AT3G06330

Zinc finger (C3HC4-type RING finger) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005136
Physical Location & Seq
Forward (+)
1917131 .. 1919984
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06330.2

Sequence Viewer

Length: 1281 bp
ATGAAGATGCAAGATTCGGCAGCTCAAGAACCGGAAATTGCTATAATCGTGGGAGATTCTTCTTCTTCTTCTCTTCATTCTTCTTCTCAGGTAACAGAAAAATCTACTGAAGATGTGCCGAGCTGCTCTCACTTGGATCTTTCAATACAAATACCTTCCAGATCACTTCCATTCGGTAACGGCCGTAACCCAAAGGGTTCATTGAAGTCCACTCCTTCATTCAAAAGTGGCACTACATCCTCACCAAGAGGAATCTTGCGGAATTTAAGCTTGAAAAAGAAAGTTATTTCTCAACCCGAAAGCGAGAGAAGCTCCTTACTATCTCCTGGTCTCATGGAAACCGCTAAAAAGCCTAATGCTACTGGTTCCACAACTTCTCCATATTGGAAAAGATGCTTATCGCTTCCTAGTAGACAAGCTGCAAAACTGTCTCCTGTGGTTTCTACACAACTTTCAGCTGGGGTGCCTGGTGACCCGCCTAATAAAGATTATTCAAGGTCCTTGTCCATGCCCGGAAGAAACAAAGTTATTGTGCGATCCATATCTTTTGACAACCACAAAGCCCGTGTTTCCAGTGAAACAAGTGCAGATCAAGTCTCTTCCGTTCCTCCTGAAGAAACTGATGAAGAAATTCCCGAAGAAGAAGCCGTGTGCAGGATCTGTCTGGACGTGTGCGAAGAAGGAAATACTTTGAAAATGGAATGCAGCTGCAAAGGTGATCTCAGACTTGTTCATGAAGCTTGTGCAATGAAATGGTTTAGTACAAAGGGAACAAGAACCTGTGACGTCTGTAGACAAGTAGTACAGAACTTACCAGTTACATTGGTTCGTGTGCCCACACCTAATCAACAAAACAACAGACGTGGTAGCAGTCAACAGAATATGCCGTCACAAACCGTTAGTGCTTGGCAAGAGTTTGTGGTGCTAGTTCTAATCAGCACAGTCTGCTACTTCTTCTTCCTCGAGCAATTACTGATTCGTGACTTGAACAAACAAGCTATTTACATCGCAGCACCATTTTCACTTACGTTAGGCCTCTTAGCATCCATTTTTGCCATTGTTCTCGCTATCAGAGAATACATATGGACATACGCAGCACTCGAGTTTGCGCTTGTGGGCATGTTGGTTCATATATTCTATGCTACAGTTAGACTATCGGCGACCTATTCTATACTCTTTGCAGGGATTCTTGGTTTTGGGATAGCCGTGTGCCTAAACTCGTTGTACCTTCATTATTTCGCTTGGCGTGTACGCGTTGCACAAAATTCAAGTCCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

426

Amino Acids

46.71

Weight (kDa)

8.76

Isoelectric Point (pI)

64.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 49 - 95 1.6e-14 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 789
AccB1I GGYRCC 1 cut(s) 463
AccI GTMKAC 2 cut(s) 412, 793
AccII CGCG 1 cut(s) 1254
AciI CCGC 3 cut(s) 259, 342, 476
AclWI GGATC 3 cut(s) 144, 531, 665
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 3 cut(s) 262, 630, 1264
AcuI CTGAAG 2 cut(s) 129, 633
AcyI GRCGYC 1 cut(s) 786
AfaI GTAC 4 cut(s) 763, 804, 1226, 1251
AfiI CCNNNNNNNGG 1 cut(s) 654
AflIII ACRYGT 2 cut(s) 669, 1252
AgsI TTSAA 8 cut(s) 144, 205, 223, 274, 495, 694, 988, 1269
AjiI CACGTC 2 cut(s) 670, 863
AjnI CCWGG 2 cut(s) 325, 466
AluBI AGCT 9 cut(s) 23, 123, 270, 312, 419, 458, 708, 740, 998
AluI AGCT 9 cut(s) 23, 123, 270, 312, 419, 458, 708, 740, 998
Alw26I GTCTC 3 cut(s) 335, 435, 601
AlwI GGATC 3 cut(s) 144, 531, 665
AlwNI CAGNNNCTG 1 cut(s) 660
Ama87I CYCGRG 2 cut(s) 962, 1100
AoxI GGCC 2 cut(s) 181, 1033
ApeKI GCWGC 7 cut(s) 20, 123, 419, 705, 708, 1010, 1094
ApoI RAATTY 3 cut(s) 262, 630, 1264
ArsI GACNNNNNNTTYG 1 cut(s) 1255
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 1111
AspS9I GGNCC 1 cut(s) 498
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 3 cut(s) 234, 482, 728
AvaI CYCGRG 2 cut(s) 962, 1100
AvaII GGWCC 1 cut(s) 498
BaeGI GKGCMC 1 cut(s) 837
BanI GGYRCC 1 cut(s) 463
BbvI GCAGC 7 cut(s) 32, 110, 406, 695, 717, 1022, 1106
BceAI ACGGC 5 cut(s) 168, 196, 632, 871, 1190
BciT130I CCWGG 2 cut(s) 327, 468
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 3 cut(s) 335, 435, 601
BfaI CTAG 2 cut(s) 408, 926
BfmI CTRYAG 2 cut(s) 790, 1143
BisI GCNGC 7 cut(s) 21, 124, 420, 706, 709, 1011, 1095
BlsI GCNGC 7 cut(s) 22, 125, 421, 707, 710, 1012, 1096
Bme1390I CCNGG 3 cut(s) 327, 468, 513
Bme18I GGWCC 1 cut(s) 498
BmeT110I CYCGRG 2 cut(s) 962, 1100
BmgBI CACGTC 2 cut(s) 670, 863
BmgT120I GGNCC 1 cut(s) 498
BmiI GGNNCC 2 cut(s) 367, 465
BmrFI CCNGG 3 cut(s) 327, 468, 513
BmsI GCATC 2 cut(s) 383, 1052
BplI GAGNNNNNCTC 4 cut(s) 112, 144, 296, 328
BpuEI CTTGAG 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 513
BsaBI GATNNNNATC 2 cut(s) 397, 541
BsaHI GRCGYC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 31
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 1 cut(s) 654
Bse1I ACTGG 3 cut(s) 367, 573, 815
Bse3DI GCAATG 1 cut(s) 753
Bse8I GATNNNNATC 2 cut(s) 397, 541
BseBI CCWGG 2 cut(s) 327, 468
BseGI GGATG 2 cut(s) 236, 1043
BseJI GATNNNNATC 2 cut(s) 397, 541
BseLI CCNNNNNNNGG 1 cut(s) 654
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 2 cut(s) 101, 736
BseNI ACTGG 3 cut(s) 367, 573, 815
BseSI GKGCMC 1 cut(s) 837
BseX3I CGGCCG 1 cut(s) 181
BseXI GCAGC 7 cut(s) 32, 110, 406, 695, 717, 1022, 1106
BseYI CCCAGC 1 cut(s) 458
BsgI GTGCAG 2 cut(s) 606, 673
Bsh1236I CGCG 1 cut(s) 1254
Bsh1285I CGRYCG 1 cut(s) 184
BshFI GGCC 2 cut(s) 183, 1035
BshNI GGYRCC 1 cut(s) 463
BsiEI CGRYCG 1 cut(s) 184
BsiHKCI CYCGRG 2 cut(s) 962, 1100
BsiSI CCGG 2 cut(s) 32, 513
BslI CCNNNNNNNGG 1 cut(s) 654
BsmAI GTCTC 3 cut(s) 335, 435, 601
BsmI GAATGC 1 cut(s) 707
BsnI GGCC 2 cut(s) 183, 1035
Bso31I GGTCTC 1 cut(s) 335
BsoBI CYCGRG 2 cut(s) 962, 1100
Bsp1286I GDGCHC 1 cut(s) 837
Bsp143I GATC 6 cut(s) 136, 161, 536, 589, 657, 718
BspACI CCGC 3 cut(s) 259, 342, 476
BspANI GGCC 2 cut(s) 183, 1035
BspCNI CTCAG 2 cut(s) 100, 735
BspFNI CGCG 1 cut(s) 1254
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 367, 465
BspPI GGATC 3 cut(s) 144, 531, 665
BspT107I GGYRCC 1 cut(s) 463
BspTNI GGTCTC 1 cut(s) 335
BsrDI GCAATG 1 cut(s) 753
BsrI ACTGG 3 cut(s) 367, 573, 815
BssMI GATC 6 cut(s) 136, 161, 536, 589, 657, 718
BssNI GRCGYC 1 cut(s) 786
Bst2UI CCWGG 2 cut(s) 327, 468
Bst4CI ACNGT 4 cut(s) 429, 898, 943, 1147
Bst6I CTCTTC 2 cut(s) 78, 604
BstACI GRCGYC 1 cut(s) 786
BstAPI GCANNNNNTGC 1 cut(s) 945
BstDEI CTNAG 3 cut(s) 87, 722, 1039
BstEII GGTNACC 1 cut(s) 470
BstF5I GGATG 2 cut(s) 236, 1043
BstFNI CGCG 1 cut(s) 1254
BstHHI GCGC 1 cut(s) 1111
BstKTI GATC 6 cut(s) 139, 164, 539, 592, 660, 721
BstMAI GTCTC 3 cut(s) 335, 435, 601
BstMBI GATC 6 cut(s) 136, 161, 536, 589, 657, 718
BstMCI CGRYCG 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 309, 945
BstNI CCWGG 2 cut(s) 327, 468
BstNSI RCATGY 1 cut(s) 1123
BstPI GGTNACC 1 cut(s) 470
BstSCI CCNGG 3 cut(s) 325, 466, 511
BstSFI CTRYAG 2 cut(s) 790, 1143
BstSLI GKGCMC 1 cut(s) 837
BstUI CGCG 1 cut(s) 1254
BstV1I GCAGC 7 cut(s) 32, 110, 406, 695, 717, 1022, 1106
BstX2I RGATCY 2 cut(s) 136, 657
BstYI RGATCY 2 cut(s) 136, 657
BstZI CGGCCG 1 cut(s) 181
BsuRI GGCC 2 cut(s) 183, 1035
BtgZI GCGATG 1 cut(s) 991
BtrI CACGTC 2 cut(s) 670, 863
BtsCI GGATG 2 cut(s) 236, 1043
BtsIMutI CAGTG 1 cut(s) 580
CaiI CAGNNNCTG 1 cut(s) 660
CciI TCATGA 1 cut(s) 733
CfoI GCGC 1 cut(s) 1111
Cfr13I GGNCC 1 cut(s) 498
Csp6I GTAC 4 cut(s) 762, 803, 1225, 1250
CspCI CAANNNNNGTGG 2 cut(s) 844, 879
CviAII CATG 4 cut(s) 334, 508, 734, 1120
CviQI GTAC 4 cut(s) 762, 803, 1225, 1250
DdeI CTNAG 3 cut(s) 87, 722, 1039
DpnI GATC 6 cut(s) 138, 163, 538, 591, 659, 720
DpnII GATC 6 cut(s) 136, 161, 536, 589, 657, 718
EaeI YGGCCR 1 cut(s) 181
EagI CGGCCG 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 78, 604
EarI CTCTTC 2 cut(s) 78, 604
EclXI CGGCCG 1 cut(s) 181
Eco147I AGGCCT 1 cut(s) 1035
Eco31I GGTCTC 1 cut(s) 335
Eco47I GGWCC 1 cut(s) 498
Eco52I CGGCCG 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 129, 633
Eco88I CYCGRG 2 cut(s) 962, 1100
Eco91I GGTNACC 1 cut(s) 470
EcoO109I RGGNCCY 1 cut(s) 498
EcoO65I GGTNACC 1 cut(s) 470
EcoRII CCWGG 2 cut(s) 325, 466
FaeI CATG 4 cut(s) 337, 511, 737, 1123
FatI CATG 4 cut(s) 333, 507, 733, 1119
FauI CCCGC 1 cut(s) 483
FauNDI CATATG 1 cut(s) 1082
FblI GTMKAC 2 cut(s) 412, 793
Fnu4HI GCNGC 7 cut(s) 21, 124, 420, 706, 709, 1011, 1095
FokI GGATG 2 cut(s) 223, 1030
Fsp4HI GCNGC 7 cut(s) 21, 124, 420, 706, 709, 1011, 1095
FspBI CTAG 2 cut(s) 408, 926
GlaI GCGC 1 cut(s) 1110
GluI GCNGC 7 cut(s) 21, 124, 420, 706, 709, 1011, 1095
GsaI CCCAGC 1 cut(s) 462
HaeIII GGCC 2 cut(s) 183, 1035
HapII CCGG 2 cut(s) 32, 513
HhaI GCGC 1 cut(s) 1111
Hin1I GRCGYC 1 cut(s) 786
Hin1II CATG 4 cut(s) 337, 511, 737, 1123
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HincII GTYRAC 1 cut(s) 875
HindII GTYRAC 1 cut(s) 875
HindIII AAGCTT 2 cut(s) 268, 738
HinfI GANTC 5 cut(s) 14, 56, 252, 976, 1186
HpaII CCGG 2 cut(s) 32, 513
HphI GGTGA 3 cut(s) 234, 482, 728
Hpy166II GTNNAC 5 cut(s) 210, 413, 794, 875, 1250
Hpy188I TCNGA 2 cut(s) 725, 1073
Hpy188III TCNNGA 7 cut(s) 26, 159, 611, 635, 665, 734, 980
Hpy8I GTNNAC 5 cut(s) 210, 413, 794, 875, 1250
HpyAV CCTTC 4 cut(s) 165, 225, 674, 1238
HpyCH4III ACNGT 4 cut(s) 429, 898, 943, 1147
HpyCH4IV ACGT 4 cut(s) 669, 786, 862, 1028
HpyCH4V TGCA 9 cut(s) 10, 422, 587, 654, 705, 711, 746, 1181, 1259
HpyF10VI GCNNNNNNNGC 2 cut(s) 309, 945
HpyF3I CTNAG 3 cut(s) 87, 722, 1039
HpySE526I ACGT 4 cut(s) 669, 786, 862, 1028
Hsp92I GRCGYC 1 cut(s) 786
Hsp92II CATG 4 cut(s) 337, 511, 737, 1123
HspAI GCGC 1 cut(s) 1109
Kzo9I GATC 6 cut(s) 136, 161, 536, 589, 657, 718
LmnI GCTCC 1 cut(s) 317
Lsp1109I GCAGC 7 cut(s) 32, 110, 406, 695, 717, 1022, 1106
LweI GCATC 2 cut(s) 383, 1052
MaeI CTAG 2 cut(s) 408, 926
MaeII ACGT 4 cut(s) 669, 786, 862, 1028
MaeIII GTNAC 8 cut(s) 91, 176, 185, 470, 782, 817, 888, 980
MalI GATC 6 cut(s) 138, 163, 538, 591, 659, 720
MboI GATC 6 cut(s) 136, 161, 536, 589, 657, 718
MflI RGATCY 2 cut(s) 136, 657
MhlI GDGCHC 1 cut(s) 837
MluCI AATT 5 cut(s) 36, 262, 630, 968, 1264
MluI ACGCGT 1 cut(s) 1252
MnlI CCTC 5 cut(s) 242, 250, 618, 971, 1046
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 458, 708
MspI CCGG 2 cut(s) 32, 513
MspR9I CCNGG 3 cut(s) 327, 468, 513
Mva1269I GAATGC 1 cut(s) 707
MvaI CCWGG 2 cut(s) 327, 468
MvnI CGCG 1 cut(s) 1254
MwoI GCNNNNNNNGC 2 cut(s) 309, 945
NciI CCSGG 1 cut(s) 513
NdeI CATATG 1 cut(s) 1082
NdeII GATC 6 cut(s) 136, 161, 536, 589, 657, 718
NlaIII CATG 4 cut(s) 337, 511, 737, 1123
NlaIV GGNNCC 2 cut(s) 367, 465
NmeAIII GCCGAG 1 cut(s) 144
NmuCI GTSAC 4 cut(s) 470, 782, 888, 980
NspI RCATGY 1 cut(s) 1123
PaeR7I CTCGAG 2 cut(s) 962, 1100
PagI TCATGA 1 cut(s) 733
PceI AGGCCT 1 cut(s) 1035
PcsI WCGNNNNNNNCGW 1 cut(s) 1098
PctI GAATGC 1 cut(s) 707
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 5 cut(s) 14, 56, 252, 976, 1186
PkrI GCNGC 7 cut(s) 22, 125, 421, 707, 710, 1012, 1096
PpuMI RGGWCCY 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 325, 466
PspEI GGTNACC 1 cut(s) 470
PspFI CCCAGC 1 cut(s) 458
PspGI CCWGG 2 cut(s) 325, 466
PspN4I GGNNCC 2 cut(s) 367, 465
PspPI GGNCC 1 cut(s) 498
PspPPI RGGWCCY 1 cut(s) 498
PspXI VCTCGAGB 2 cut(s) 962, 1100
PstNI CAGNNNCTG 1 cut(s) 660
PsuI RGATCY 2 cut(s) 136, 657
PvuII CAGCTG 2 cut(s) 458, 708
RsaI GTAC 4 cut(s) 763, 804, 1226, 1251
RsaNI GTAC 4 cut(s) 762, 803, 1225, 1250
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 7 cut(s) 21, 124, 420, 706, 709, 1011, 1095
Sau3AI GATC 6 cut(s) 136, 161, 536, 589, 657, 718
Sau96I GGNCC 1 cut(s) 498
ScrFI CCNGG 3 cut(s) 327, 468, 513
SduI GDGCHC 1 cut(s) 837
SfaNI GCATC 2 cut(s) 383, 1052
SfcI CTRYAG 2 cut(s) 790, 1143
Sfr274I CTCGAG 2 cut(s) 962, 1100
SinI GGWCC 1 cut(s) 498
SlaI CTCGAG 2 cut(s) 962, 1100
SmlI CTYRAG 3 cut(s) 24, 962, 1100
SmoI CTYRAG 3 cut(s) 24, 962, 1100
Sse9I AATT 5 cut(s) 36, 262, 630, 968, 1264
SseBI AGGCCT 1 cut(s) 1035
SsiI CCGC 3 cut(s) 259, 342, 476
SspMI CTAG 2 cut(s) 408, 926
StuI AGGCCT 1 cut(s) 1035
StyD4I CCNGG 3 cut(s) 325, 466, 511
TaaI ACNGT 4 cut(s) 429, 898, 943, 1147
TaiI ACGT 4 cut(s) 672, 789, 865, 1031
TaqI TCGA 2 cut(s) 963, 1101
TasI AATT 5 cut(s) 36, 262, 630, 968, 1264
TatI WGTACW 2 cut(s) 761, 802
TfiI GAWTC 5 cut(s) 14, 56, 252, 976, 1186
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 4 cut(s) 470, 782, 888, 980
TseI GCWGC 7 cut(s) 20, 123, 419, 705, 708, 1010, 1094
Tsp45I GTSAC 4 cut(s) 470, 782, 888, 980
TspGWI ACGGA 1 cut(s) 592
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 3 cut(s) 262, 630, 1264
XceI RCATGY 1 cut(s) 1123
XhoI CTCGAG 2 cut(s) 962, 1100
XmiI GTMKAC 2 cut(s) 412, 793
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 2 cut(s) 408, 926
ZraI GACGTC 1 cut(s) 787
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.