RLG00000007742

RING-variant domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0005136
Physical Location & Seq
Reverse (-)
20554314 .. 20557931
3618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007742

Sequence Viewer

Length: 1290 bp
ATGCAAGCAACTCAAGCAGTGAGTAATGGGGTTACAGAAGCTCCTCCTCCTGCTCAGGCTGGTGCTCAAAACCTCAAGTCAATACAGGAAGAAGCTACAGAACCAGGGCATAGTGGAAGACGCCCCGATATATCACTTGACATACCCCCAAGACATGCAGTGTTTGGCGGTAGCCGGAGCGGCAAGGGTTTACTCCAGTCTCAAGGTTCCTCCAAGGGTAGTCCACGGTCAGGAGGCTTATTCCGGGCTTTAAGCTTCAAGAAGAAAGGTACACTGCCGGATGGTGAGAAAAGTTCCCTCCTTAATTCAGACTCCAGTACAGCTCCGGGAAGCCCAGTAGTGGCCAATAATGCACCAGCATTTTCTTGGACAAAGTGTTCCTCTCTTCCTGTTACACCAGCATCGAATTTGTCACCATCCATTTCTACACCGGTTTCTGCAAGGATGTATAATGAACGGCAGCACAAGCCACAAAAAGAAACTGTTAAGGCTACAGTTTCAAGGTCCCTGTCTGTGCCTGGACGAAATATAGTTATTGTTAGATCGGTATCTTTTGCTGCTCGAAATGAGAACATTCAGACAGATCCTAGTGATGATCAAATAACTCCGGTTCCAGTTGAGCCTGATGATGAAGAAATTCCTGAAGAAGAAGCAGTATGCAGGATTTGTCTTGATGAATGTGAAGAACAAAATACACTCAAAATGGAATGCAGTTGCAAAGGTGCTCTCAGACTTGTACATGAACAGTGTGCAATTAAGTGGTTTAGCACAAGAGGAAACAGGACATGCGAGGTATGTGGGCAGGAGGTTCAGAATTTACCGGTAACCTTGCTTCGGGTGCAGAGTTCTGTTCAAAGGGCCAGCAGACAGAACCAGAACCAACAGAGTTTGAATCCAGAAACGATAAGTGCATGGCAGGACTTCGTGATACTGGTATTAATTAGCACAATATGCTACTTCTTCTTCCTTGAGCAACTACTGATTCGTGACATGAAAACTCAAGCTATTGTAGTTGCAGCACCATTTGCATTTACATTGGGTCTCTTGGCATCCATATTTGCCATTGTCCTTGCAATCAAGGAGTATATATGGACATATGCAGCTCTCGAGTTTGGACTTGTAGCGCTCACCGTACACCTTTTCTATTCTACATTTCATCTGTCGGCTATTTATTCAATATTGCTTGCATCAGTAGTGGGTTTTGGGATATCAATGAGCCTCAACTCCTTGTATATGCAATACTTCACTTGGAGAGTTCAAGTTTCTCAAAACAACTCTAGCCCAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RINGv

Protein Analysis

430

Amino Acids

46.76

Weight (kDa)

6.99

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RINGv PF12906 220 - 266 4.6e-14 RING-variant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 180
AciI CCGC 2 cut(s) 168, 180
AclWI GGATC 1 cut(s) 578
AcoI YGGCCR 1 cut(s) 342
AcsI RAATTY 3 cut(s) 406, 636, 814
AcuI CTGAAG 1 cut(s) 663
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 4 cut(s) 271, 319, 738, 1134
AfeI AGCGCT 1 cut(s) 1125
AfiI CCNNNNNNNGG 3 cut(s) 230, 340, 834
AgeI ACCGGT 2 cut(s) 430, 820
AgsI TTSAA 6 cut(s) 259, 501, 854, 892, 1176, 1259
AjnI CCWGG 2 cut(s) 103, 517
AloI GAACNNNNNNTCC 2 cut(s) 361, 393
AluBI AGCT 6 cut(s) 41, 95, 255, 323, 1004, 1103
AluI AGCT 6 cut(s) 41, 95, 255, 323, 1004, 1103
Alw21I GWGCWC 2 cut(s) 67, 727
Alw26I GTCTC 2 cut(s) 204, 1046
AlwI GGATC 1 cut(s) 578
Ama87I CYCGRG 1 cut(s) 1106
Aor51HI AGCGCT 1 cut(s) 1125
AoxI GGCC 2 cut(s) 342, 858
ApeKI GCWGC 4 cut(s) 460, 557, 1016, 1100
ApoI RAATTY 3 cut(s) 406, 636, 814
AseI ATTAAT 1 cut(s) 938
AsiGI ACCGGT 2 cut(s) 430, 820
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 1 cut(s) 1126
AspS9I GGNCC 2 cut(s) 504, 858
AsuC2I CCSGG 2 cut(s) 245, 327
AsuHPI GGTGA 3 cut(s) 296, 405, 1120
AvaI CYCGRG 1 cut(s) 1106
AvaII GGWCC 1 cut(s) 504
BalI TGGCCA 1 cut(s) 344
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 2 cut(s) 67, 727
BbvI GCAGC 4 cut(s) 472, 544, 1028, 1112
BccI CCATC 2 cut(s) 275, 424
BceAI ACGGC 1 cut(s) 473
BciT130I CCWGG 2 cut(s) 105, 519
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 2 cut(s) 245, 327
BcoDI GTCTC 2 cut(s) 204, 1046
BfaI CTAG 2 cut(s) 588, 1278
BfmI CTRYAG 2 cut(s) 96, 492
BfoI RGCGCY 1 cut(s) 1127
BglI GCCNNNNNGGC 1 cut(s) 180
BisI GCNGC 5 cut(s) 181, 461, 558, 1017, 1101
BlsI GCNGC 5 cut(s) 182, 462, 559, 1018, 1102
Bme1390I CCNGG 4 cut(s) 105, 245, 327, 519
Bme18I GGWCC 1 cut(s) 504
BmeT110I CYCGRG 1 cut(s) 1106
BmgT120I GGNCC 2 cut(s) 504, 858
BmiI GGNNCC 3 cut(s) 208, 506, 612
BmrFI CCNGG 4 cut(s) 105, 245, 327, 519
BmrI ACTGGG 1 cut(s) 329
BmsI GCATC 3 cut(s) 410, 1058, 1196
BmuI ACTGGG 1 cut(s) 329
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 2 cut(s) 179, 298
Bpu10I CCTNAGC 1 cut(s) 54
BpuEI CTTGAG 4 cut(s) 59, 186, 984, 989
BpuMI CCSGG 2 cut(s) 245, 327
BsaBI GATNNNNATC 1 cut(s) 547
BsaHI GRCGYC 1 cut(s) 121
BsaI GGTCTC 1 cut(s) 1046
BsaJI CCNNGG 3 cut(s) 104, 213, 224
BsaWI WCCGGW 3 cut(s) 430, 607, 820
BsaXI ACNNNNNCTCC 2 cut(s) 25, 55
Bsc4I CCNNNNNNNGG 3 cut(s) 230, 340, 834
Bse118I RCCGGY 2 cut(s) 430, 820
Bse1I ACTGG 5 cut(s) 196, 315, 335, 614, 936
Bse8I GATNNNNATC 1 cut(s) 547
BseBI CCWGG 2 cut(s) 105, 519
BseDI CCNNGG 3 cut(s) 104, 213, 224
BseGI GGATG 4 cut(s) 286, 416, 450, 1049
BseJI GATNNNNATC 1 cut(s) 547
BseLI CCNNNNNNNGG 3 cut(s) 230, 340, 834
BseMII CTCAG 2 cut(s) 68, 742
BseNI ACTGG 5 cut(s) 196, 315, 335, 614, 936
BseRI GAGGAG 2 cut(s) 33, 36
BseXI GCAGC 4 cut(s) 472, 544, 1028, 1112
BseYI CCCAGC 1 cut(s) 1282
BsgI GTGCAG 1 cut(s) 860
BshFI GGCC 2 cut(s) 344, 860
BshTI ACCGGT 2 cut(s) 430, 820
BsiHKAI GWGCWC 2 cut(s) 67, 727
BsiHKCI CYCGRG 1 cut(s) 1106
BsiSI CCGG 7 cut(s) 175, 244, 278, 326, 431, 608, 821
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 230, 340, 834
BsmAI GTCTC 2 cut(s) 204, 1046
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 713
BsnI GGCC 2 cut(s) 344, 860
Bso31I GGTCTC 1 cut(s) 1046
BsoBI CYCGRG 1 cut(s) 1106
Bsp1286I GDGCHC 2 cut(s) 67, 727
Bsp1407I TGTACA 1 cut(s) 736
Bsp143I GATC 3 cut(s) 542, 583, 595
BspACI CCGC 2 cut(s) 168, 180
BspANI GGCC 2 cut(s) 344, 860
BspCNI CTCAG 2 cut(s) 67, 741
BspLI GGNNCC 3 cut(s) 208, 506, 612
BspPI GGATC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 1046
BsrBI CCGCTC 1 cut(s) 180
BsrFI RCCGGY 2 cut(s) 430, 820
BsrGI TGTACA 1 cut(s) 736
BsrI ACTGG 5 cut(s) 196, 315, 335, 614, 936
BssAI RCCGGY 2 cut(s) 430, 820
BssECI CCNNGG 3 cut(s) 104, 213, 224
BssMI GATC 3 cut(s) 542, 583, 595
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 105, 519
Bst4CI ACNGT 5 cut(s) 228, 484, 496, 747, 1132
Bst6I CTCTTC 1 cut(s) 390
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 2 cut(s) 951, 1025
BstAUI TGTACA 1 cut(s) 736
BstC8I GCNNGC 3 cut(s) 6, 862, 1185
BstDEI CTNAG 2 cut(s) 54, 728
BstDSI CCRYGG 1 cut(s) 224
BstEII GGTNACC 1 cut(s) 823
BstF5I GGATG 4 cut(s) 286, 416, 450, 1049
BstH2I RGCGCY 1 cut(s) 1127
BstHHI GCGC 1 cut(s) 1126
BstKTI GATC 3 cut(s) 545, 586, 598
BstMAI GTCTC 2 cut(s) 204, 1046
BstMBI GATC 3 cut(s) 542, 583, 595
BstMWI GCNNNNNNNGC 7 cut(s) 14, 180, 350, 466, 838, 951, 1025
BstNI CCWGG 2 cut(s) 105, 519
BstNSI RCATGY 2 cut(s) 158, 789
BstPI GGTNACC 1 cut(s) 823
BstSCI CCNGG 4 cut(s) 103, 243, 325, 517
BstSFI CTRYAG 2 cut(s) 96, 492
BstV1I GCAGC 4 cut(s) 472, 544, 1028, 1112
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BsuRI GGCC 2 cut(s) 344, 860
BtgI CCRYGG 1 cut(s) 224
BtsCI GGATG 4 cut(s) 286, 416, 450, 1049
BtsI GCAGTG 3 cut(s) 24, 165, 272
BtsIMutI CAGTG 4 cut(s) 24, 165, 272, 752
Cac8I GCNNGC 3 cut(s) 6, 862, 1185
CfoI GCGC 1 cut(s) 1126
Cfr10I RCCGGY 2 cut(s) 430, 820
Cfr13I GGNCC 2 cut(s) 504, 858
CseI GACGC 1 cut(s) 129
Csp6I GTAC 4 cut(s) 270, 318, 737, 1133
CspAI ACCGGT 2 cut(s) 430, 820
CviAII CATG 6 cut(s) 155, 740, 786, 912, 991, 1287
CviQI GTAC 4 cut(s) 270, 318, 737, 1133
DdeI CTNAG 2 cut(s) 54, 728
DpnI GATC 3 cut(s) 544, 585, 597
DpnII GATC 3 cut(s) 542, 583, 595
EaeI YGGCCR 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 390
EarI CTCTTC 1 cut(s) 390
Eco130I CCWWGG 1 cut(s) 213
Eco31I GGTCTC 1 cut(s) 1046
Eco32I GATATC 1 cut(s) 1209
Eco47I GGWCC 1 cut(s) 504
Eco47III AGCGCT 1 cut(s) 1125
Eco57I CTGAAG 1 cut(s) 663
Eco88I CYCGRG 1 cut(s) 1106
Eco91I GGTNACC 1 cut(s) 823
EcoO109I RGGNCCY 1 cut(s) 504
EcoO65I GGTNACC 1 cut(s) 823
EcoRII CCWGG 2 cut(s) 103, 517
EcoRV GATATC 1 cut(s) 1209
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 6 cut(s) 158, 743, 789, 915, 994, 1290
FaqI GGGAC 1 cut(s) 490
FatI CATG 6 cut(s) 154, 739, 785, 911, 990, 1286
FauNDI CATATG 1 cut(s) 1096
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 5 cut(s) 181, 461, 558, 1017, 1101
FokI GGATG 4 cut(s) 293, 403, 457, 1036
Fsp4HI GCNGC 5 cut(s) 181, 461, 558, 1017, 1101
FspBI CTAG 2 cut(s) 588, 1278
GlaI GCGC 1 cut(s) 1125
GluI GCNGC 5 cut(s) 181, 461, 558, 1017, 1101
GsaI CCCAGC 1 cut(s) 1286
GsuI CTGGAG 2 cut(s) 179, 298
HaeII RGCGCY 1 cut(s) 1127
HaeIII GGCC 2 cut(s) 344, 860
HapII CCGG 7 cut(s) 175, 244, 278, 326, 431, 608, 821
HgaI GACGC 1 cut(s) 129
HhaI GCGC 1 cut(s) 1126
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 6 cut(s) 158, 743, 789, 915, 994, 1290
Hin6I GCGC 1 cut(s) 1124
HinP1I GCGC 1 cut(s) 1124
HindIII AAGCTT 1 cut(s) 253
HinfI GANTC 3 cut(s) 311, 892, 982
HpaII CCGG 7 cut(s) 175, 244, 278, 326, 431, 608, 821
HphI GGTGA 3 cut(s) 296, 405, 1120
Hpy166II GTNNAC 4 cut(s) 191, 224, 272, 1135
Hpy188I TCNGA 4 cut(s) 310, 579, 731, 813
Hpy188III TCNNGA 8 cut(s) 231, 259, 641, 671, 896, 925, 986, 1106
Hpy8I GTNNAC 4 cut(s) 191, 224, 272, 1135
HpyCH4III ACNGT 5 cut(s) 228, 484, 496, 747, 1132
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 180, 350, 466, 838, 951, 1025
HpyF3I CTNAG 2 cut(s) 54, 728
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 6 cut(s) 158, 743, 789, 915, 994, 1290
HspAI GCGC 1 cut(s) 1124
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 542, 583, 595
LmnI GCTCC 3 cut(s) 46, 177, 328
Lsp1109I GCAGC 4 cut(s) 472, 544, 1028, 1112
LweI GCATC 3 cut(s) 410, 1058, 1196
MaeI CTAG 2 cut(s) 588, 1278
MaeIII GTNAC 5 cut(s) 31, 391, 411, 823, 986
MalI GATC 3 cut(s) 544, 585, 597
MbiI CCGCTC 1 cut(s) 180
MboI GATC 3 cut(s) 542, 583, 595
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 2 cut(s) 67, 727
MlsI TGGCCA 1 cut(s) 344
MluCI AATT 6 cut(s) 304, 406, 636, 753, 814, 939
MluNI TGGCCA 1 cut(s) 344
MlyI GAGTC 1 cut(s) 305
Mox20I TGGCCA 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 636
MscI TGGCCA 1 cut(s) 344
MseI TTAA 5 cut(s) 251, 303, 486, 756, 938
Msp20I TGGCCA 1 cut(s) 344
MspI CCGG 7 cut(s) 175, 244, 278, 326, 431, 608, 821
MspR9I CCNGG 4 cut(s) 105, 245, 327, 519
Mva1269I GAATGC 1 cut(s) 713
MvaI CCWGG 2 cut(s) 105, 519
MwoI GCNNNNNNNGC 7 cut(s) 14, 180, 350, 466, 838, 951, 1025
NciI CCSGG 2 cut(s) 245, 327
NdeI CATATG 1 cut(s) 1096
NdeII GATC 3 cut(s) 542, 583, 595
NlaIII CATG 6 cut(s) 158, 743, 789, 915, 994, 1290
NlaIV GGNNCC 3 cut(s) 208, 506, 612
NmuCI GTSAC 2 cut(s) 411, 986
NspI RCATGY 2 cut(s) 158, 789
PaeR7I CTCGAG 1 cut(s) 1106
PctI GAATGC 1 cut(s) 713
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 2 cut(s) 892, 982
PfoI TCCNGGA 1 cut(s) 325
PinAI ACCGGT 2 cut(s) 430, 820
PkrI GCNGC 5 cut(s) 182, 462, 559, 1018, 1102
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PpuMI RGGWCCY 1 cut(s) 504
PshBI ATTAAT 1 cut(s) 938
Psp5II RGGWCCY 1 cut(s) 504
Psp6I CCWGG 2 cut(s) 103, 517
PspEI GGTNACC 1 cut(s) 823
PspFI CCCAGC 1 cut(s) 1282
PspGI CCWGG 2 cut(s) 103, 517
PspN4I GGNNCC 3 cut(s) 208, 506, 612
PspPI GGNCC 2 cut(s) 504, 858
PspPPI RGGWCCY 1 cut(s) 504
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 4 cut(s) 271, 319, 738, 1134
RsaNI GTAC 4 cut(s) 270, 318, 737, 1133
SaqAI TTAA 5 cut(s) 251, 303, 486, 756, 938
SatI GCNGC 5 cut(s) 181, 461, 558, 1017, 1101
Sau3AI GATC 3 cut(s) 542, 583, 595
Sau96I GGNCC 2 cut(s) 504, 858
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 4 cut(s) 105, 245, 327, 519
SduI GDGCHC 2 cut(s) 67, 727
SfaNI GCATC 3 cut(s) 410, 1058, 1196
SfcI CTRYAG 2 cut(s) 96, 492
Sfr274I CTCGAG 1 cut(s) 1106
SinI GGWCC 1 cut(s) 504
SlaI CTCGAG 1 cut(s) 1106
SmlI CTYRAG 6 cut(s) 12, 74, 201, 968, 999, 1106
SmoI CTYRAG 6 cut(s) 12, 74, 201, 968, 999, 1106
Sse9I AATT 6 cut(s) 304, 406, 636, 753, 814, 939
SsiI CCGC 2 cut(s) 168, 180
SspI AATATT 1 cut(s) 1179
SspMI CTAG 2 cut(s) 588, 1278
StyD4I CCNGG 4 cut(s) 103, 243, 325, 517
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 5 cut(s) 228, 484, 496, 747, 1132
TaqI TCGA 3 cut(s) 404, 562, 1107
TasI AATT 6 cut(s) 304, 406, 636, 753, 814, 939
TatI WGTACW 2 cut(s) 317, 736
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 892, 982
Tru1I TTAA 5 cut(s) 251, 303, 486, 756, 938
Tru9I TTAA 5 cut(s) 251, 303, 486, 756, 938
TscAI CASTG 4 cut(s) 24, 165, 279, 752
TseFI GTSAC 2 cut(s) 411, 986
TseI GCWGC 4 cut(s) 460, 557, 1016, 1100
Tsp45I GTSAC 2 cut(s) 411, 986
TspDTI ATGAA 6 cut(s) 468, 645, 690, 756, 1007, 1145
TspRI CASTG 4 cut(s) 24, 165, 279, 752
VpaK11BI GGWCC 1 cut(s) 504
VspI ATTAAT 1 cut(s) 938
XapI RAATTY 3 cut(s) 406, 636, 814
XceI RCATGY 2 cut(s) 158, 789
XcmI CCANNNNNNNNNTGG 1 cut(s) 363
XhoI CTCGAG 1 cut(s) 1106
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 2 cut(s) 588, 1278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.