Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026061.1

Orthogroup ID

OG0005136

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3180

Gene Structure 3180 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

gctggtgctcaaaatctcaagtccatacaggaagaacctacagaaccagggcatagtggaagacgccccgatatatcacttcaaatacccccaagacatgcggcgtttggcaatagccggagcggcaggggtttactccagtctcaaggttcctctaagggtagtccactttcaggagggttattccgggctttaagcttcaagaagaaaggtatactgccggatggtgagaaaagttccctccttaattcagactccagtacagctccgggaagtccagtagtggccaataatgcaccagcattttcttggacaaagtgtgcctctcttcctgttacaccagcatcgaatttgtcaccatccatttctacaccagtttctgcaaggatgtataatgaacggcacaagccacataaagaaactgttaaggctacagtttcaaggtccctgtctgtgcctggacgaaatatagttattgttagatccgtatcttttgctgctcgaaatgagaacatccagacagatcctagtgatgatcaaataactccggttccagttgagcctgatgatgaagaaattcctgaagaagaagcagtatgcaggatttgtcttgatgaatgtgaagaacaaaatacactcaaaatggaatgtagttgcaaaggtgctctcagacttgtacatgaacattgtgcaattaagtggtttagcacaagaggaaacaggacatgcgaggtatgtgggcaggaggttcagaatttacctgtaaccttgcttcgggtgcagagctctgttcaaagggccagcagacagaaccagaaccaacagagtttgaatccagaaacgctaagtgcatggcaggacttcgtgatactggtattaattagcacaatatgctacttcttcttccttgagcaactactgattcgtgacttgaaaactcaagcgattgtagttgcagcaccatttgcatttacattgggtctcttggcatccatatttgccattgtccttgcaatcaaggagtatatatggacatatgcggctctcgagtttggacttgtagcgctcaccgtacaccttttctattctacacttcatatgccggctgtttattcaatattgcttgcatcagtagtgggttttgggatatcaatgagcctcaacaccttgtatgtgcaatacttcacttggagagttcaagtttctcaaaacaactctagccctgcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINGv

Protein Analysis

409

Amino Acids

44.76

Weight (kDa)

7.7

Isoelectric Point (pI)

56.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005136)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06330 AT3G06330 AT3G06330 AT3G06330
fragaria_vesca	FvH4_4g17000 FvH4_4g17000 FvH4_4g17000 FvH4_4g17000 FvH4_4g17000
malus_domestica	MD08G1119900.v1.1 MD13G1175100.v1.1 MD16G1176800.v1.1
prunus_persica	Prupe.1G143600_v2.0.a1 Prupe.1G143600_v2.0.a1 Prupe.1G143600_v2.0.a1 Prupe.1G143600_v2.0.a1
pyrus_communis	pycom13g15100 pycom16g14830
rosa_chinensis	RchiOBHm_Chr4g0420671
rosa_laevigata	RLG00000007742
rosa_multiflora	Rmu_sc0011080.1_g000013 Rmu_sc0026061.1_g000001
rosa_roxburghii	Rroxscaffold_5G00363210
rosa_rugosa	Rorug04G0165400 Rorug04G0165500
rosa_samantha	Rh4AG227000 Rh4BG229700 Rh4CG241900 Rh4DG225200
rosa_wichuraiana	Rw4G019640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	123
AccI	GTMKAC	1 cut(s)	214
AciI	CCGC	3 cut(s)	101, 123, 1040
AclWI	GGATC	2 cut(s)	477, 518
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	3 cut(s)	349, 576, 754
AcuI	CTGAAG	1 cut(s)	603
AcyI	GRCGYC	1 cut(s)	64
AfaI	GTAC	3 cut(s)	262, 678, 1074
AfeI	AGCGCT	1 cut(s)	1065
AfiI	CCNNNNNNNGG	2 cut(s)	173, 774
AgsI	TTSAA	8 cut(s)	83, 202, 441, 794, 832, 934, 1116, 1199
AjnI	CCWGG	2 cut(s)	46, 457
AluBI	AGCT	3 cut(s)	198, 266, 786
AluI	AGCT	3 cut(s)	198, 266, 786
Alw21I	GWGCWC	3 cut(s)	10, 667, 788
Alw26I	GTCTC	2 cut(s)	147, 986
AlwI	GGATC	2 cut(s)	477, 518
AlwNI	CAGNNNCTG	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	1046
Aor51HI	AGCGCT	1 cut(s)	1065
AoxI	GGCC	2 cut(s)	285, 798
ApeKI	GCWGC	2 cut(s)	497, 956
ApoI	RAATTY	3 cut(s)	349, 576, 754
AseI	ATTAAT	1 cut(s)	878
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	1 cut(s)	1066
AspS9I	GGNCC	2 cut(s)	444, 798
AsuC2I	CCSGG	2 cut(s)	188, 270
AsuHPI	GGTGA	3 cut(s)	239, 348, 1060
AvaI	CYCGRG	1 cut(s)	1046
AvaII	GGWCC	1 cut(s)	444
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	788
BarI	GAAGNNNNNNTAC	2 cut(s)	756, 788
BbsI	GAAGAC	1 cut(s)	67
Bbv12I	GWGCWC	3 cut(s)	10, 667, 788
BbvI	GCAGC	2 cut(s)	484, 968
BccI	CCATC	2 cut(s)	218, 367
BceAI	ACGGC	1 cut(s)	416
BciT130I	CCWGG	2 cut(s)	48, 459
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	188, 270
BcoDI	GTCTC	2 cut(s)	147, 986
BfaI	CTAG	2 cut(s)	528, 1218
BfmI	CTRYAG	2 cut(s)	39, 432
BfoI	RGCGCY	1 cut(s)	1067
BglI	GCCNNNNNGGC	1 cut(s)	123
BisI	GCNGC	5 cut(s)	102, 124, 498, 957, 1041
BlsI	GCNGC	5 cut(s)	103, 125, 499, 958, 1042
Bme1390I	CCNGG	4 cut(s)	48, 188, 270, 459
Bme18I	GGWCC	1 cut(s)	444
BmeT110I	CYCGRG	1 cut(s)	1046
BmgT120I	GGNCC	2 cut(s)	444, 798
BmiI	GGNNCC	3 cut(s)	151, 446, 552
BmrFI	CCNGG	4 cut(s)	48, 188, 270, 459
BmsI	GCATC	3 cut(s)	353, 998, 1136
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	2 cut(s)	122, 241
BpuEI	CTTGAG	3 cut(s)	129, 924, 929
BpuMI	CCSGG	2 cut(s)	188, 270
BsaBI	GATNNNNATC	1 cut(s)	487
BsaHI	GRCGYC	1 cut(s)	64
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 774
Bse118I	RCCGGY	1 cut(s)	1102
Bse1I	ACTGG	6 cut(s)	139, 258, 278, 374, 554, 876
Bse8I	GATNNNNATC	1 cut(s)	487
BseBI	CCWGG	2 cut(s)	48, 459
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	5 cut(s)	229, 359, 393, 513, 989
BseJI	GATNNNNATC	1 cut(s)	487
BseLI	CCNNNNNNNGG	2 cut(s)	173, 774
BseMII	CTCAG	1 cut(s)	682
BseNI	ACTGG	6 cut(s)	139, 258, 278, 374, 554, 876
BseXI	GCAGC	2 cut(s)	484, 968
BsgI	GTGCAG	1 cut(s)	800
BshFI	GGCC	2 cut(s)	287, 800
BsiHKAI	GWGCWC	3 cut(s)	10, 667, 788
BsiHKCI	CYCGRG	1 cut(s)	1046
BsiSI	CCGG	6 cut(s)	118, 187, 221, 269, 548, 1103
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	173, 774
BsmAI	GTCTC	2 cut(s)	147, 986
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	287, 800
Bso31I	GGTCTC	1 cut(s)	986
BsoBI	CYCGRG	1 cut(s)	1046
Bsp1286I	GDGCHC	3 cut(s)	10, 667, 788
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	3 cut(s)	482, 523, 535
BspACI	CCGC	3 cut(s)	101, 123, 1040
BspANI	GGCC	2 cut(s)	287, 800
BspCNI	CTCAG	1 cut(s)	681
BspLI	GGNNCC	3 cut(s)	151, 446, 552
BspPI	GGATC	2 cut(s)	477, 518
BspTNI	GGTCTC	1 cut(s)	986
BsrBI	CCGCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	1102
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	6 cut(s)	139, 258, 278, 374, 554, 876
BssAI	RCCGGY	1 cut(s)	1102
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	3 cut(s)	482, 523, 535
BssNAI	GTATAC	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	48, 459
Bst4CI	ACNGT	3 cut(s)	424, 436, 1072
Bst6I	CTCTTC	1 cut(s)	333
BstACI	GRCGYC	1 cut(s)	64
BstAPI	GCANNNNNTGC	2 cut(s)	891, 965
BstAUI	TGTACA	1 cut(s)	676
BstC8I	GCNNGC	3 cut(s)	802, 1104, 1125
BstDEI	CTNAG	3 cut(s)	156, 668, 845
BstF5I	GGATG	5 cut(s)	229, 359, 393, 513, 989
BstH2I	RGCGCY	1 cut(s)	1067
BstHHI	GCGC	1 cut(s)	1066
BstKTI	GATC	3 cut(s)	485, 526, 538
BstMAI	GTCTC	2 cut(s)	147, 986
BstMBI	GATC	3 cut(s)	482, 523, 535
BstMWI	GCNNNNNNNGC	5 cut(s)	123, 293, 778, 891, 965
BstNI	CCWGG	2 cut(s)	48, 459
BstNSI	RCATGY	2 cut(s)	101, 729
BstSCI	CCNGG	4 cut(s)	46, 186, 268, 457
BstSFI	CTRYAG	2 cut(s)	39, 432
BstV1I	GCAGC	2 cut(s)	484, 968
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	2 cut(s)	482, 523
BstYI	RGATCY	2 cut(s)	482, 523
BstZ17I	GTATAC	1 cut(s)	215
BsuRI	GGCC	2 cut(s)	287, 800
BtsCI	GGATG	5 cut(s)	229, 359, 393, 513, 989
Cac8I	GCNNGC	3 cut(s)	802, 1104, 1125
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	1066
Cfr10I	RCCGGY	1 cut(s)	1102
Cfr13I	GGNCC	2 cut(s)	444, 798
CseI	GACGC	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	261, 677, 1073
CviAII	CATG	5 cut(s)	98, 680, 726, 852, 1227
CviQI	GTAC	3 cut(s)	261, 677, 1073
DdeI	CTNAG	3 cut(s)	156, 668, 845
DpnI	GATC	3 cut(s)	484, 525, 537
DpnII	GATC	3 cut(s)	482, 523, 535
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Ecl136II	GAGCTC	1 cut(s)	786
Eco24I	GRGCYC	1 cut(s)	788
Eco31I	GGTCTC	1 cut(s)	986
Eco32I	GATATC	1 cut(s)	1149
Eco47I	GGWCC	1 cut(s)	444
Eco47III	AGCGCT	1 cut(s)	1065
Eco53kI	GAGCTC	1 cut(s)	786
Eco57I	CTGAAG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	1046
EcoICRI	GAGCTC	1 cut(s)	786
EcoO109I	RGGNCCY	1 cut(s)	444
EcoRII	CCWGG	2 cut(s)	46, 457
EcoRV	GATATC	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	788
FaeI	CATG	5 cut(s)	101, 683, 729, 855, 1230
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	5 cut(s)	97, 679, 725, 851, 1226
FauNDI	CATATG	2 cut(s)	1036, 1098
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	214
Fnu4HI	GCNGC	5 cut(s)	102, 124, 498, 957, 1041
FokI	GGATG	5 cut(s)	236, 346, 400, 500, 976
FriOI	GRGCYC	1 cut(s)	788
Fsp4HI	GCNGC	5 cut(s)	102, 124, 498, 957, 1041
FspBI	CTAG	2 cut(s)	528, 1218
GlaI	GCGC	1 cut(s)	1065
GluI	GCNGC	5 cut(s)	102, 124, 498, 957, 1041
GsuI	CTGGAG	2 cut(s)	122, 241
HaeII	RGCGCY	1 cut(s)	1067
HaeIII	GGCC	2 cut(s)	287, 800
HapII	CCGG	6 cut(s)	118, 187, 221, 269, 548, 1103
HgaI	GACGC	1 cut(s)	72
HhaI	GCGC	1 cut(s)	1066
Hin1I	GRCGYC	1 cut(s)	64
Hin1II	CATG	5 cut(s)	101, 683, 729, 855, 1230
Hin6I	GCGC	1 cut(s)	1064
HinP1I	GCGC	1 cut(s)	1064
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	3 cut(s)	254, 832, 922
HpaII	CCGG	6 cut(s)	118, 187, 221, 269, 548, 1103
HphI	GGTGA	3 cut(s)	239, 348, 1060
Hpy166II	GTNNAC	4 cut(s)	134, 167, 215, 1075
Hpy188I	TCNGA	3 cut(s)	253, 671, 753
Hpy188III	TCNNGA	9 cut(s)	174, 202, 517, 581, 611, 836, 865, 926, 1046
Hpy8I	GTNNAC	4 cut(s)	134, 167, 215, 1075
HpyCH4III	ACNGT	3 cut(s)	424, 436, 1072
HpyF10VI	GCNNNNNNNGC	5 cut(s)	123, 293, 778, 891, 965
HpyF3I	CTNAG	3 cut(s)	156, 668, 845
Hsp92I	GRCGYC	1 cut(s)	64
Hsp92II	CATG	5 cut(s)	101, 683, 729, 855, 1230
HspAI	GCGC	1 cut(s)	1064
KroI	GCCGGC	1 cut(s)	1102
KroNI	GCCGGC	1 cut(s)	1104
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	482, 523, 535
LmnI	GCTCC	2 cut(s)	120, 271
Lsp1109I	GCAGC	2 cut(s)	484, 968
LweI	GCATC	3 cut(s)	353, 998, 1136
MaeI	CTAG	2 cut(s)	528, 1218
MaeIII	GTNAC	4 cut(s)	334, 354, 763, 926
MalI	GATC	3 cut(s)	484, 525, 537
MbiI	CCGCTC	1 cut(s)	123
MboI	GATC	3 cut(s)	482, 523, 535
MflI	RGATCY	2 cut(s)	482, 523
MhlI	GDGCHC	3 cut(s)	10, 667, 788
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	6 cut(s)	247, 349, 576, 693, 754, 879
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	248
MnlI	CCTC	8 cut(s)	163, 170, 251, 334, 707, 724, 739, 1169
Mox20I	TGGCCA	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	1102
MroXI	GAANNNNTTC	1 cut(s)	576
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	5 cut(s)	194, 246, 426, 696, 878
Msp20I	TGGCCA	1 cut(s)	287
MspI	CCGG	6 cut(s)	118, 187, 221, 269, 548, 1103
MspR9I	CCNGG	4 cut(s)	48, 188, 270, 459
MvaI	CCWGG	2 cut(s)	48, 459
MwoI	GCNNNNNNNGC	5 cut(s)	123, 293, 778, 891, 965
NaeI	GCCGGC	1 cut(s)	1104
NciI	CCSGG	2 cut(s)	188, 270
NdeI	CATATG	2 cut(s)	1036, 1098
NdeII	GATC	3 cut(s)	482, 523, 535
NgoMIV	GCCGGC	1 cut(s)	1102
NlaIII	CATG	5 cut(s)	101, 683, 729, 855, 1230
NlaIV	GGNNCC	3 cut(s)	151, 446, 552
NmuCI	GTSAC	2 cut(s)	354, 926
NspI	RCATGY	2 cut(s)	101, 729
PaeR7I	CTCGAG	1 cut(s)	1046
PdiI	GCCGGC	1 cut(s)	1104
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	2 cut(s)	832, 922
PfoI	TCCNGGA	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	103, 125, 499, 958, 1042
PleI	GAGTC	1 cut(s)	248
PpsI	GAGTC	1 cut(s)	248
PpuMI	RGGWCCY	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	878
Psp124BI	GAGCTC	1 cut(s)	788
Psp5II	RGGWCCY	1 cut(s)	444
Psp6I	CCWGG	2 cut(s)	46, 457
PspGI	CCWGG	2 cut(s)	46, 457
PspN4I	GGNNCC	3 cut(s)	151, 446, 552
PspPI	GGNCC	2 cut(s)	444, 798
PspPPI	RGGWCCY	1 cut(s)	444
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	482, 523
RsaI	GTAC	3 cut(s)	262, 678, 1074
RsaNI	GTAC	3 cut(s)	261, 677, 1073
SacI	GAGCTC	1 cut(s)	788
SaqAI	TTAA	5 cut(s)	194, 246, 426, 696, 878
SatI	GCNGC	5 cut(s)	102, 124, 498, 957, 1041
Sau3AI	GATC	3 cut(s)	482, 523, 535
Sau96I	GGNCC	2 cut(s)	444, 798
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	4 cut(s)	48, 188, 270, 459
SduI	GDGCHC	3 cut(s)	10, 667, 788
SfaNI	GCATC	3 cut(s)	353, 998, 1136
SfcI	CTRYAG	2 cut(s)	39, 432
Sfr274I	CTCGAG	1 cut(s)	1046
SinI	GGWCC	1 cut(s)	444
SlaI	CTCGAG	1 cut(s)	1046
SmlI	CTYRAG	5 cut(s)	17, 144, 908, 939, 1046
SmoI	CTYRAG	5 cut(s)	17, 144, 908, 939, 1046
Sse9I	AATT	6 cut(s)	247, 349, 576, 693, 754, 879
SsiI	CCGC	3 cut(s)	101, 123, 1040
SspI	AATATT	1 cut(s)	1119
SspMI	CTAG	2 cut(s)	528, 1218
SstI	GAGCTC	1 cut(s)	788
StyD4I	CCNGG	4 cut(s)	46, 186, 268, 457
TaaI	ACNGT	3 cut(s)	424, 436, 1072
TaqI	TCGA	3 cut(s)	347, 502, 1047
TasI	AATT	6 cut(s)	247, 349, 576, 693, 754, 879
TatI	WGTACW	2 cut(s)	260, 676
TauI	GCSGC	3 cut(s)	104, 126, 1043
TfiI	GAWTC	2 cut(s)	832, 922
Tru1I	TTAA	5 cut(s)	194, 246, 426, 696, 878
Tru9I	TTAA	5 cut(s)	194, 246, 426, 696, 878
TseFI	GTSAC	2 cut(s)	354, 926
TseI	GCWGC	2 cut(s)	497, 956
Tsp45I	GTSAC	2 cut(s)	354, 926
TspDTI	ATGAA	5 cut(s)	411, 585, 630, 696, 1085
TspGWI	ACGGA	1 cut(s)	475
VpaK11BI	GGWCC	1 cut(s)	444
VspI	ATTAAT	1 cut(s)	878
XapI	RAATTY	3 cut(s)	349, 576, 754
XceI	RCATGY	2 cut(s)	101, 729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	306
XhoI	CTCGAG	1 cut(s)	1046
XmiI	GTMKAC	1 cut(s)	214
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	2 cut(s)	528, 1218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.