Rw4G019640

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0005136
Physical Location & Seq
Forward (+)
43087211 .. 43091245
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G019640.1

Sequence Viewer

Length: 1116 bp
ATGCAAGCAAGTGAAGCAGTGAGTAATGGGGTTACAGAAGCTCCTCCTGCTCAGGCTGGTGCTCAAAATCTCAAGTCCATACAGGAAGAACCTACAGAACCAGGGCATAGTGGAAGACGCCCCGATATATCACTTCAAATACCCCCAAGACATGCGGCGTTTGGCAATAGCCGGAGCGGCAAGGGTTTACTCCAGTCTCAAGGTTCCTCTAAGGGTAGTCCACTTTCAGCAGGGTTATTCCGGGCTTTAAGCTTCAAGAAGAAAGGTCTACTGCCGGATGGTGAGAAAAGTTCCCTCCTTAATTCAGACTCCAGTACAGCTCCGGGAACTCCAGTAGTGGCCAATAATGCACCAGCATTTTCTTGGACAAAGTGTGCCTCTCTTCCTGTTACACCAGCATCGAATTTGTCACCATCCATTTCTACACCAGTTTCTGCAAGGATGTATAATGAACGGCACAAGCCACATAAAGAAACTGTTAAGGCTACAGTTTCAAGGTCCCTGTCTGTGCCTGGACGAAATATAGTTATTGTTAGATCCGTATCTTTTGCTGCTCGAAATGAGAACATCCAGACAGATCCTAGTGATGATCAAATAACTCCGGTTCCAGTTGAGCCTGATGATGAAGAAATTCCTGAAGAAGAAGCAGTATGCAGGATTTGTCTTGATGAATGTGAAGAACAAAATACACTCAAAATGGAATGTAGTTGCAAAGGTGCTCTCAGACTTGTACATGAACATTGTGCAATTAAGTGGTTTAGCACAAGAGGAAACAGGACATGCGAGGTATGTGGGCAGGAGGTTCAGAATTTACCTGTAACCTTGCTTCGGGTGCAGAGCTCTGTTCAAAGGGCCAGCAGACAGAACCAGAACCAACAGAGTTTGAATCCAGAAACGCTAAGTGCATGGCAGGACTTCGTGATACTGGTATTAATTAGCACAATATGCTACTTCTTCTTCCTTGAGCAACTACTGATTCGTGACTTGAAAACTCAAGCGATTGTAGTTGCAGCACCATTTGCATTTACATTGGGTCTCTTGGCATCCATATTTGCCATTGTCCTTGGTATAATTGAGCCTCAGAAATTATTAATGCTCTACCCTGTAAGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

371

Amino Acids

40.25

Weight (kDa)

6.61

Isoelectric Point (pI)

58.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 218 - 264 9.9e-14 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1114
AccBSI CCGCTC 1 cut(s) 177
AccI GTMKAC 1 cut(s) 268
AciI CCGC 2 cut(s) 155, 177
AclWI GGATC 2 cut(s) 531, 572
AcoI YGGCCR 1 cut(s) 339
AcsI RAATTY 3 cut(s) 403, 630, 808
AcuI CTGAAG 1 cut(s) 657
AcyI GRCGYC 1 cut(s) 118
AfaI GTAC 2 cut(s) 316, 732
AfiI CCNNNNNNNGG 1 cut(s) 828
AgsI TTSAA 6 cut(s) 137, 256, 495, 848, 886, 988
AjnI CCWGG 2 cut(s) 100, 511
AluBI AGCT 4 cut(s) 41, 252, 320, 840
AluI AGCT 4 cut(s) 41, 252, 320, 840
Alw21I GWGCWC 3 cut(s) 64, 721, 842
Alw26I GTCTC 2 cut(s) 201, 1040
AlwI GGATC 2 cut(s) 531, 572
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 2 cut(s) 339, 852
ApeKI GCWGC 2 cut(s) 551, 1010
ApoI RAATTY 3 cut(s) 403, 630, 808
AseI ATTAAT 2 cut(s) 932, 1091
Asp700I GAANNNNTTC 1 cut(s) 630
AspS9I GGNCC 2 cut(s) 498, 852
AsuC2I CCSGG 2 cut(s) 242, 324
AsuHPI GGTGA 2 cut(s) 293, 402
AvaII GGWCC 1 cut(s) 498
BalI TGGCCA 1 cut(s) 341
BanII GRGCYC 1 cut(s) 842
BarI GAAGNNNNNNTAC 2 cut(s) 810, 842
BbsI GAAGAC 1 cut(s) 121
Bbv12I GWGCWC 3 cut(s) 64, 721, 842
BbvI GCAGC 2 cut(s) 538, 1022
BccI CCATC 2 cut(s) 272, 421
BceAI ACGGC 1 cut(s) 470
BciT130I CCWGG 2 cut(s) 102, 513
BclI TGATCA 1 cut(s) 589
BcnI CCSGG 2 cut(s) 242, 324
BcoDI GTCTC 2 cut(s) 201, 1040
BfaI CTAG 1 cut(s) 582
BfmI CTRYAG 2 cut(s) 93, 486
BglI GCCNNNNNGGC 1 cut(s) 177
BisI GCNGC 4 cut(s) 156, 178, 552, 1011
BlsI GCNGC 4 cut(s) 157, 179, 553, 1012
Bme1390I CCNGG 4 cut(s) 102, 242, 324, 513
Bme18I GGWCC 1 cut(s) 498
BmgT120I GGNCC 2 cut(s) 498, 852
BmiI GGNNCC 3 cut(s) 205, 500, 606
BmrFI CCNGG 4 cut(s) 102, 242, 324, 513
BmsI GCATC 2 cut(s) 407, 1052
BpiI GAAGAC 1 cut(s) 121
BpmI CTGGAG 3 cut(s) 176, 295, 315
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 4 cut(s) 56, 183, 978, 983
BpuMI CCSGG 2 cut(s) 242, 324
BsaBI GATNNNNATC 1 cut(s) 541
BsaHI GRCGYC 1 cut(s) 118
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 2 cut(s) 101, 1063
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 1 cut(s) 828
Bse1I ACTGG 6 cut(s) 193, 312, 332, 428, 608, 930
Bse8I GATNNNNATC 1 cut(s) 541
BseBI CCWGG 2 cut(s) 102, 513
BseDI CCNNGG 2 cut(s) 101, 1063
BseGI GGATG 5 cut(s) 283, 413, 447, 567, 1043
BseJI GATNNNNATC 1 cut(s) 541
BseLI CCNNNNNNNGG 1 cut(s) 828
BseMII CTCAG 3 cut(s) 65, 736, 1094
BseNI ACTGG 6 cut(s) 193, 312, 332, 428, 608, 930
BseRI GAGGAG 1 cut(s) 33
BseXI GCAGC 2 cut(s) 538, 1022
BsgI GTGCAG 1 cut(s) 854
BshFI GGCC 2 cut(s) 341, 854
BsiHKAI GWGCWC 3 cut(s) 64, 721, 842
BsiSI CCGG 5 cut(s) 172, 241, 275, 323, 602
BslFI GGGAC 1 cut(s) 484
BslI CCNNNNNNNGG 1 cut(s) 828
BsmAI GTCTC 2 cut(s) 201, 1040
BsmFI GGGAC 1 cut(s) 484
BsnI GGCC 2 cut(s) 341, 854
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 3 cut(s) 64, 721, 842
Bsp1407I TGTACA 1 cut(s) 730
Bsp143I GATC 3 cut(s) 536, 577, 589
BspACI CCGC 2 cut(s) 155, 177
BspANI GGCC 2 cut(s) 341, 854
BspCNI CTCAG 3 cut(s) 64, 735, 1093
BspLI GGNNCC 3 cut(s) 205, 500, 606
BspPI GGATC 2 cut(s) 531, 572
BspTNI GGTCTC 1 cut(s) 1040
BsrBI CCGCTC 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 730
BsrI ACTGG 6 cut(s) 193, 312, 332, 428, 608, 930
BssECI CCNNGG 2 cut(s) 101, 1063
BssMI GATC 3 cut(s) 536, 577, 589
BssNI GRCGYC 1 cut(s) 118
BssT1I CCWWGG 1 cut(s) 1063
Bst2UI CCWGG 2 cut(s) 102, 513
Bst4CI ACNGT 2 cut(s) 478, 490
Bst6I CTCTTC 1 cut(s) 387
BstACI GRCGYC 1 cut(s) 118
BstAPI GCANNNNNTGC 2 cut(s) 945, 1019
BstAUI TGTACA 1 cut(s) 730
BstC8I GCNNGC 2 cut(s) 6, 856
BstDEI CTNAG 5 cut(s) 51, 210, 722, 899, 1080
BstF5I GGATG 5 cut(s) 283, 413, 447, 567, 1043
BstKTI GATC 3 cut(s) 539, 580, 592
BstMAI GTCTC 2 cut(s) 201, 1040
BstMBI GATC 3 cut(s) 536, 577, 589
BstMWI GCNNNNNNNGC 7 cut(s) 14, 47, 177, 347, 832, 945, 1019
BstNI CCWGG 2 cut(s) 102, 513
BstNSI RCATGY 2 cut(s) 155, 783
BstSCI CCNGG 4 cut(s) 100, 240, 322, 511
BstSFI CTRYAG 2 cut(s) 93, 486
BstV1I GCAGC 2 cut(s) 538, 1022
BstV2I GAAGAC 1 cut(s) 121
BstX2I RGATCY 2 cut(s) 536, 577
BstYI RGATCY 2 cut(s) 536, 577
BsuRI GGCC 2 cut(s) 341, 854
BtsCI GGATG 5 cut(s) 283, 413, 447, 567, 1043
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 6, 856
CaiI CAGNNNCTG 1 cut(s) 434
Cfr13I GGNCC 2 cut(s) 498, 852
CseI GACGC 1 cut(s) 126
Csp6I GTAC 2 cut(s) 315, 731
CviAII CATG 4 cut(s) 152, 734, 780, 906
CviQI GTAC 2 cut(s) 315, 731
DdeI CTNAG 5 cut(s) 51, 210, 722, 899, 1080
DpnI GATC 3 cut(s) 538, 579, 591
DpnII GATC 3 cut(s) 536, 577, 589
EaeI YGGCCR 1 cut(s) 339
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Ecl136II GAGCTC 1 cut(s) 840
Eco130I CCWWGG 1 cut(s) 1063
Eco24I GRGCYC 1 cut(s) 842
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 657
EcoICRI GAGCTC 1 cut(s) 840
EcoO109I RGGNCCY 1 cut(s) 498
EcoRII CCWGG 2 cut(s) 100, 511
EcoT14I CCWWGG 1 cut(s) 1063
EcoT38I GRGCYC 1 cut(s) 842
ErhI CCWWGG 1 cut(s) 1063
FaeI CATG 4 cut(s) 155, 737, 783, 909
FaqI GGGAC 1 cut(s) 484
FatI CATG 4 cut(s) 151, 733, 779, 905
FbaI TGATCA 1 cut(s) 589
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 4 cut(s) 156, 178, 552, 1011
FokI GGATG 5 cut(s) 290, 400, 454, 554, 1030
FriOI GRGCYC 1 cut(s) 842
Fsp4HI GCNGC 4 cut(s) 156, 178, 552, 1011
FspBI CTAG 1 cut(s) 582
GluI GCNGC 4 cut(s) 156, 178, 552, 1011
GsuI CTGGAG 3 cut(s) 176, 295, 315
HaeIII GGCC 2 cut(s) 341, 854
HapII CCGG 5 cut(s) 172, 241, 275, 323, 602
HgaI GACGC 1 cut(s) 126
Hin1I GRCGYC 1 cut(s) 118
Hin1II CATG 4 cut(s) 155, 737, 783, 909
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 3 cut(s) 308, 886, 976
HpaII CCGG 5 cut(s) 172, 241, 275, 323, 602
HphI GGTGA 2 cut(s) 293, 402
Hpy166II GTNNAC 3 cut(s) 188, 221, 269
Hpy188I TCNGA 4 cut(s) 307, 725, 807, 1083
Hpy188III TCNNGA 7 cut(s) 256, 571, 635, 665, 890, 919, 980
Hpy8I GTNNAC 3 cut(s) 188, 221, 269
HpyCH4III ACNGT 2 cut(s) 478, 490
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 47, 177, 347, 832, 945, 1019
HpyF3I CTNAG 5 cut(s) 51, 210, 722, 899, 1080
Hsp92I GRCGYC 1 cut(s) 118
Hsp92II CATG 4 cut(s) 155, 737, 783, 909
Ksp22I TGATCA 1 cut(s) 589
Kzo9I GATC 3 cut(s) 536, 577, 589
LmnI GCTCC 3 cut(s) 46, 174, 325
Lsp1109I GCAGC 2 cut(s) 538, 1022
LweI GCATC 2 cut(s) 407, 1052
MaeI CTAG 1 cut(s) 582
MaeIII GTNAC 5 cut(s) 31, 388, 408, 817, 980
MalI GATC 3 cut(s) 538, 579, 591
MbiI CCGCTC 1 cut(s) 177
MboI GATC 3 cut(s) 536, 577, 589
MflI RGATCY 2 cut(s) 536, 577
MhlI GDGCHC 3 cut(s) 64, 721, 842
MlsI TGGCCA 1 cut(s) 341
MluCI AATT 8 cut(s) 301, 403, 630, 747, 808, 933, 1071, 1085
MluNI TGGCCA 1 cut(s) 341
MlyI GAGTC 1 cut(s) 302
MnlI CCTC 8 cut(s) 54, 217, 305, 388, 761, 778, 793, 1089
Mox20I TGGCCA 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 630
MscI TGGCCA 1 cut(s) 341
MseI TTAA 6 cut(s) 248, 300, 480, 750, 932, 1091
Msp20I TGGCCA 1 cut(s) 341
MspI CCGG 5 cut(s) 172, 241, 275, 323, 602
MspR9I CCNGG 4 cut(s) 102, 242, 324, 513
MvaI CCWGG 2 cut(s) 102, 513
MwoI GCNNNNNNNGC 7 cut(s) 14, 47, 177, 347, 832, 945, 1019
NciI CCSGG 2 cut(s) 242, 324
NdeII GATC 3 cut(s) 536, 577, 589
NlaIII CATG 4 cut(s) 155, 737, 783, 909
NlaIV GGNNCC 3 cut(s) 205, 500, 606
NmuCI GTSAC 2 cut(s) 408, 980
NspI RCATGY 2 cut(s) 155, 783
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 2 cut(s) 886, 976
PfoI TCCNGGA 1 cut(s) 322
PkrI GCNGC 4 cut(s) 157, 179, 553, 1012
PleI GAGTC 1 cut(s) 302
PpsI GAGTC 1 cut(s) 302
PpuMI RGGWCCY 1 cut(s) 498
PshBI ATTAAT 2 cut(s) 932, 1091
PsiI TTATAA 1 cut(s) 1114
Psp124BI GAGCTC 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 100, 511
PspGI CCWGG 2 cut(s) 100, 511
PspN4I GGNNCC 3 cut(s) 205, 500, 606
PspPI GGNCC 2 cut(s) 498, 852
PspPPI RGGWCCY 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 536, 577
RsaI GTAC 2 cut(s) 316, 732
RsaNI GTAC 2 cut(s) 315, 731
SacI GAGCTC 1 cut(s) 842
SaqAI TTAA 6 cut(s) 248, 300, 480, 750, 932, 1091
SatI GCNGC 4 cut(s) 156, 178, 552, 1011
Sau3AI GATC 3 cut(s) 536, 577, 589
Sau96I GGNCC 2 cut(s) 498, 852
SchI GAGTC 1 cut(s) 302
ScrFI CCNGG 4 cut(s) 102, 242, 324, 513
SduI GDGCHC 3 cut(s) 64, 721, 842
SfaNI GCATC 2 cut(s) 407, 1052
SfcI CTRYAG 2 cut(s) 93, 486
SinI GGWCC 1 cut(s) 498
SmlI CTYRAG 4 cut(s) 71, 198, 962, 993
SmoI CTYRAG 4 cut(s) 71, 198, 962, 993
Sse9I AATT 8 cut(s) 301, 403, 630, 747, 808, 933, 1071, 1085
SsiI CCGC 2 cut(s) 155, 177
SspMI CTAG 1 cut(s) 582
SstI GAGCTC 1 cut(s) 842
StyD4I CCNGG 4 cut(s) 100, 240, 322, 511
StyI CCWWGG 1 cut(s) 1063
TaaI ACNGT 2 cut(s) 478, 490
TaqI TCGA 2 cut(s) 401, 556
TasI AATT 8 cut(s) 301, 403, 630, 747, 808, 933, 1071, 1085
TatI WGTACW 2 cut(s) 314, 730
TauI GCSGC 2 cut(s) 158, 180
TfiI GAWTC 2 cut(s) 886, 976
Tru1I TTAA 6 cut(s) 248, 300, 480, 750, 932, 1091
Tru9I TTAA 6 cut(s) 248, 300, 480, 750, 932, 1091
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 2 cut(s) 408, 980
TseI GCWGC 2 cut(s) 551, 1010
Tsp45I GTSAC 2 cut(s) 408, 980
TspDTI ATGAA 4 cut(s) 465, 639, 684, 750
TspGWI ACGGA 1 cut(s) 529
TspRI CASTG 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 498
VspI ATTAAT 2 cut(s) 932, 1091
XapI RAATTY 3 cut(s) 403, 630, 808
XceI RCATGY 2 cut(s) 155, 783
XcmI CCANNNNNNNNNTGG 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.