Prupe.1G143600_v2.0.a1

RING-variant domain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
11313425 .. 11317969
4545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G143600.2

Sequence Viewer

Length: 1281 bp
ATGCAAGCCACTCAAGCAGTGAGCAATGGAGCTGCAGAAGCTCCTCCTGCTCAGGCTGGTCCCGAAAATGTGAAGGAAGAAGCTACAGACCCAGGACCCGCTGGGAGGCGCCCAGACATATCACTTCAAATACCCCCAAGGCCTGCGGCTTTTGGCAGTAGCCGCAGCGGAAAGGGTTTACTCCAGTCTCAAGGCTCCTCTAAGGGTAGCTCACTATCAGGTGGCCTCTTCCGGGGTTTAAGCTTCAAGAAAAAAGCTACTCTACCAGATGGTGAGAAAAGCTTCCTCCTTAGTACAGACCCCAGTAAAGCTCCTGAAAGTCCTACAATAGCCAATTTTGCATCAGCTCTTCCTTGGGCAAGATGTACCTCACTTCCTGTTACGCCGGCGTCAAATTTGTCCCCCTCTGTTTCTACACCAATCTCTGCGAGGATGTATAATGAAGTGCACAAGCCACATAAAGAAACTGTTCAGGCCACAGTTTCAAGGTCCCTGTCTGTGCCTGGACGAAATATTGTCATTGTAAGATCGGTATCTTTTGCTACCCGAAATGAGCAGACCCAAACAGATCCTAGTAATGATCAAATAACTCCAGTTCCAGTGGAGGAGACCAATGATGAAGAAATTCCAGAAGAAGAAGCAGTGTGCAGGATATGTCTTGATGTATGTGAAGAACAAAATACACTCAAAATGGAATGCTTTTGCAAAGGTGCTCTCAGACTTGTGCATGAAGAGTGTGCCATTAAGTGGTTTAGCACAAAAGGAAACAAGAAATGTGATGTATGTGGGAAAGAGGTTCAGAATTTACCTGTAACCTTACTTCGGGTGCAGAGCTCTGTTCAAAGGGGTACCAGACAGGAGCACAATCAACAGAGCTTGCGTCCAGAAACGATAAGTGCCTGGCAGGACTTTGTGGTACTGGTCTTAATTAGCACAATATGCTATTTCTTCTTCCTTGAGCAGCTACTGATTGGTGACTTGAAAACTCAAGCGATTGTTATTGCAGCACCATTTGCATTTACATTGGGCCTCTTGGCATCCATATTTTCCATCATCCTTGCAATCAAGGAGTATATATGGACATATGCAGCTCTTGAGTTTGCACTTGTGGCCATTCTCGTCCATCTGCTCTACTCCGTACTTCATCTGATGGCTATTTACTCAATATTGATTGCTTCGGTATTGGGTTTTGGTATAGCCATGAGCCTCAACTCATTGTATATGCACTATTTCACCTGGAGAGTTCAAGTTGCACAAAATCAAAACTCCAGCCCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

46.43

Weight (kDa)

6.67

Isoelectric Point (pI)

56.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 848
AccB1I GGYRCC 2 cut(s) 108, 848
AccB7I CCANNNNNTGG 1 cut(s) 747
AciI CCGC 4 cut(s) 99, 146, 163, 168
AclWI GGATC 1 cut(s) 563
AcoI YGGCCR 1 cut(s) 1110
AcsI RAATTY 3 cut(s) 394, 624, 802
AcyI GRCGYC 2 cut(s) 109, 389
AfaI GTAC 5 cut(s) 295, 367, 850, 918, 1140
AfiI CCNNNNNNNGG 4 cut(s) 105, 232, 747, 822
AgsI TTSAA 6 cut(s) 128, 247, 486, 842, 982, 1247
AjnI CCWGG 4 cut(s) 91, 502, 899, 1235
Alw21I GWGCWC 4 cut(s) 450, 715, 836, 864
Alw26I GTCTC 2 cut(s) 192, 602
Alw44I GTGCAC 1 cut(s) 446
AlwI GGATC 1 cut(s) 563
AlwNI CAGNNNCTG 1 cut(s) 967
AoxI GGCC 5 cut(s) 140, 223, 474, 1027, 1110
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 5 cut(s) 32, 165, 961, 1004, 1088
ApoI RAATTY 3 cut(s) 394, 624, 802
Asp700I GAANNNNTTC 3 cut(s) 281, 468, 624
Asp718I GGTACC 1 cut(s) 848
AspLEI GCGC 1 cut(s) 111
AspS9I GGNCC 4 cut(s) 59, 95, 489, 1027
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 3 cut(s) 284, 986, 1225
AvaII GGWCC 3 cut(s) 59, 95, 489
BaeGI GKGCMC 1 cut(s) 450
BalI TGGCCA 1 cut(s) 1112
BanI GGYRCC 2 cut(s) 108, 848
BanII GRGCYC 1 cut(s) 836
BarI GAAGNNNNNNTAC 2 cut(s) 804, 836
Bbv12I GWGCWC 4 cut(s) 450, 715, 836, 864
BbvI GCAGC 5 cut(s) 19, 177, 973, 1016, 1100
BccI CCATC 4 cut(s) 263, 1058, 1131, 1144
BciT130I CCWGG 4 cut(s) 93, 504, 901, 1237
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 1 cut(s) 233
BcoDI GTCTC 2 cut(s) 192, 602
BfaI CTAG 1 cut(s) 573
BfmI CTRYAG 2 cut(s) 33, 84
BfoI RGCGCY 1 cut(s) 112
BisI GCNGC 7 cut(s) 33, 147, 163, 166, 962, 1005, 1089
BlsI GCNGC 7 cut(s) 34, 148, 164, 167, 963, 1006, 1090
Bme1390I CCNGG 5 cut(s) 93, 233, 504, 901, 1237
Bme18I GGWCC 3 cut(s) 59, 95, 489
BmgT120I GGNCC 4 cut(s) 59, 95, 489, 1027
BmiI GGNNCC 6 cut(s) 61, 97, 110, 196, 491, 850
BmrFI CCNGG 5 cut(s) 93, 233, 504, 901, 1237
BmrI ACTGGG 2 cut(s) 297, 1268
BmsI GCATC 2 cut(s) 350, 1046
BmuI ACTGGG 2 cut(s) 297, 1268
BpmI CTGGAG 4 cut(s) 167, 576, 1252, 1258
Bpu10I CCTNAGC 1 cut(s) 51
BpuEI CTTGAG 4 cut(s) 174, 972, 977, 1115
BpuMI CCSGG 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 532
BsaHI GRCGYC 2 cut(s) 109, 389
BsaI GGTCTC 1 cut(s) 602
BsaJI CCNNGG 4 cut(s) 91, 137, 232, 353
Bsc4I CCNNNNNNNGG 4 cut(s) 105, 232, 747, 822
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 6 cut(s) 184, 303, 593, 599, 924, 1274
Bse3DI GCAATG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 532
BseBI CCWGG 4 cut(s) 93, 504, 901, 1237
BseDI CCNNGG 4 cut(s) 91, 137, 232, 353
BseGI GGATG 3 cut(s) 438, 1037, 1053
BseJI GATNNNNATC 1 cut(s) 532
BseLI CCNNNNNNNGG 4 cut(s) 105, 232, 747, 822
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 65, 730
BseNI ACTGG 6 cut(s) 184, 303, 593, 599, 924, 1274
BseRI GAGGAG 3 cut(s) 33, 187, 620
BseSI GKGCMC 1 cut(s) 450
BseXI GCAGC 5 cut(s) 19, 177, 973, 1016, 1100
BseYI CCCAGC 1 cut(s) 101
BsgI GTGCAG 2 cut(s) 667, 848
BshFI GGCC 5 cut(s) 142, 225, 476, 1029, 1112
BshNI GGYRCC 2 cut(s) 108, 848
BsiHKAI GWGCWC 4 cut(s) 450, 715, 836, 864
BsiSI CCGG 2 cut(s) 232, 386
BslFI GGGAC 3 cut(s) 45, 385, 475
BslI CCNNNNNNNGG 4 cut(s) 105, 232, 747, 822
BsmAI GTCTC 2 cut(s) 192, 602
BsmFI GGGAC 3 cut(s) 45, 385, 475
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 5 cut(s) 142, 225, 476, 1029, 1112
Bso31I GGTCTC 1 cut(s) 602
Bsp1286I GDGCHC 4 cut(s) 450, 715, 836, 864
Bsp143I GATC 3 cut(s) 527, 568, 580
BspACI CCGC 4 cut(s) 99, 146, 163, 168
BspANI GGCC 5 cut(s) 142, 225, 476, 1029, 1112
BspCNI CTCAG 2 cut(s) 64, 729
BspLI GGNNCC 6 cut(s) 61, 97, 110, 196, 491, 850
BspMAI CTGCAG 1 cut(s) 37
BspPI GGATC 1 cut(s) 563
BspQI GCTCTTC 1 cut(s) 354
BspT107I GGYRCC 2 cut(s) 108, 848
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 385
BsrI ACTGG 6 cut(s) 184, 303, 593, 599, 924, 1274
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 4 cut(s) 91, 137, 232, 353
BssMI GATC 3 cut(s) 527, 568, 580
BssNI GRCGYC 2 cut(s) 109, 389
BssT1I CCWWGG 2 cut(s) 137, 353
Bst2UI CCWGG 4 cut(s) 93, 504, 901, 1237
Bst4CI ACNGT 2 cut(s) 469, 481
Bst6I CTCTTC 3 cut(s) 233, 354, 726
BstACI GRCGYC 2 cut(s) 109, 389
BstAPI GCANNNNNTGC 2 cut(s) 939, 1013
BstC8I GCNNGC 4 cut(s) 6, 144, 387, 878
BstDEI CTNAG 4 cut(s) 51, 201, 290, 716
BstF5I GGATG 3 cut(s) 438, 1037, 1053
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 1 cut(s) 111
BstKTI GATC 3 cut(s) 530, 571, 583
BstMAI GTCTC 2 cut(s) 192, 602
BstMBI GATC 3 cut(s) 527, 568, 580
BstMWI GCNNNNNNNGC 8 cut(s) 14, 38, 47, 162, 338, 939, 1013, 1109
BstNI CCWGG 4 cut(s) 93, 504, 901, 1237
BstSCI CCNGG 5 cut(s) 91, 231, 502, 899, 1235
BstSFI CTRYAG 2 cut(s) 33, 84
BstSLI GKGCMC 1 cut(s) 450
BstV1I GCAGC 5 cut(s) 19, 177, 973, 1016, 1100
BstX2I RGATCY 1 cut(s) 568
BstYI RGATCY 1 cut(s) 568
BsuRI GGCC 5 cut(s) 142, 225, 476, 1029, 1112
BtsCI GGATG 3 cut(s) 438, 1037, 1053
BtsI GCAGTG 2 cut(s) 24, 648
BtsIMutI CAGTG 3 cut(s) 24, 606, 648
Cac8I GCNNGC 4 cut(s) 6, 144, 387, 878
CaiI CAGNNNCTG 1 cut(s) 967
CfoI GCGC 1 cut(s) 111
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 59, 95, 489, 1027
CseI GACGC 2 cut(s) 378, 869
Csp6I GTAC 5 cut(s) 294, 366, 849, 917, 1139
CviAII CATG 2 cut(s) 728, 1201
CviQI GTAC 5 cut(s) 294, 366, 849, 917, 1139
DdeI CTNAG 4 cut(s) 51, 201, 290, 716
DinI GGCGCC 1 cut(s) 110
DpnI GATC 3 cut(s) 529, 570, 582
DpnII GATC 3 cut(s) 527, 568, 580
EaeI YGGCCR 1 cut(s) 1110
Eam1104I CTCTTC 3 cut(s) 233, 354, 726
EarI CTCTTC 3 cut(s) 233, 354, 726
Ecl136II GAGCTC 1 cut(s) 834
Eco130I CCWWGG 2 cut(s) 137, 353
Eco147I AGGCCT 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 836
Eco31I GGTCTC 1 cut(s) 602
Eco47I GGWCC 3 cut(s) 59, 95, 489
Eco53kI GAGCTC 1 cut(s) 834
EcoICRI GAGCTC 1 cut(s) 834
EcoO109I RGGNCCY 2 cut(s) 95, 489
EcoRII CCWGG 4 cut(s) 91, 502, 899, 1235
EcoT14I CCWWGG 2 cut(s) 137, 353
EcoT38I GRGCYC 1 cut(s) 836
EgeI GGCGCC 1 cut(s) 110
EheI GGCGCC 1 cut(s) 110
ErhI CCWWGG 2 cut(s) 137, 353
FaeI CATG 2 cut(s) 731, 1204
FaqI GGGAC 3 cut(s) 45, 385, 475
FatI CATG 2 cut(s) 727, 1200
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 1084
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 7 cut(s) 33, 147, 163, 166, 962, 1005, 1089
FokI GGATG 3 cut(s) 445, 1024, 1040
FriOI GRGCYC 1 cut(s) 836
Fsp4HI GCNGC 7 cut(s) 33, 147, 163, 166, 962, 1005, 1089
FspBI CTAG 1 cut(s) 573
GlaI GCGC 1 cut(s) 110
GluI GCNGC 7 cut(s) 33, 147, 163, 166, 962, 1005, 1089
GsaI CCCAGC 1 cut(s) 105
GsuI CTGGAG 4 cut(s) 167, 576, 1252, 1258
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 5 cut(s) 142, 225, 476, 1029, 1112
HapII CCGG 2 cut(s) 232, 386
HgaI GACGC 2 cut(s) 378, 869
HhaI GCGC 1 cut(s) 111
Hin1I GRCGYC 2 cut(s) 109, 389
Hin1II CATG 2 cut(s) 731, 1204
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 2 cut(s) 241, 280
HpaII CCGG 2 cut(s) 232, 386
HphI GGTGA 3 cut(s) 284, 986, 1225
Hpy166II GTNNAC 2 cut(s) 179, 448
Hpy188I TCNGA 3 cut(s) 719, 801, 1149
Hpy188III TCNNGA 7 cut(s) 62, 247, 314, 629, 659, 884, 1094
Hpy8I GTNNAC 2 cut(s) 179, 448
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 469, 481
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 38, 47, 162, 338, 939, 1013, 1109
HpyF3I CTNAG 4 cut(s) 51, 201, 290, 716
Hsp92I GRCGYC 2 cut(s) 109, 389
Hsp92II CATG 2 cut(s) 731, 1204
HspAI GCGC 1 cut(s) 109
KasI GGCGCC 1 cut(s) 108
KpnI GGTACC 1 cut(s) 852
KroI GCCGGC 1 cut(s) 385
KroNI GCCGGC 1 cut(s) 387
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 3 cut(s) 527, 568, 580
LguI GCTCTTC 1 cut(s) 354
LmnI GCTCC 5 cut(s) 29, 46, 200, 316, 859
Lsp1109I GCAGC 5 cut(s) 19, 177, 973, 1016, 1100
LweI GCATC 2 cut(s) 350, 1046
MaeI CTAG 1 cut(s) 573
MaeIII GTNAC 3 cut(s) 379, 811, 974
MalI GATC 3 cut(s) 529, 570, 582
MboI GATC 3 cut(s) 527, 568, 580
MflI RGATCY 1 cut(s) 568
MhlI GDGCHC 4 cut(s) 450, 715, 836, 864
MlsI TGGCCA 1 cut(s) 1112
MluCI AATT 5 cut(s) 334, 394, 624, 802, 927
MluNI TGGCCA 1 cut(s) 1112
Mly113I GGCGCC 1 cut(s) 109
Mox20I TGGCCA 1 cut(s) 1112
MreI CGCCGGCG 1 cut(s) 385
MroNI GCCGGC 1 cut(s) 385
MroXI GAANNNNTTC 3 cut(s) 281, 468, 624
MscI TGGCCA 1 cut(s) 1112
MseI TTAA 3 cut(s) 239, 744, 926
Msp20I TGGCCA 1 cut(s) 1112
MspA1I CMGCKG 2 cut(s) 101, 168
MspI CCGG 2 cut(s) 232, 386
MspR9I CCNGG 5 cut(s) 93, 233, 504, 901, 1237
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 4 cut(s) 93, 504, 901, 1237
MwoI GCNNNNNNNGC 8 cut(s) 14, 38, 47, 162, 338, 939, 1013, 1109
NaeI GCCGGC 1 cut(s) 387
NarI GGCGCC 1 cut(s) 109
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 1084
NdeII GATC 3 cut(s) 527, 568, 580
NgoMIV GCCGGC 1 cut(s) 385
NlaIII CATG 2 cut(s) 731, 1204
NlaIV GGNNCC 6 cut(s) 61, 97, 110, 196, 491, 850
NmuCI GTSAC 1 cut(s) 974
PceI AGGCCT 1 cut(s) 142
PciSI GCTCTTC 1 cut(s) 354
PctI GAATGC 1 cut(s) 701
PdiI GCCGGC 1 cut(s) 387
PdmI GAANNNNTTC 3 cut(s) 281, 468, 624
PflMI CCANNNNNTGG 1 cut(s) 747
PkrI GCNGC 7 cut(s) 34, 148, 164, 167, 963, 1006, 1090
PluTI GGCGCC 1 cut(s) 112
PpuMI RGGWCCY 2 cut(s) 95, 489
Psp124BI GAGCTC 1 cut(s) 836
Psp5II RGGWCCY 2 cut(s) 95, 489
Psp6I CCWGG 4 cut(s) 91, 502, 899, 1235
PspFI CCCAGC 1 cut(s) 101
PspGI CCWGG 4 cut(s) 91, 502, 899, 1235
PspN4I GGNNCC 6 cut(s) 61, 97, 110, 196, 491, 850
PspPI GGNCC 4 cut(s) 59, 95, 489, 1027
PspPPI RGGWCCY 2 cut(s) 95, 489
PstI CTGCAG 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 967
PsuI RGATCY 1 cut(s) 568
RsaI GTAC 5 cut(s) 295, 367, 850, 918, 1140
RsaNI GTAC 5 cut(s) 294, 366, 849, 917, 1139
SacI GAGCTC 1 cut(s) 836
SapI GCTCTTC 1 cut(s) 354
SaqAI TTAA 3 cut(s) 239, 744, 926
SatI GCNGC 7 cut(s) 33, 147, 163, 166, 962, 1005, 1089
Sau3AI GATC 3 cut(s) 527, 568, 580
Sau96I GGNCC 4 cut(s) 59, 95, 489, 1027
ScrFI CCNGG 5 cut(s) 93, 233, 504, 901, 1237
SduI GDGCHC 4 cut(s) 450, 715, 836, 864
SfaNI GCATC 2 cut(s) 350, 1046
SfcI CTRYAG 2 cut(s) 33, 84
SfoI GGCGCC 1 cut(s) 110
SgrAI CRCCGGYG 1 cut(s) 385
SinI GGWCC 3 cut(s) 59, 95, 489
SmlI CTYRAG 5 cut(s) 12, 189, 956, 987, 1094
SmoI CTYRAG 5 cut(s) 12, 189, 956, 987, 1094
Sse9I AATT 5 cut(s) 334, 394, 624, 802, 927
SseBI AGGCCT 1 cut(s) 142
SsiI CCGC 4 cut(s) 99, 146, 163, 168
SspDI GGCGCC 1 cut(s) 108
SspI AATATT 2 cut(s) 514, 1167
SspMI CTAG 1 cut(s) 573
SstI GAGCTC 1 cut(s) 836
StuI AGGCCT 1 cut(s) 142
StyD4I CCNGG 5 cut(s) 91, 231, 502, 899, 1235
StyI CCWWGG 2 cut(s) 137, 353
TaaI ACNGT 2 cut(s) 469, 481
TasI AATT 5 cut(s) 334, 394, 624, 802, 927
TatI WGTACW 1 cut(s) 293
TauI GCSGC 2 cut(s) 149, 165
Tru1I TTAA 3 cut(s) 239, 744, 926
Tru9I TTAA 3 cut(s) 239, 744, 926
TscAI CASTG 3 cut(s) 24, 606, 648
TseFI GTSAC 1 cut(s) 974
TseI GCWGC 5 cut(s) 32, 165, 961, 1004, 1088
Tsp45I GTSAC 1 cut(s) 974
TspDTI ATGAA 4 cut(s) 456, 633, 744, 1133
TspGWI ACGGA 1 cut(s) 1126
TspRI CASTG 3 cut(s) 24, 606, 648
Van91I CCANNNNNTGG 1 cut(s) 747
VneI GTGCAC 1 cut(s) 446
VpaK11BI GGWCC 3 cut(s) 59, 95, 489
XapI RAATTY 3 cut(s) 394, 624, 802
XmnI GAANNNNTTC 3 cut(s) 281, 468, 624
XspI CTAG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.