Rorug04G0165500

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005136
Physical Location & Seq
Reverse (-)
28937728 .. 28938294
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0165500.1

Sequence Viewer

Length: 222 bp
ATGGAGGCCTGTGTGGCTCTTGGTGCAAGGCCAATGCGGTTCCCTGTATGTCGTCGATCGGAGGACCTGCTCATGGGTCGGGCGCGAGCAGCTACAGCGTCTGATGGCGGTGGTGGTGTTGATTCTGATGGTTTGGTCTCCAAATCTCAAGGTCGTGGCAATGGTCTCATTGTTGGTAATTATCTTGAGGAGGCTGGGAATTTACCTTCAGTTTTCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

73

Amino Acids

7.57

Weight (kDa)

7.81

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 75
AccII CGCG 1 cut(s) 85
AciI CCGC 2 cut(s) 37, 108
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw26I GTCTC 2 cut(s) 142, 170
AlwNI CAGNNNCTG 1 cut(s) 101
AoxI GGCC 2 cut(s) 6, 29
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 199
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 1 cut(s) 64
AvaII GGWCC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 101
BccI CCATC 2 cut(s) 98, 122
BcoDI GTCTC 2 cut(s) 142, 170
BfmI CTRYAG 1 cut(s) 93
BfuAI ACCTGC 1 cut(s) 75
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 132, 206
BsaI GGTCTC 2 cut(s) 142, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 101
BseYI CCCAGC 1 cut(s) 194
Bsh1236I CGCG 1 cut(s) 85
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 2 cut(s) 8, 31
BsiEI CGRYCG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 142, 170
BsnI GGCC 2 cut(s) 8, 31
Bso31I GGTCTC 2 cut(s) 142, 170
Bsp143I GATC 1 cut(s) 56
BspACI CCGC 2 cut(s) 37, 108
BspANI GGCC 2 cut(s) 8, 31
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 41
BspMI ACCTGC 1 cut(s) 75
BspTNI GGTCTC 2 cut(s) 142, 170
BsrDI GCAATG 1 cut(s) 166
BssMI GATC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 87
BstFNI CGCG 1 cut(s) 85
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 1 cut(s) 59
BstMAI GTCTC 2 cut(s) 142, 170
BstMBI GATC 1 cut(s) 56
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 4 cut(s) 14, 23, 89, 95
BstSFI CTRYAG 1 cut(s) 93
BstUI CGCG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 8, 31
BveI ACCTGC 1 cut(s) 75
Cac8I GCNNGC 1 cut(s) 87
CaiI CAGNNNCTG 1 cut(s) 101
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 64
CseI GACGC 1 cut(s) 87
CviAII CATG 1 cut(s) 73
CviJI RGCY 5 cut(s) 8, 17, 31, 92, 194
CviKI_1 RGCY 5 cut(s) 8, 17, 31, 92, 194
DpnI GATC 1 cut(s) 58
DpnII GATC 1 cut(s) 56
Eco147I AGGCCT 1 cut(s) 8
Eco31I GGTCTC 2 cut(s) 142, 170
Eco47I GGWCC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 64
FaeI CATG 1 cut(s) 76
FaiI YATR 2 cut(s) 49, 74
FatI CATG 1 cut(s) 72
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 84
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 198
HaeIII GGCC 2 cut(s) 8, 31
HgaI GACGC 1 cut(s) 87
HhaI GCGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 76
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 3 cut(s) 61, 103, 127
Hpy188III TCNNGA 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 57
HpyAV CCTTC 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 23, 89, 95
Hsp92II CATG 1 cut(s) 76
HspAI GCGC 1 cut(s) 83
Kzo9I GATC 1 cut(s) 56
LpnPI CCDG 4 cut(s) 22, 57, 80, 180
Lsp1109I GCAGC 1 cut(s) 101
MalI GATC 1 cut(s) 58
MboI GATC 1 cut(s) 56
MluCI AATT 2 cut(s) 178, 199
MnlI CCTC 3 cut(s) 55, 181, 184
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 4 cut(s) 14, 23, 89, 95
NdeII GATC 1 cut(s) 56
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 41
PceI AGGCCT 1 cut(s) 8
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 91
Ple19I CGATCG 1 cut(s) 59
PpuMI RGGWCCY 1 cut(s) 64
Psp5II RGGWCCY 1 cut(s) 64
PspFI CCCAGC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 41
PspPI GGNCC 1 cut(s) 64
PspPPI RGGWCCY 1 cut(s) 64
PstNI CAGNNNCTG 1 cut(s) 101
PvuI CGATCG 1 cut(s) 59
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 56
Sau96I GGNCC 1 cut(s) 64
SetI ASST 4 cut(s) 69, 94, 154, 208
SfcI CTRYAG 1 cut(s) 93
SinI GGWCC 1 cut(s) 64
SmlI CTYRAG 2 cut(s) 147, 185
SmoI CTYRAG 2 cut(s) 147, 185
Sse9I AATT 2 cut(s) 178, 199
SseBI AGGCCT 1 cut(s) 8
SsiI CCGC 2 cut(s) 37, 108
StuI AGGCCT 1 cut(s) 8
TaqI TCGA 1 cut(s) 55
TasI AATT 2 cut(s) 178, 199
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 1 cut(s) 89
TspGWI ACGGA 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 64
XapI RAATTY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.