pycom13g14120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012224
Physical Location & Seq
Forward (+)
10101816 .. 10102469
654 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14120.2

Sequence Viewer

Length: 561 bp
ATGTCCAGCAAGTCACCAATCTTTCCGATGCCACAACCCCAACACTTCAGCGACTATGGCTTCGACCCCCAAGTCGACTACTTTCAGGTTTCGGAGGAAGCAAGGAGGCACAAGCGGGAGACGACGAGATCCATAGACTCCAAACACTTCAAGCTCCAAAAGCCCATCTCAAAAGAAAAGCCACACCACAACAAAACCAAGAAGAAGCGCTGGTGGAAAAGCGCTCTGCATTTCTTCAAATGGAACAAGGTGACACCCCACCACCACCACCGCCGTGTCTCCGCCATACGCGGCGGCGATGAAGATGTCCAACACCAGGCCAGGGCCAAAGCCTTCCGGGGATCGATTTCTGGGCCGGTTTATATCACTGAGAGCAGAAGCGGGTCGTGCGCTCCTTGCCTGAGTACTACCCGGCCGTCGTCTTGGCCGCTCGCCGGGACTATGTCTCCGGCGAGTAAGGATGAGATGGGCATTCCTTACCTGAACCTGAGGGAGCTCAACATGGAGCAGCAGCAAAAGAGGAACTCTACCTCTGCCGTGCCTATATATTTGGTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.47

Weight (kDa)

10.08

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06840
fragaria_vesca FvH4_4g18620
malus_domestica MD13G1165100.v1.1 MD13G1165200.v1.1 MD16G1164800.v1.1
prunus_persica Prupe.1G124100_v2.0.a1
pyrus_communis pycom13g14120 pycom13g14150 pycom16g13950
rosa_chinensis RchiOBHm_Chr4g0423321
rosa_laevigata RLG00000007569
rosa_multiflora Rmu_co8278673.1_g000001 Rmu_sc0005307.1_g000001
rosa_roxburghii Rroxscaffold_5G00365500
rosa_rugosa Rorug04G0186500
rosa_samantha Rh4AG245700 Rh4BG251100 Rh4CG259500
rosa_wichuraiana Rw4G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 75
AccII CGCG 1 cut(s) 291
AciI CCGC 7 cut(s) 115, 271, 282, 291, 294, 381, 428
AclWI GGATC 2 cut(s) 123, 349
AcoI YGGCCR 2 cut(s) 413, 425
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 1 cut(s) 406
AfeI AGCGCT 2 cut(s) 209, 223
AfiI CCNNNNNNNGG 3 cut(s) 316, 322, 434
AgsI TTSAA 2 cut(s) 151, 238
AjnI CCWGG 2 cut(s) 315, 320
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 2 cut(s) 154, 496
AluI AGCT 2 cut(s) 154, 496
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 3 cut(s) 113, 283, 450
AlwI GGATC 2 cut(s) 123, 349
Aor51HI AGCGCT 2 cut(s) 209, 223
AoxI GGCC 5 cut(s) 318, 324, 353, 413, 425
ApeKI GCWGC 2 cut(s) 508, 511
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 3 cut(s) 210, 224, 392
AspS9I GGNCC 2 cut(s) 324, 353
AsuC2I CCSGG 3 cut(s) 338, 412, 436
AsuHPI GGTGA 2 cut(s) 6, 262
AxyI CCTNAGG 1 cut(s) 488
BanII GRGCYC 1 cut(s) 498
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 520, 523
BccI CCATC 2 cut(s) 173, 460
BceAI ACGGC 3 cut(s) 258, 400, 521
BciT130I CCWGG 2 cut(s) 317, 322
BcnI CCSGG 3 cut(s) 338, 412, 436
BcoDI GTCTC 3 cut(s) 113, 283, 450
BfoI RGCGCY 2 cut(s) 211, 225
BisI GCNGC 5 cut(s) 292, 295, 428, 509, 512
BlsI GCNGC 5 cut(s) 293, 296, 429, 510, 513
BmcAI AGTACT 1 cut(s) 406
Bme1390I CCNGG 5 cut(s) 317, 322, 338, 412, 436
BmgT120I GGNCC 2 cut(s) 324, 353
BmrFI CCNGG 5 cut(s) 317, 322, 338, 412, 436
BmsI GCATC 1 cut(s) 18
BpuMI CCSGG 3 cut(s) 338, 412, 436
Bsa29I ATCGAT 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 321, 337
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 316, 322, 434
Bse118I RCCGGY 1 cut(s) 355
Bse21I CCTNAGG 1 cut(s) 488
BseBI CCWGG 2 cut(s) 317, 322
BseCI ATCGAT 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 321, 337
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 3 cut(s) 316, 322, 434
BseMII CTCAG 3 cut(s) 360, 392, 479
BseX3I CGGCCG 1 cut(s) 413
BseXI GCAGC 2 cut(s) 520, 523
Bsh1236I CGCG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 416
BshFI GGCC 5 cut(s) 320, 326, 355, 415, 427
BshVI ATCGAT 1 cut(s) 344
BsiEI CGRYCG 1 cut(s) 416
BsiHKAI GWGCWC 1 cut(s) 498
BsiSI CCGG 5 cut(s) 337, 356, 412, 435, 449
BslFI GGGAC 1 cut(s) 451
BslI CCNNNNNNNGG 3 cut(s) 316, 322, 434
BsmAI GTCTC 3 cut(s) 113, 283, 450
BsmBI CGTCTC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 451
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 5 cut(s) 320, 326, 355, 415, 427
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 2 cut(s) 128, 341
BspACI CCGC 7 cut(s) 115, 271, 282, 291, 294, 381, 428
BspANI GGCC 5 cut(s) 320, 326, 355, 415, 427
BspCNI CTCAG 3 cut(s) 361, 393, 480
BspDI ATCGAT 1 cut(s) 344
BspFNI CGCG 1 cut(s) 291
BspPI GGATC 2 cut(s) 123, 349
BsrBI CCGCTC 1 cut(s) 430
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 321, 337
BssMI GATC 2 cut(s) 128, 341
Bst2UI CCWGG 2 cut(s) 317, 322
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 3 cut(s) 369, 401, 488
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 2 cut(s) 211, 225
BstHHI GCGC 3 cut(s) 210, 224, 392
BstKTI GATC 2 cut(s) 131, 344
BstMAI GTCTC 3 cut(s) 113, 283, 450
BstMBI GATC 2 cut(s) 128, 341
BstMCI CGRYCG 1 cut(s) 416
BstMWI GCNNNNNNNGC 4 cut(s) 57, 160, 387, 396
BstNI CCWGG 2 cut(s) 317, 322
BstSCI CCNGG 5 cut(s) 315, 320, 336, 410, 434
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 520, 523
BstX2I RGATCY 1 cut(s) 128
BstYI RGATCY 1 cut(s) 128
BstZI CGGCCG 1 cut(s) 413
Bsu15I ATCGAT 1 cut(s) 344
Bsu36I CCTNAGG 1 cut(s) 488
BsuRI GGCC 5 cut(s) 320, 326, 355, 415, 427
BsuTUI ATCGAT 1 cut(s) 344
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 1 cut(s) 466
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 3 cut(s) 210, 224, 392
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 324, 353
ClaI ATCGAT 1 cut(s) 344
Csp6I GTAC 1 cut(s) 405
CviAII CATG 1 cut(s) 502
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 3 cut(s) 369, 401, 488
DpnI GATC 2 cut(s) 130, 343
DpnII GATC 2 cut(s) 128, 341
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 2 cut(s) 413, 425
EagI CGGCCG 1 cut(s) 413
EciI GGCGGA 1 cut(s) 271
Ecl136II GAGCTC 1 cut(s) 496
EclXI CGGCCG 1 cut(s) 413
Eco24I GRGCYC 1 cut(s) 498
Eco47III AGCGCT 2 cut(s) 209, 223
Eco52I CGGCCG 1 cut(s) 413
Eco53kI GAGCTC 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 488
EcoICRI GAGCTC 1 cut(s) 496
EcoRII CCWGG 2 cut(s) 315, 320
EcoT38I GRGCYC 1 cut(s) 498
Esp3I CGTCTC 1 cut(s) 113
FaeI CATG 1 cut(s) 505
FaiI YATR 8 cut(s) 57, 134, 287, 363, 443, 503, 545, 547
FaqI GGGAC 1 cut(s) 451
FatI CATG 1 cut(s) 501
FauI CCCGC 2 cut(s) 108, 374
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 5 cut(s) 292, 295, 428, 509, 512
FokI GGATG 1 cut(s) 473
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 5 cut(s) 292, 295, 428, 509, 512
GlaI GCGC 3 cut(s) 209, 223, 391
GluI GCNGC 5 cut(s) 292, 295, 428, 509, 512
HaeII RGCGCY 2 cut(s) 211, 225
HaeIII GGCC 5 cut(s) 320, 326, 355, 415, 427
HapII CCGG 5 cut(s) 337, 356, 412, 435, 449
HhaI GCGC 3 cut(s) 210, 224, 392
Hin1II CATG 1 cut(s) 505
Hin6I GCGC 3 cut(s) 208, 222, 390
HinP1I GCGC 3 cut(s) 208, 222, 390
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 137
HpaII CCGG 5 cut(s) 337, 356, 412, 435, 449
HphI GGTGA 2 cut(s) 6, 262
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 2 cut(s) 27, 94
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 2 cut(s) 127, 421
HpyAV CCTTC 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 229
HpyF10VI GCNNNNNNNGC 4 cut(s) 57, 160, 387, 396
HpyF3I CTNAG 3 cut(s) 369, 401, 488
Hsp92II CATG 1 cut(s) 505
HspAI GCGC 3 cut(s) 208, 222, 390
Kzo9I GATC 2 cut(s) 128, 341
LmnI GCTCC 4 cut(s) 159, 397, 493, 505
Lsp1109I GCAGC 2 cut(s) 520, 523
LweI GCATC 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 12, 250, 553
MalI GATC 2 cut(s) 130, 343
MbiI CCGCTC 1 cut(s) 430
MboI GATC 2 cut(s) 128, 341
MboII GAAGA 3 cut(s) 214, 226, 314
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 498
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 5 cut(s) 88, 99, 483, 513, 541
MseI TTAA 1 cut(s) 559
MslI CAYNNNNRTG 1 cut(s) 273
MspI CCGG 5 cut(s) 337, 356, 412, 435, 449
MspR9I CCNGG 5 cut(s) 317, 322, 338, 412, 436
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 2 cut(s) 317, 322
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 4 cut(s) 57, 160, 387, 396
NciI CCSGG 3 cut(s) 338, 412, 436
NdeII GATC 2 cut(s) 128, 341
NlaIII CATG 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 12, 250
OliI CACNNNNGTG 1 cut(s) 273
PctI GAATGC 1 cut(s) 471
PflFI GACNNNGTC 1 cut(s) 442
PkrI GCNGC 5 cut(s) 293, 296, 429, 510, 513
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
Psp124BI GAGCTC 1 cut(s) 498
Psp6I CCWGG 2 cut(s) 315, 320
PspGI CCWGG 2 cut(s) 315, 320
PspPI GGNCC 2 cut(s) 324, 353
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 442
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 273
SacI GAGCTC 1 cut(s) 498
SalI GTCGAC 1 cut(s) 74
SaqAI TTAA 1 cut(s) 559
SatI GCNGC 5 cut(s) 292, 295, 428, 509, 512
Sau3AI GATC 2 cut(s) 128, 341
Sau96I GGNCC 2 cut(s) 324, 353
ScaI AGTACT 1 cut(s) 406
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 5 cut(s) 317, 322, 338, 412, 436
SduI GDGCHC 1 cut(s) 498
SetI ASST 7 cut(s) 90, 156, 252, 483, 489, 498, 533
SfaNI GCATC 1 cut(s) 18
SmiMI CAYNNNNRTG 1 cut(s) 273
SsiI CCGC 7 cut(s) 115, 271, 282, 291, 294, 381, 428
SstI GAGCTC 1 cut(s) 498
StyD4I CCNGG 5 cut(s) 315, 320, 336, 410, 434
TaqI TCGA 3 cut(s) 63, 75, 344
TatI WGTACW 1 cut(s) 404
TauI GCSGC 3 cut(s) 294, 297, 430
Tru1I TTAA 1 cut(s) 559
Tru9I TTAA 1 cut(s) 559
TscAI CASTG 1 cut(s) 373
TseFI GTSAC 2 cut(s) 12, 250
TseI GCWGC 2 cut(s) 508, 511
Tsp45I GTSAC 2 cut(s) 12, 250
TspDTI ATGAA 1 cut(s) 315
TspRI CASTG 1 cut(s) 373
Tth111I GACNNNGTC 1 cut(s) 442
XmiI GTMKAC 1 cut(s) 75
ZrmI AGTACT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.