Prupe.1G124100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012224
Physical Location & Seq
Forward (+)
9778318 .. 9779524
1207 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G124100.1

Sequence Viewer

Length: 543 bp
ATGTCTAACAAGTCACCAATATTTCCGATGCCACAACCTCAACACTTCAGCGACTATGGCTTTGACCCTCAAATCGACTATTTTCAGGTCCTGGAAGAAGCAAGAAGACACAAGCGTGAGACAACAAGATCCATAGACTCCATACATTTCAAGCTCCAGAAACCCATCTCCAAAGACGACCCCAAAAAGACCCACAAGGCCAAGAAGAAGCGCTGGTGGAAAAGCGCTCTGCTTTTCTTCAAATGCATCACCCACCACCACCATGGCCACAACAATCGCAGCGAAGAAGACGTGCACCAGGCCAGGGCTAATGCCTTCAGGGCCTCAATTTCAGGTCCCGTCTATATCACAGAGAGCAGAAGTGGCTCGAGCACGCCTTACCGTACGACAAGCAGGCCGTCGTCGGGACCCCTCTCCGGAACTCTGTCTCCGGCAAGTAGGGGTGAGCTGGACATTCCTTATCTCAGCCTCAGGGAGCTTAACATGGAGCAGCAGCAACAGAGGAACTCTACCTCTGCCATGCCCATATATTTGGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.73

Weight (kDa)

9.86

Isoelectric Point (pI)

70.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06840
fragaria_vesca FvH4_4g18620
malus_domestica MD13G1165100.v1.1 MD13G1165200.v1.1 MD16G1164800.v1.1
prunus_persica Prupe.1G124100_v2.0.a1
pyrus_communis pycom13g14120 pycom13g14150 pycom16g13950
rosa_chinensis RchiOBHm_Chr4g0423321
rosa_laevigata RLG00000007569
rosa_multiflora Rmu_co8278673.1_g000001 Rmu_sc0005307.1_g000001
rosa_roxburghii Rroxscaffold_5G00365500
rosa_rugosa Rorug04G0186500
rosa_samantha Rh4AG245700 Rh4BG251100 Rh4CG259500
rosa_wichuraiana Rw4G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 416
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 1 cut(s) 265
AcuI CTGAAG 2 cut(s) 31, 301
AfaI GTAC 1 cut(s) 385
AfeI AGCGCT 2 cut(s) 212, 226
AfiI CCNNNNNNNGG 3 cut(s) 304, 404, 416
AgsI TTSAA 2 cut(s) 151, 241
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 3 cut(s) 90, 297, 302
AleI CACNNNNGTG 1 cut(s) 114
AloI GAACNNNNNNTCC 2 cut(s) 412, 444
AluBI AGCT 3 cut(s) 154, 448, 478
AluI AGCT 3 cut(s) 154, 448, 478
Alw21I GWGCWC 2 cut(s) 297, 374
Alw26I GTCTC 2 cut(s) 113, 432
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 1 cut(s) 123
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 367
Aor13HI TCCGGA 1 cut(s) 416
Aor51HI AGCGCT 2 cut(s) 212, 226
AoxI GGCC 5 cut(s) 198, 265, 300, 321, 395
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 3 cut(s) 279, 490, 493
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 2 cut(s) 213, 227
AspS9I GGNCC 4 cut(s) 88, 321, 335, 407
AsuHPI GGTGA 3 cut(s) 6, 241, 455
AvaI CYCGRG 1 cut(s) 367
AvaII GGWCC 3 cut(s) 88, 335, 407
AxyI CCTNAGG 1 cut(s) 470
BaeGI GKGCMC 1 cut(s) 297
BalI TGGCCA 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 112, 294
Bbv12I GWGCWC 2 cut(s) 297, 374
BbvI GCAGC 3 cut(s) 291, 502, 505
BccI CCATC 1 cut(s) 173
BceAI ACGGC 1 cut(s) 382
BciT130I CCWGG 3 cut(s) 92, 299, 304
BcoDI GTCTC 2 cut(s) 113, 432
BfoI RGCGCY 2 cut(s) 214, 228
BglI GCCNNNNNGGC 1 cut(s) 320
BisI GCNGC 3 cut(s) 280, 491, 494
BlsI GCNGC 3 cut(s) 281, 492, 495
Bme1390I CCNGG 3 cut(s) 92, 299, 304
Bme18I GGWCC 3 cut(s) 88, 335, 407
BmeT110I CYCGRG 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 88, 321, 335, 407
BmiI GGNNCC 3 cut(s) 337, 408, 409
BmrFI CCNGG 3 cut(s) 92, 299, 304
BmsI GCATC 2 cut(s) 18, 255
BpiI GAAGAC 2 cut(s) 112, 294
BpmI CTGGAG 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 262, 303
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 412, 442
Bsc4I CCNNNNNNNGG 3 cut(s) 304, 404, 416
Bse21I CCTNAGG 1 cut(s) 470
BseAI TCCGGA 1 cut(s) 416
BseBI CCWGG 3 cut(s) 92, 299, 304
BseDI CCNNGG 2 cut(s) 262, 303
BseLI CCNNNNNNNGG 3 cut(s) 304, 404, 416
BseMII CTCAG 2 cut(s) 478, 484
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 3 cut(s) 291, 502, 505
BshFI GGCC 5 cut(s) 200, 267, 302, 323, 397
BsiHKAI GWGCWC 2 cut(s) 297, 374
BsiHKCI CYCGRG 1 cut(s) 367
BsiSI CCGG 2 cut(s) 417, 431
BsiWI CGTACG 1 cut(s) 383
BslFI GGGAC 2 cut(s) 321, 420
BslI CCNNNNNNNGG 3 cut(s) 304, 404, 416
BsmAI GTCTC 2 cut(s) 113, 432
BsmFI GGGAC 2 cut(s) 321, 420
BsnI GGCC 5 cut(s) 200, 267, 302, 323, 397
BsoBI CYCGRG 1 cut(s) 367
Bsp1286I GDGCHC 2 cut(s) 297, 374
Bsp13I TCCGGA 1 cut(s) 416
Bsp143I GATC 1 cut(s) 128
Bsp19I CCATGG 1 cut(s) 262
BspANI GGCC 5 cut(s) 200, 267, 302, 323, 397
BspCNI CTCAG 2 cut(s) 477, 483
BspEI TCCGGA 1 cut(s) 416
BspLI GGNNCC 3 cut(s) 337, 408, 409
BspPI GGATC 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 262, 303
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 3 cut(s) 92, 299, 304
Bst4CI ACNGT 1 cut(s) 383
BstC8I GCNNGC 2 cut(s) 374, 395
BstDEI CTNAG 2 cut(s) 464, 470
BstDSI CCRYGG 1 cut(s) 262
BstH2I RGCGCY 2 cut(s) 214, 228
BstHHI GCGC 2 cut(s) 213, 227
BstKTI GATC 1 cut(s) 131
BstMAI GTCTC 2 cut(s) 113, 432
BstMBI GATC 1 cut(s) 128
BstMWI GCNNNNNNNGC 3 cut(s) 57, 320, 363
BstNI CCWGG 3 cut(s) 92, 299, 304
BstSCI CCNGG 3 cut(s) 90, 297, 302
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 3 cut(s) 291, 502, 505
BstV2I GAAGAC 2 cut(s) 112, 294
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 2 cut(s) 263, 532
BstYI RGATCY 1 cut(s) 128
Bsu36I CCTNAGG 1 cut(s) 470
BsuRI GGCC 5 cut(s) 200, 267, 302, 323, 397
BtgI CCRYGG 1 cut(s) 262
BtrI CACGTC 1 cut(s) 292
Cac8I GCNNGC 2 cut(s) 374, 395
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 2 cut(s) 213, 227
Cfr13I GGNCC 4 cut(s) 88, 321, 335, 407
Csp6I GTAC 1 cut(s) 384
CviAII CATG 3 cut(s) 263, 484, 520
CviQI GTAC 1 cut(s) 384
DdeI CTNAG 2 cut(s) 464, 470
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 262
Eco47I GGWCC 3 cut(s) 88, 335, 407
Eco47III AGCGCT 2 cut(s) 212, 226
Eco57I CTGAAG 2 cut(s) 31, 301
Eco81I CCTNAGG 1 cut(s) 470
Eco88I CYCGRG 1 cut(s) 367
EcoO109I RGGNCCY 4 cut(s) 88, 321, 335, 407
EcoRII CCWGG 3 cut(s) 90, 297, 302
EcoT14I CCWWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 266, 487, 523
FaiI YATR 9 cut(s) 57, 134, 143, 264, 345, 485, 521, 527, 529
FaqI GGGAC 2 cut(s) 321, 420
FatI CATG 3 cut(s) 262, 483, 519
Fnu4HI GCNGC 3 cut(s) 280, 491, 494
Fsp4HI GCNGC 3 cut(s) 280, 491, 494
GlaI GCGC 2 cut(s) 212, 226
GluI GCNGC 3 cut(s) 280, 491, 494
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 2 cut(s) 214, 228
HaeIII GGCC 5 cut(s) 200, 267, 302, 323, 397
HapII CCGG 2 cut(s) 417, 431
HhaI GCGC 2 cut(s) 213, 227
Hin1II CATG 3 cut(s) 266, 487, 523
Hin6I GCGC 2 cut(s) 211, 225
HinP1I GCGC 2 cut(s) 211, 225
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 417, 431
HphI GGTGA 3 cut(s) 6, 241, 455
Hpy166II GTNNAC 1 cut(s) 295
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 3 cut(s) 157, 405, 417
Hpy8I GTNNAC 1 cut(s) 295
Hpy99I CGWCG 2 cut(s) 403, 406
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 383
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 246, 295
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 320, 363
HpyF3I CTNAG 2 cut(s) 464, 470
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 266, 487, 523
HspAI GCGC 2 cut(s) 211, 225
KflI GGGWCCC 1 cut(s) 407
Kpn2I TCCGGA 1 cut(s) 416
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 3 cut(s) 159, 475, 487
Lsp1109I GCAGC 3 cut(s) 291, 502, 505
LweI GCATC 2 cut(s) 18, 255
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 12, 535
MalI GATC 1 cut(s) 130
MboI GATC 1 cut(s) 128
MboII GAAGA 6 cut(s) 107, 117, 217, 229, 296, 299
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 2 cut(s) 297, 374
MlsI TGGCCA 1 cut(s) 267
MluCI AATT 1 cut(s) 327
MluNI TGGCCA 1 cut(s) 267
MlyI GAGTC 1 cut(s) 131
MnlI CCTC 7 cut(s) 48, 78, 334, 422, 479, 495, 523
Mox20I TGGCCA 1 cut(s) 267
Mph1103I ATGCAT 1 cut(s) 248
MroI TCCGGA 1 cut(s) 416
MscI TGGCCA 1 cut(s) 267
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 2 cut(s) 114, 261
Msp20I TGGCCA 1 cut(s) 267
MspI CCGG 2 cut(s) 417, 431
MspR9I CCNGG 3 cut(s) 92, 299, 304
MvaI CCWGG 3 cut(s) 92, 299, 304
MwoI GCNNNNNNNGC 3 cut(s) 57, 320, 363
NcoI CCATGG 1 cut(s) 262
NdeII GATC 1 cut(s) 128
NlaIII CATG 3 cut(s) 266, 487, 523
NlaIV GGNNCC 3 cut(s) 337, 408, 409
NmuCI GTSAC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 248
OliI CACNNNNGTG 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 367
Pfl23II CGTACG 1 cut(s) 383
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 3 cut(s) 281, 492, 495
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 3 cut(s) 88, 335, 407
Psp5II RGGWCCY 3 cut(s) 88, 335, 407
Psp6I CCWGG 3 cut(s) 90, 297, 302
PspGI CCWGG 3 cut(s) 90, 297, 302
PspLI CGTACG 1 cut(s) 383
PspN4I GGNNCC 3 cut(s) 337, 408, 409
PspPI GGNCC 4 cut(s) 88, 321, 335, 407
PspPPI RGGWCCY 3 cut(s) 88, 335, 407
PspXI VCTCGAGB 1 cut(s) 367
PstNI CAGNNNCTG 1 cut(s) 91
PsuI RGATCY 1 cut(s) 128
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
RseI CAYNNNNRTG 2 cut(s) 114, 261
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 3 cut(s) 280, 491, 494
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 4 cut(s) 88, 321, 335, 407
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 3 cut(s) 92, 299, 304
SduI GDGCHC 2 cut(s) 297, 374
SetI ASST 8 cut(s) 40, 90, 156, 294, 337, 450, 480, 515
SfaNI GCATC 2 cut(s) 18, 255
Sfr274I CTCGAG 1 cut(s) 367
SinI GGWCC 3 cut(s) 88, 335, 407
SlaI CTCGAG 1 cut(s) 367
SmiMI CAYNNNNRTG 2 cut(s) 114, 261
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 1 cut(s) 327
SspI AATATT 1 cut(s) 21
StyD4I CCNGG 3 cut(s) 90, 297, 302
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 383
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 75, 368
TasI AATT 1 cut(s) 327
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TseFI GTSAC 1 cut(s) 12
TseI GCWGC 3 cut(s) 279, 490, 493
Tsp45I GTSAC 1 cut(s) 12
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 88, 335, 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.