AT3G06840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012224
Physical Location & Seq
Forward (+)
2156736 .. 2157916
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G06840.1

Sequence Viewer

Length: 564 bp
ATGTCAAACATTTCCCCAATCTTCTCCATCTCCAACTCTCAACATTTCAGCGACTATGGCTTCGATCCCCAACTCCACTACTTTCAGGTTATGGAAGAAGCGAGGAAGCATAAGAGAGAAACGTCATCAAAATCATACACGAACGGTCTTCAATTCAAGATCCAGAAACCCATTTCAAAAGACAACCCGACCCGGTCCACAATGCACAACGACAAGAAGAAGAAACGGTGTTGGTGGAAGAAAGCTCTCCCTTTTTTCAAATGGCGGAAATGGCCAATCTCCACCGTCGGCGTGAACGAAGATCGTAGGGTCAGGAACTTTCGCTCCGTAACCGGGTCCATGTCAATGTCGGGTCCGATTTACGCAACGGAGAGTCTAATAAGTGGGTCGAACACACCGTATCGTACAACAACGAGTAAACCTTCGTCGGGACCTATAGCGGGAACATTGACGCCGGCGAGGAAAGGTGACGTGGCGATTCCTTATCTGAGCTTACGAGAGCTTAACATGGAGCAGCCACAGAGGATTTCTATCTCTTCTTCCCCAATTTACTTGGTCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.37

Weight (kDa)

10.18

Isoelectric Point (pI)

55.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06840
fragaria_vesca FvH4_4g18620
malus_domestica MD13G1165100.v1.1 MD13G1165200.v1.1 MD16G1164800.v1.1
prunus_persica Prupe.1G124100_v2.0.a1
pyrus_communis pycom13g14120 pycom13g14150 pycom16g13950
rosa_chinensis RchiOBHm_Chr4g0423321
rosa_laevigata RLG00000007569
rosa_multiflora Rmu_co8278673.1_g000001 Rmu_sc0005307.1_g000001
rosa_roxburghii Rroxscaffold_5G00365500
rosa_rugosa Rorug04G0186500
rosa_samantha Rh4AG245700 Rh4BG251100 Rh4CG259500
rosa_wichuraiana Rw4G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 265, 440
AclWI GGATC 2 cut(s) 59, 154
AcoI YGGCCR 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 452
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 3 cut(s) 333, 428, 440
AgsI TTSAA 4 cut(s) 152, 157, 177, 259
AjiI CACGTC 1 cut(s) 472
AloI GAACNNNNNNTCC 2 cut(s) 308, 340
AluBI AGCT 3 cut(s) 245, 492, 502
AluI AGCT 3 cut(s) 245, 492, 502
AlwI GGATC 2 cut(s) 59, 154
AoxI GGCC 1 cut(s) 272
ApeKI GCWGC 1 cut(s) 514
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspS9I GGNCC 4 cut(s) 195, 336, 353, 431
AsuC2I CCSGG 2 cut(s) 193, 334
AsuHPI GGTGA 1 cut(s) 479
AvaII GGWCC 4 cut(s) 195, 336, 353, 431
BalI TGGCCA 1 cut(s) 274
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 35
BcnI CCSGG 2 cut(s) 193, 334
BfmI CTRYAG 1 cut(s) 435
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
Bme1390I CCNGG 2 cut(s) 193, 334
Bme18I GGWCC 4 cut(s) 195, 336, 353, 431
BmgBI CACGTC 1 cut(s) 472
BmgT120I GGNCC 4 cut(s) 195, 336, 353, 431
BmiI GGNNCC 3 cut(s) 337, 354, 432
BmrFI CCNGG 2 cut(s) 193, 334
BpiI GAAGAC 1 cut(s) 140
BpuMI CCSGG 2 cut(s) 193, 334
BsaAI YACGTR 1 cut(s) 561
BsaBI GATNNNNATC 1 cut(s) 530
BsaHI GRCGYC 1 cut(s) 452
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 428, 440
Bse118I RCCGGY 1 cut(s) 454
Bse8I GATNNNNATC 1 cut(s) 530
BseJI GATNNNNATC 1 cut(s) 530
BseLI CCNNNNNNNGG 3 cut(s) 333, 428, 440
BseMII CTCAG 1 cut(s) 479
BseXI GCAGC 1 cut(s) 526
BshFI GGCC 1 cut(s) 274
BsiSI CCGG 3 cut(s) 193, 333, 455
BslFI GGGAC 1 cut(s) 444
BslI CCNNNNNNNGG 3 cut(s) 333, 428, 440
BsmFI GGGAC 1 cut(s) 444
BsnI GGCC 1 cut(s) 274
Bsp143I GATC 3 cut(s) 64, 159, 301
BspACI CCGC 2 cut(s) 265, 440
BspANI GGCC 1 cut(s) 274
BspCNI CTCAG 1 cut(s) 480
BspLI GGNNCC 3 cut(s) 337, 354, 432
BspPI GGATC 2 cut(s) 59, 154
BsrFI RCCGGY 1 cut(s) 454
BssAI RCCGGY 1 cut(s) 454
BssMI GATC 3 cut(s) 64, 159, 301
BssNI GRCGYC 1 cut(s) 452
Bst4CI ACNGT 4 cut(s) 146, 228, 286, 399
Bst6I CTCTTC 1 cut(s) 541
BstACI GRCGYC 1 cut(s) 452
BstBAI YACGTR 1 cut(s) 561
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 488
BstKTI GATC 3 cut(s) 67, 162, 304
BstMBI GATC 3 cut(s) 64, 159, 301
BstMWI GCNNNNNNNGC 2 cut(s) 57, 271
BstSCI CCNGG 2 cut(s) 191, 332
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 1 cut(s) 274
BtrI CACGTC 1 cut(s) 472
Cac8I GCNNGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 454
Cfr13I GGNCC 4 cut(s) 195, 336, 353, 431
CseI GACGC 1 cut(s) 460
Csp6I GTAC 1 cut(s) 405
CviAII CATG 2 cut(s) 340, 508
CviJI RGCY 6 cut(s) 60, 245, 274, 492, 502, 517
CviKI_1 RGCY 6 cut(s) 60, 245, 274, 492, 502, 517
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 1 cut(s) 488
DpnI GATC 3 cut(s) 66, 161, 303
DpnII GATC 3 cut(s) 64, 159, 301
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 541
EarI CTCTTC 1 cut(s) 541
EciI GGCGGA 1 cut(s) 280
Eco47I GGWCC 4 cut(s) 195, 336, 353, 431
EcoO109I RGGNCCY 1 cut(s) 431
FaeI CATG 2 cut(s) 343, 511
FaiI YATR 7 cut(s) 57, 92, 111, 136, 341, 437, 509
FaqI GGGAC 1 cut(s) 444
FatI CATG 2 cut(s) 339, 507
FauI CCCGC 1 cut(s) 433
Fnu4HI GCNGC 1 cut(s) 515
Fsp4HI GCNGC 1 cut(s) 515
GluI GCNGC 1 cut(s) 515
HaeIII GGCC 1 cut(s) 274
HapII CCGG 3 cut(s) 193, 333, 455
HgaI GACGC 1 cut(s) 460
Hin1I GRCGYC 1 cut(s) 452
Hin1II CATG 2 cut(s) 343, 511
HinfI GANTC 2 cut(s) 373, 478
HpaII CCGG 3 cut(s) 193, 333, 455
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 3 cut(s) 198, 295, 419
Hpy188I TCNGA 2 cut(s) 357, 489
Hpy188III TCNNGA 4 cut(s) 157, 163, 313, 429
Hpy8I GTNNAC 3 cut(s) 198, 295, 419
Hpy99I CGWCG 2 cut(s) 290, 430
HpyAV CCTTC 1 cut(s) 432
HpyCH4III ACNGT 4 cut(s) 146, 228, 286, 399
HpyCH4IV ACGT 3 cut(s) 122, 471, 560
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 2 cut(s) 57, 271
HpyF3I CTNAG 1 cut(s) 488
HpySE526I ACGT 3 cut(s) 122, 471, 560
Hsp92I GRCGYC 1 cut(s) 452
Hsp92II CATG 2 cut(s) 343, 511
KroI GCCGGC 1 cut(s) 454
KroNI GCCGGC 1 cut(s) 456
Kzo9I GATC 3 cut(s) 64, 159, 301
LmnI GCTCC 2 cut(s) 329, 511
LpnPI CCDG 6 cut(s) 71, 176, 206, 298, 346, 468
Lsp1109I GCAGC 1 cut(s) 526
MaeII ACGT 3 cut(s) 122, 471, 560
MaeIII GTNAC 3 cut(s) 328, 467, 556
MalI GATC 3 cut(s) 66, 161, 303
MboI GATC 3 cut(s) 64, 159, 301
MboII GAAGA 9 cut(s) 13, 107, 140, 229, 232, 250, 311, 528, 531
MflI RGATCY 1 cut(s) 159
MlsI TGGCCA 1 cut(s) 274
MluCI AATT 2 cut(s) 152, 546
MluNI TGGCCA 1 cut(s) 274
MlyI GAGTC 1 cut(s) 382
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 3 cut(s) 96, 453, 516
Mox20I TGGCCA 1 cut(s) 274
MreI CGCCGGCG 1 cut(s) 454
MroNI GCCGGC 1 cut(s) 454
MscI TGGCCA 1 cut(s) 274
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 344
Msp20I TGGCCA 1 cut(s) 274
MspI CCGG 3 cut(s) 193, 333, 455
MspR9I CCNGG 2 cut(s) 193, 334
MwoI GCNNNNNNNGC 2 cut(s) 57, 271
NaeI GCCGGC 1 cut(s) 456
NciI CCSGG 2 cut(s) 193, 334
NdeII GATC 3 cut(s) 64, 159, 301
NgoMIV GCCGGC 1 cut(s) 454
NlaIII CATG 2 cut(s) 343, 511
NlaIV GGNNCC 3 cut(s) 337, 354, 432
NmuCI GTSAC 2 cut(s) 467, 556
PcsI WCGNNNNNNNCGW 2 cut(s) 294, 395
PdiI GCCGGC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 478
PflFI GACNNNGTC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 516
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
Ppu21I YACGTR 1 cut(s) 561
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
PspN4I GGNNCC 3 cut(s) 337, 354, 432
PspPI GGNCC 4 cut(s) 195, 336, 353, 431
PspPPI RGGWCCY 1 cut(s) 431
PsuI RGATCY 1 cut(s) 159
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 3 cut(s) 64, 159, 301
Sau96I GGNCC 4 cut(s) 195, 336, 353, 431
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 2 cut(s) 193, 334
SfcI CTRYAG 1 cut(s) 435
SgrAI CRCCGGYG 1 cut(s) 454
SinI GGWCC 4 cut(s) 195, 336, 353, 431
SmiMI CAYNNNNRTG 1 cut(s) 344
Sse9I AATT 2 cut(s) 152, 546
SsiI CCGC 2 cut(s) 265, 440
StyD4I CCNGG 2 cut(s) 191, 332
TaaI ACNGT 4 cut(s) 146, 228, 286, 399
TaiI ACGT 3 cut(s) 125, 474, 563
TaqI TCGA 2 cut(s) 63, 389
TasI AATT 2 cut(s) 152, 546
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TseFI GTSAC 2 cut(s) 467, 556
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 2 cut(s) 467, 556
TspGWI ACGGA 2 cut(s) 316, 383
Tth111I GACNNNGTC 1 cut(s) 193
VpaK11BI GGWCC 4 cut(s) 195, 336, 353, 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.