCCGGCAATGTCGACCCCTCTGTTCTGATCAAGAAGCTCGCAAAATCAGGGAAACATGCAGAAGTTTGGGGCGCTCCGAAAACCAACAACAATAATCAGAACCAGAGCAACCTGGCCAATCAGTTCAAAAACATGCAACTTGATAATGGCAAAGGTGGGAATAACAAAGCCCAGAACAACCAGAAGGGCGGCGGAGGCGGAGGAGGAGGAGGTAACAACAACCAGTCTAAAGGTGGACAACAAGGCCCGAACCCACAGCAACAGCAACAGCAACACCAACAGCAGCAAATGCAGCAACTACAGCAGCTGCAACAGCTTCAGCAAATGAAAGGATTTCAAGATCTGAAGTTGCCTCAATTGAAAGGGATGCAAATGCCTCCTGGTTTTAAAGGGCCGAACCCACCTAACCAGAACCAGAAGGCCGTCAAATTCGCGGATTTGGATGATGATGACATGACTGATGATGAGTATGATGACCTTGATGATGATGACGACTATGACGACGACGATTTTGATGACGAGCTGGATGATCCTCGAATGCCTCTCAATAAGATGAAGTCGGCGATGGGTGGTGGTGGTGGTCAGGGGCTGCCTCCTATGATGATGAATGGGATGAACCACCCTCAGATGATGAATCCCCAGAAGGCTGGTGGTGGTCAACCGAATGGTGGAAAGAAAGGTGGCGGAGGAGGGGGTGCGCCGGCTCAGGTGAATTTGGGTGGTGGCGGCGGTGGAAAGAAAGGTGGTGGCGGTGGCGGAGATCATGGTCAAAATCAAGCTGGCAAGAATGGAGGGAAGAACAGTGGTGGGTTCCCCCCAAATGGTGGTGGTGGGGCGCAGAACAAGAATGGTCAGGGAGGCCAAGGTGGTGGTGGTGCTAATGGGGGTAATAATGGCAATGGAGCTAAAAAGGGTGGTGGAGGTGGTGGTAATGGAGGAGGTGGTGGTGGTGGTGGAATGAGTGAGGCTCAACTACATGCTATGATGAGCCACCAGAACATGGGTGGGAGACCTCAAGGCATGCCTGGAGGTAATGTGGGACAGCAGATGCCTGGGATGAGCCAGATGAACATGGCAATGGGTCCAATGGGAAGCATGCCAATGAGCCAAATGGGTCAGATGGGTCAAATGCCGGCGGTTCAAGGTCTGCCGGCTGCCGCCATGAATGGCGGAGGCGGTGGTGGCCCCAGCGGCTACTTCCAAGGAGCCGGGCCTGAAGCCATGGCTGGTAATCCATACCAGCAACAACAGTACATGGCAGCAATGCTGAACCAGCAAAGAGCTATGGGCGGTGACAGGAATTTCCAGCCTATGATGTACGCTAGGCCTCCTCCAGCAGTCAACTACATGCCGCCACACCCTTACCCATACCCTCCTCCAAATGGCGGTGACCATTACACTCATTTCTTCAGCGATGAGAACACTTCGAGCTGCAATGTGATGTGA

Protein Analysis

533

Amino Acids

54.98

Weight (kDa)

7.67

Isoelectric Point (pI)

54.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 14 - 70 8.8e-13 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 977, 1153
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 587
AclWI GGATC 2 cut(s) 19, 677
AcoI YGGCCR 1 cut(s) 267
AcsI RAATTY 3 cut(s) 581, 865, 1453
AcuI CTGAAG 4 cut(s) 455, 518, 1389, 1546
AfaI GTAC 2 cut(s) 1406, 1472
AfiI CCNNNNNNNGG 7 cut(s) 138, 821, 974, 977, 1153, 1535, 1538
AgsI TTSAA 6 cut(s) 22, 104, 280, 491, 514, 1295
AjnI CCWGG 4 cut(s) 264, 532, 1177, 1204
AluBI AGCT 8 cut(s) 190, 460, 469, 676, 932, 1058, 1436, 1584
AluI AGCT 8 cut(s) 190, 460, 469, 676, 932, 1058, 1436, 1584
Alw26I GTCTC 1 cut(s) 1156
AlwI GGATC 2 cut(s) 19, 677
AlwNI CAGNNNCTG 2 cut(s) 460, 742
AoxI GGCC 8 cut(s) 267, 397, 545, 573, 1012, 1336, 1364, 1478
ApeKI GCWGC 8 cut(s) 436, 445, 457, 460, 742, 1307, 1412, 1584
ApoI RAATTY 3 cut(s) 581, 865, 1453
ArsI GACNNNNNNTTYG 2 cut(s) 647, 679
AspLEI GCGC 3 cut(s) 227, 853, 991
AspS9I GGNCC 5 cut(s) 398, 545, 1235, 1337, 1364
AsuC2I CCSGG 1 cut(s) 1363
AsuHPI GGTGA 4 cut(s) 157, 874, 1457, 1553
AvaII GGWCC 1 cut(s) 1235
BalI TGGCCA 1 cut(s) 269
BbvI GCAGC 8 cut(s) 447, 448, 457, 469, 729, 1294, 1424, 1571
BccI CCATC 3 cut(s) 56, 712, 1267
BceAI ACGGC 1 cut(s) 560
BciT130I CCWGG 4 cut(s) 266, 534, 1179, 1206
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 1363
BcoDI GTCTC 1 cut(s) 1156
BfaI CTAG 1 cut(s) 1476
BfmI CTRYAG 1 cut(s) 452
BfoI RGCGCY 1 cut(s) 228
BglI GCCNNNNNGGC 1 cut(s) 1344
BglII AGATCT 1 cut(s) 493
Bme1390I CCNGG 5 cut(s) 266, 534, 1179, 1206, 1363
Bme18I GGWCC 1 cut(s) 1235
BmgT120I GGNCC 5 cut(s) 398, 545, 1235, 1337, 1364
BmiI GGNNCC 4 cut(s) 965, 1236, 1339, 1360
BmrFI CCNGG 5 cut(s) 266, 534, 1179, 1206, 1363
BmsI GCATC 3 cut(s) 56, 510, 1191
BplI GAGNNNNNCTC 2 cut(s) 1105, 1137
BpmI CTGGAG 2 cut(s) 1200, 1470
Bpu10I CCTNAGC 1 cut(s) 858
BpuEI CTTGAG 1 cut(s) 1152
BpuMI CCSGG 1 cut(s) 1363
BsaI GGTCTC 1 cut(s) 1156
BsaJI CCNNGG 4 cut(s) 1015, 1205, 1354, 1374
BsaXI ACNNNNNCTCC 2 cut(s) 1173, 1203
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 821, 974, 977, 1153, 1535, 1538
Bse118I RCCGGY 3 cut(s) 853, 1285, 1303
Bse1I ACTGG 1 cut(s) 376
Bse3DI GCAATG 5 cut(s) 166, 1057, 1236, 1422, 1594
BseBI CCWGG 4 cut(s) 266, 534, 1179, 1206
BseDI CCNNGG 4 cut(s) 1015, 1205, 1354, 1374
BseGI GGATG 6 cut(s) 71, 525, 601, 685, 771, 1215
BseLI CCNNNNNNNGG 7 cut(s) 138, 821, 974, 977, 1153, 1535, 1538
BseMI GCAATG 5 cut(s) 166, 1057, 1236, 1422, 1594
BseMII CTCAG 2 cut(s) 791, 872
BseNI ACTGG 1 cut(s) 376
BseRI GAGGAG 7 cut(s) 369, 372, 375, 855, 1104, 1473, 1518
BseXI GCAGC 8 cut(s) 447, 448, 457, 469, 729, 1294, 1424, 1571
BseYI CCCAGC 1 cut(s) 1340
Bsh1236I CGCG 1 cut(s) 587
BshFI GGCC 8 cut(s) 269, 399, 547, 575, 1014, 1338, 1366, 1480
BsiSI CCGG 5 cut(s) 156, 854, 1286, 1304, 1362
BslFI GGGAC 1 cut(s) 1206
BslI CCNNNNNNNGG 7 cut(s) 138, 821, 974, 977, 1153, 1535, 1538
BsmAI GTCTC 1 cut(s) 1156
BsmFI GGGAC 1 cut(s) 1206
BsmI GAATGC 1 cut(s) 696
BsnI GGCC 8 cut(s) 269, 399, 547, 575, 1014, 1338, 1366, 1480
Bso31I GGTCTC 1 cut(s) 1156
Bsp143I GATC 5 cut(s) 24, 180, 493, 682, 913
Bsp19I CCATGG 1 cut(s) 1374
BspANI GGCC 8 cut(s) 269, 399, 547, 575, 1014, 1338, 1366, 1480
BspCNI CTCAG 2 cut(s) 790, 871
BspFNI CGCG 1 cut(s) 587
BspLI GGNNCC 4 cut(s) 965, 1236, 1339, 1360
BspPI GGATC 2 cut(s) 19, 677
BspTNI GGTCTC 1 cut(s) 1156
BsrDI GCAATG 5 cut(s) 166, 1057, 1236, 1422, 1594
BsrFI RCCGGY 3 cut(s) 853, 1285, 1303
BsrI ACTGG 1 cut(s) 376
BssAI RCCGGY 3 cut(s) 853, 1285, 1303
BssECI CCNNGG 4 cut(s) 1015, 1205, 1354, 1374
BssMI GATC 5 cut(s) 24, 180, 493, 682, 913
BssT1I CCWWGG 3 cut(s) 1015, 1354, 1374
Bst2UI CCWGG 4 cut(s) 266, 534, 1179, 1206
Bst4CI ACNGT 4 cut(s) 59, 151, 956, 1404
Bst6I CTCTTC 1 cut(s) 6
BstAPI GCANNNNNTGC 1 cut(s) 442
BstC8I GCNNGC 8 cut(s) 71, 192, 855, 934, 1175, 1250, 1287, 1305
BstDEI CTNAG 2 cut(s) 777, 858
BstDSI CCRYGG 1 cut(s) 1374
BstEII GGTNACC 2 cut(s) 145, 1541
BstF5I GGATG 6 cut(s) 71, 525, 601, 685, 771, 1215
BstFNI CGCG 1 cut(s) 587
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 3 cut(s) 227, 853, 991
BstKTI GATC 5 cut(s) 27, 183, 496, 685, 916
BstMAI GTCTC 1 cut(s) 1156
BstMBI GATC 5 cut(s) 24, 180, 493, 682, 913
BstMWI GCNNNNNNNGC 8 cut(s) 348, 442, 445, 454, 466, 1335, 1344, 1426
BstNI CCWGG 4 cut(s) 266, 534, 1179, 1206
BstNSI RCATGY 6 cut(s) 212, 289, 1133, 1177, 1252, 1504
BstPI GGTNACC 2 cut(s) 145, 1541
BstSCI CCNGG 5 cut(s) 264, 532, 1177, 1204, 1361
BstSFI CTRYAG 1 cut(s) 452
BstUI CGCG 1 cut(s) 587
BstV1I GCAGC 8 cut(s) 447, 448, 457, 469, 729, 1294, 1424, 1571
BstX2I RGATCY 2 cut(s) 24, 493
BstXI CCANNNNNNTGG 2 cut(s) 800, 1022
BstYI RGATCY 2 cut(s) 24, 493
BsuRI GGCC 8 cut(s) 269, 399, 547, 575, 1014, 1338, 1366, 1480
BtgI CCRYGG 1 cut(s) 1374
BtgZI GCGATG 2 cut(s) 731, 1581
BtsCI GGATG 6 cut(s) 71, 525, 601, 685, 771, 1215
BtsIMutI CAGTG 2 cut(s) 55, 961
Cac8I GCNNGC 8 cut(s) 71, 192, 855, 934, 1175, 1250, 1287, 1305
CaiI CAGNNNCTG 2 cut(s) 460, 742
CfoI GCGC 3 cut(s) 227, 853, 991
Cfr10I RCCGGY 3 cut(s) 853, 1285, 1303
Cfr13I GGNCC 5 cut(s) 398, 545, 1235, 1337, 1364
Csp6I GTAC 2 cut(s) 1405, 1471
CviQI GTAC 2 cut(s) 1405, 1471
DdeI CTNAG 2 cut(s) 777, 858
DpnI GATC 5 cut(s) 26, 182, 495, 684, 915
DpnII GATC 5 cut(s) 24, 180, 493, 682, 913
DraI TTTAAA 1 cut(s) 541
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
EciI GGCGGA 5 cut(s) 360, 366, 852, 924, 1338
Eco130I CCWWGG 3 cut(s) 1015, 1354, 1374
Eco147I AGGCCT 1 cut(s) 1480
Eco31I GGTCTC 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 1235
Eco57I CTGAAG 4 cut(s) 455, 518, 1389, 1546
Eco91I GGTNACC 2 cut(s) 145, 1541
EcoO65I GGTNACC 2 cut(s) 145, 1541
EcoRII CCWGG 4 cut(s) 264, 532, 1177, 1204
EcoT14I CCWWGG 3 cut(s) 1015, 1354, 1374
ErhI CCWWGG 3 cut(s) 1015, 1354, 1374
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 1206
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 1 cut(s) 165
FokI GGATG 6 cut(s) 78, 532, 608, 692, 778, 1222
FspBI CTAG 1 cut(s) 1476
GlaI GCGC 3 cut(s) 226, 852, 990
GsaI CCCAGC 1 cut(s) 1344
GsuI CTGGAG 2 cut(s) 1200, 1470
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 8 cut(s) 269, 399, 547, 575, 1014, 1338, 1366, 1480
HapII CCGG 5 cut(s) 156, 854, 1286, 1304, 1362
HhaI GCGC 3 cut(s) 227, 853, 991
Hin6I GCGC 3 cut(s) 225, 851, 989
HinP1I GCGC 3 cut(s) 225, 851, 989
HincII GTYRAC 4 cut(s) 49, 166, 812, 1495
HindII GTYRAC 4 cut(s) 49, 166, 812, 1495
HinfI GANTC 2 cut(s) 128, 787
HpaI GTTAAC 1 cut(s) 49
HpaII CCGG 5 cut(s) 156, 854, 1286, 1304, 1362
HphI GGTGA 4 cut(s) 157, 874, 1457, 1553
Hpy166II GTNNAC 5 cut(s) 49, 166, 389, 812, 1495
Hpy188I TCNGA 7 cut(s) 133, 180, 231, 252, 498, 780, 1272
Hpy188III TCNNGA 5 cut(s) 19, 28, 82, 184, 491
Hpy8I GTNNAC 5 cut(s) 49, 166, 389, 812, 1495
Hpy99I CGWCG 2 cut(s) 659, 662
HpyAV CCTTC 5 cut(s) 98, 136, 331, 565, 790
HpyCH4III ACNGT 4 cut(s) 59, 151, 956, 1404
HpyCH4V TGCA 8 cut(s) 69, 94, 212, 289, 445, 463, 523, 1587
HpyF10VI GCNNNNNNNGC 8 cut(s) 348, 442, 445, 454, 466, 1335, 1344, 1426
HpyF3I CTNAG 2 cut(s) 777, 858
HspAI GCGC 3 cut(s) 225, 851, 989
KroI GCCGGC 3 cut(s) 853, 1285, 1303
KroNI GCCGGC 3 cut(s) 855, 1287, 1305
Ksp22I TGATCA 1 cut(s) 180
KspAI GTTAAC 1 cut(s) 49
Kzo9I GATC 5 cut(s) 24, 180, 493, 682, 913
LmnI GCTCC 3 cut(s) 232, 1055, 1358
Lsp1109I GCAGC 8 cut(s) 447, 448, 457, 469, 729, 1294, 1424, 1571
LweI GCATC 3 cut(s) 56, 510, 1191
MaeI CTAG 1 cut(s) 1476
MaeIII GTNAC 4 cut(s) 145, 365, 1445, 1541
MalI GATC 5 cut(s) 26, 182, 495, 684, 915
MboI GATC 5 cut(s) 24, 180, 493, 682, 913
MboII GAAGA 4 cut(s) 23, 34, 961, 1552
MfeI CAATTG 1 cut(s) 509
MflI RGATCY 2 cut(s) 24, 493
MlsI TGGCCA 1 cut(s) 269
MluCI AATT 5 cut(s) 99, 509, 581, 865, 1453
MluNI TGGCCA 1 cut(s) 269
Mox20I TGGCCA 1 cut(s) 269
MroNI GCCGGC 3 cut(s) 853, 1285, 1303
MscI TGGCCA 1 cut(s) 269
MseI TTAA 2 cut(s) 48, 540
MslI CAYNNNNRTG 3 cut(s) 60, 1229, 1253
Msp20I TGGCCA 1 cut(s) 269
MspA1I CMGCKG 2 cut(s) 460, 1344
MspI CCGG 5 cut(s) 156, 854, 1286, 1304, 1362
MspR9I CCNGG 5 cut(s) 266, 534, 1179, 1206, 1363
MunI CAATTG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 696
MvaI CCWGG 4 cut(s) 266, 534, 1179, 1206
MvnI CGCG 1 cut(s) 587
MwoI GCNNNNNNNGC 8 cut(s) 348, 442, 445, 454, 466, 1335, 1344, 1426
NaeI GCCGGC 3 cut(s) 855, 1287, 1305
NciI CCSGG 1 cut(s) 1363
NcoI CCATGG 1 cut(s) 1374
NdeII GATC 5 cut(s) 24, 180, 493, 682, 913
NgoMIV GCCGGC 3 cut(s) 853, 1285, 1303
NlaIV GGNNCC 4 cut(s) 965, 1236, 1339, 1360
NmuCI GTSAC 3 cut(s) 145, 1445, 1541
NspI RCATGY 6 cut(s) 212, 289, 1133, 1177, 1252, 1504
PaeI GCATGC 2 cut(s) 1177, 1252
PceI AGGCCT 1 cut(s) 1480
PcsI WCGNNNNNNNCGW 1 cut(s) 651
PctI GAATGC 1 cut(s) 696
PdiI GCCGGC 3 cut(s) 855, 1287, 1305
PfeI GAWTC 2 cut(s) 128, 787
PflMI CCANNNNNTGG 2 cut(s) 977, 1153
Psp6I CCWGG 4 cut(s) 264, 532, 1177, 1204
PspEI GGTNACC 2 cut(s) 145, 1541
PspFI CCCAGC 1 cut(s) 1340
PspGI CCWGG 4 cut(s) 264, 532, 1177, 1204
PspN4I GGNNCC 4 cut(s) 965, 1236, 1339, 1360
PspPI GGNCC 5 cut(s) 398, 545, 1235, 1337, 1364
PstNI CAGNNNCTG 2 cut(s) 460, 742
PsuI RGATCY 2 cut(s) 24, 493
PvuII CAGCTG 1 cut(s) 460
RsaI GTAC 2 cut(s) 1406, 1472
RsaNI GTAC 2 cut(s) 1405, 1471
RseI CAYNNNNRTG 3 cut(s) 60, 1229, 1253
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 2 cut(s) 48, 540
Sau3AI GATC 5 cut(s) 24, 180, 493, 682, 913
Sau96I GGNCC 5 cut(s) 398, 545, 1235, 1337, 1364
ScrFI CCNGG 5 cut(s) 266, 534, 1179, 1206, 1363
SfaNI GCATC 3 cut(s) 56, 510, 1191
SfcI CTRYAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 1235
SmiMI CAYNNNNRTG 3 cut(s) 60, 1229, 1253
SmlI CTYRAG 1 cut(s) 1167
SmoI CTYRAG 1 cut(s) 1167
SphI GCATGC 2 cut(s) 1177, 1252
Sse9I AATT 5 cut(s) 99, 509, 581, 865, 1453
SseBI AGGCCT 1 cut(s) 1480
SspMI CTAG 1 cut(s) 1476
StuI AGGCCT 1 cut(s) 1480
StyD4I CCNGG 5 cut(s) 264, 532, 1177, 1204, 1361
StyI CCWWGG 3 cut(s) 1015, 1354, 1374
TaaI ACNGT 4 cut(s) 59, 151, 956, 1404
TaqI TCGA 3 cut(s) 165, 688, 1580
TasI AATT 5 cut(s) 99, 509, 581, 865, 1453
TatI WGTACW 1 cut(s) 1404
TauI GCSGC 5 cut(s) 345, 882, 1313, 1347, 1507
TfiI GAWTC 2 cut(s) 128, 787
Tru1I TTAA 2 cut(s) 48, 540
Tru9I TTAA 2 cut(s) 48, 540
TscAI CASTG 2 cut(s) 62, 961
TseFI GTSAC 3 cut(s) 145, 1445, 1541
TseI GCWGC 8 cut(s) 436, 445, 457, 460, 742, 1307, 1412, 1584
Tsp45I GTSAC 3 cut(s) 145, 1445, 1541
TspDTI ATGAA 7 cut(s) 494, 722, 773, 782, 800, 1235, 1331
TspRI CASTG 2 cut(s) 62, 961
Van91I CCANNNNNTGG 2 cut(s) 977, 1153
VpaK11BI GGWCC 1 cut(s) 1235
XapI RAATTY 3 cut(s) 581, 865, 1453
XceI RCATGY 6 cut(s) 212, 289, 1133, 1177, 1252, 1504
XcmI CCANNNNNNNNNTGG 4 cut(s) 383, 800, 1022, 1154
XmiI GTMKAC 1 cut(s) 165
XspI CTAG 1 cut(s) 1476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.