Rmu_co8278673.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8278673.1
OG0012224
Physical Location & Seq
Reverse (-)
263 .. 805
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8278673.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
ctgtttaactctccgcagcatcatttacgatctcacacattttcatgttctttgcatatccctcaggtccttgaagaagctagaaggcacaagcgtgacggaacgagatccatagactcgattcacttcaagctccagaagcccatttccaaggacgaccactactccaagaagcctcacaagaagaagcgctggtggaaaagcgctttgcttttcttcaaatggggctggacccaccaccaccaccacgactcggcccaccgccacaatcgccgtggtggccgggaggacgtgcaccaggccagggccaaggttttccgggcttccatttccgggccggtttatatcacagaaagcaggagcgggtcgagcacaccgtaccggacagcgagccggccgtcgtcgggaccgctggccgggactatgtcgccggtgagtaagggagagatggagattccgtatctgagcctgagggagcttaacatggagcagcaacagagggtgtctacctcatcagccatgcccatttacttggttacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.83

Weight (kDa)

10.48

Isoelectric Point (pI)

71.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06840
fragaria_vesca FvH4_4g18620
malus_domestica MD13G1165100.v1.1 MD13G1165200.v1.1 MD16G1164800.v1.1
prunus_persica Prupe.1G124100_v2.0.a1
pyrus_communis pycom13g14120 pycom13g14150 pycom16g13950
rosa_chinensis RchiOBHm_Chr4g0423321
rosa_laevigata RLG00000007569
rosa_multiflora Rmu_co8278673.1_g000001 Rmu_sc0005307.1_g000001
rosa_roxburghii Rroxscaffold_5G00365500
rosa_rugosa Rorug04G0186500
rosa_samantha Rh4AG245700 Rh4BG251100 Rh4CG259500
rosa_wichuraiana Rw4G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 363
AccI GTMKAC 1 cut(s) 506
AciI CCGC 4 cut(s) 14, 262, 363, 410
AclWI GGATC 1 cut(s) 102
AcoI YGGCCR 3 cut(s) 280, 395, 414
AfaI GTAC 1 cut(s) 380
AfeI AGCGCT 2 cut(s) 191, 205
AfiI CCNNNNNNNGG 5 cut(s) 253, 304, 333, 404, 416
AgsI TTSAA 3 cut(s) 74, 130, 220
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 297, 302
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 3 cut(s) 80, 133, 478
AluI AGCT 3 cut(s) 80, 133, 478
Alw21I GWGCWC 2 cut(s) 297, 374
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 1 cut(s) 102
Aor51HI AGCGCT 2 cut(s) 191, 205
AoxI GGCC 7 cut(s) 255, 280, 300, 306, 335, 395, 414
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 16, 490
AspLEI GCGC 2 cut(s) 192, 206
AspS9I GGNCC 6 cut(s) 67, 231, 256, 306, 335, 407
AsuC2I CCSGG 4 cut(s) 284, 320, 334, 418
AsuHPI GGTGA 1 cut(s) 445
AvaII GGWCC 3 cut(s) 67, 231, 407
AxyI CCTNAGG 2 cut(s) 63, 470
BaeGI GKGCMC 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 297, 374
BbvI GCAGC 2 cut(s) 28, 502
BccI CCATC 1 cut(s) 442
BceAI ACGGC 2 cut(s) 258, 382
BciT130I CCWGG 2 cut(s) 299, 304
BcnI CCSGG 4 cut(s) 284, 320, 334, 418
BfaI CTAG 1 cut(s) 81
BfoI RGCGCY 2 cut(s) 193, 207
BglI GCCNNNNNGGC 1 cut(s) 279
BisI GCNGC 2 cut(s) 17, 491
BlsI GCNGC 2 cut(s) 18, 492
Bme1390I CCNGG 6 cut(s) 284, 299, 304, 320, 334, 418
Bme18I GGWCC 3 cut(s) 67, 231, 407
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 6 cut(s) 67, 231, 256, 306, 335, 407
BmiI GGNNCC 2 cut(s) 233, 408
BmrFI CCNGG 6 cut(s) 284, 299, 304, 320, 334, 418
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 119
BpuMI CCSGG 4 cut(s) 284, 320, 334, 418
BsaJI CCNNGG 4 cut(s) 150, 274, 303, 309
BsaWI WCCGGW 1 cut(s) 381
BsaXI ACNNNNNCTCC 4 cut(s) 149, 179, 443, 473
Bsc4I CCNNNNNNNGG 5 cut(s) 253, 304, 333, 404, 416
Bse118I RCCGGY 3 cut(s) 337, 393, 430
Bse21I CCTNAGG 2 cut(s) 63, 470
BseBI CCWGG 2 cut(s) 299, 304
BseDI CCNNGG 4 cut(s) 150, 274, 303, 309
BseLI CCNNNNNNNGG 5 cut(s) 253, 304, 333, 404, 416
BseMII CTCAG 3 cut(s) 77, 455, 461
BseSI GKGCMC 1 cut(s) 297
BseX3I CGGCCG 1 cut(s) 395
BseXI GCAGC 2 cut(s) 28, 502
Bsh1285I CGRYCG 1 cut(s) 398
BshFI GGCC 7 cut(s) 257, 282, 302, 308, 337, 397, 416
BsiEI CGRYCG 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 297, 374
BsiSI CCGG 8 cut(s) 283, 319, 333, 338, 382, 394, 417, 431
BslFI GGGAC 2 cut(s) 420, 433
BslI CCNNNNNNNGG 5 cut(s) 253, 304, 333, 404, 416
BsmFI GGGAC 2 cut(s) 420, 433
BsnI GGCC 7 cut(s) 257, 282, 302, 308, 337, 397, 416
Bsp1286I GDGCHC 2 cut(s) 297, 374
Bsp143I GATC 2 cut(s) 29, 107
BspACI CCGC 4 cut(s) 14, 262, 363, 410
BspANI GGCC 7 cut(s) 257, 282, 302, 308, 337, 397, 416
BspCNI CTCAG 3 cut(s) 76, 456, 462
BspLI GGNNCC 2 cut(s) 233, 408
BspPI GGATC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 3 cut(s) 337, 393, 430
BssAI RCCGGY 3 cut(s) 337, 393, 430
BssECI CCNNGG 4 cut(s) 150, 274, 303, 309
BssMI GATC 2 cut(s) 29, 107
BssT1I CCWWGG 2 cut(s) 150, 309
Bst2UI CCWGG 2 cut(s) 299, 304
Bst4CI ACNGT 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 391, 395, 414
BstDEI CTNAG 3 cut(s) 63, 464, 470
BstDSI CCRYGG 1 cut(s) 274
BstH2I RGCGCY 2 cut(s) 193, 207
BstHHI GCGC 2 cut(s) 192, 206
BstKTI GATC 2 cut(s) 32, 110
BstMBI GATC 2 cut(s) 29, 107
BstMCI CGRYCG 1 cut(s) 398
BstMWI GCNNNNNNNGC 4 cut(s) 139, 270, 279, 369
BstNI CCWGG 2 cut(s) 299, 304
BstSCI CCNGG 6 cut(s) 282, 297, 302, 318, 332, 416
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 28, 502
BstX2I RGATCY 1 cut(s) 107
BstXI CCANNNNNNTGG 1 cut(s) 532
BstYI RGATCY 1 cut(s) 107
BstZI CGGCCG 1 cut(s) 395
Bsu36I CCTNAGG 2 cut(s) 63, 470
BsuRI GGCC 7 cut(s) 257, 282, 302, 308, 337, 397, 416
BtgI CCRYGG 1 cut(s) 274
BtrI CACGTC 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 391, 395, 414
CfoI GCGC 2 cut(s) 192, 206
Cfr10I RCCGGY 3 cut(s) 337, 393, 430
Cfr13I GGNCC 6 cut(s) 67, 231, 256, 306, 335, 407
Csp6I GTAC 1 cut(s) 379
CspCI CAANNNNNGTGG 2 cut(s) 256, 291
CviAII CATG 3 cut(s) 45, 484, 520
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 3 cut(s) 63, 464, 470
DpnI GATC 2 cut(s) 31, 109
DpnII GATC 2 cut(s) 29, 107
EaeI YGGCCR 3 cut(s) 280, 395, 414
EagI CGGCCG 1 cut(s) 395
EclXI CGGCCG 1 cut(s) 395
Eco130I CCWWGG 2 cut(s) 150, 309
Eco47I GGWCC 3 cut(s) 67, 231, 407
Eco47III AGCGCT 2 cut(s) 191, 205
Eco52I CGGCCG 1 cut(s) 395
Eco81I CCTNAGG 2 cut(s) 63, 470
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 2 cut(s) 297, 302
EcoT14I CCWWGG 2 cut(s) 150, 309
ErhI CCWWGG 2 cut(s) 150, 309
FaeI CATG 3 cut(s) 48, 487, 523
FaiI YATR 7 cut(s) 46, 57, 113, 345, 425, 485, 521
FaqI GGGAC 2 cut(s) 420, 433
FatI CATG 3 cut(s) 44, 483, 519
FauI CCCGC 1 cut(s) 356
FblI GTMKAC 1 cut(s) 506
Fnu4HI GCNGC 2 cut(s) 17, 491
Fsp4HI GCNGC 2 cut(s) 17, 491
FspBI CTAG 1 cut(s) 81
GlaI GCGC 2 cut(s) 191, 205
GluI GCNGC 2 cut(s) 17, 491
GsuI CTGGAG 1 cut(s) 119
HaeII RGCGCY 2 cut(s) 193, 207
HaeIII GGCC 7 cut(s) 257, 282, 302, 308, 337, 397, 416
HapII CCGG 8 cut(s) 283, 319, 333, 338, 382, 394, 417, 431
HhaI GCGC 2 cut(s) 192, 206
Hin1II CATG 3 cut(s) 48, 487, 523
Hin6I GCGC 2 cut(s) 190, 204
HinP1I GCGC 2 cut(s) 190, 204
HinfI GANTC 4 cut(s) 116, 121, 251, 454
HpaII CCGG 8 cut(s) 283, 319, 333, 338, 382, 394, 417, 431
HphI GGTGA 1 cut(s) 445
Hpy166II GTNNAC 2 cut(s) 295, 507
Hpy188I TCNGA 1 cut(s) 465
Hpy188III TCNNGA 2 cut(s) 136, 405
Hpy8I GTNNAC 2 cut(s) 295, 507
Hpy99I CGWCG 2 cut(s) 403, 406
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 378
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 2 cut(s) 55, 295
HpyF10VI GCNNNNNNNGC 4 cut(s) 139, 270, 279, 369
HpyF3I CTNAG 3 cut(s) 63, 464, 470
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 3 cut(s) 48, 487, 523
HspAI GCGC 2 cut(s) 190, 204
KroI GCCGGC 1 cut(s) 393
KroNI GCCGGC 1 cut(s) 395
Kzo9I GATC 2 cut(s) 29, 107
LmnI GCTCC 4 cut(s) 138, 360, 475, 487
Lsp1109I GCAGC 2 cut(s) 28, 502
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 81
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 95, 535
MalI GATC 2 cut(s) 31, 109
MbiI CCGCTC 1 cut(s) 363
MboI GATC 2 cut(s) 29, 107
MboII GAAGA 3 cut(s) 86, 196, 208
MflI RGATCY 1 cut(s) 107
MhlI GDGCHC 2 cut(s) 297, 374
MlyI GAGTC 2 cut(s) 110, 245
MnlI CCTC 6 cut(s) 72, 186, 280, 465, 492, 520
MroNI GCCGGC 1 cut(s) 393
MseI TTAA 2 cut(s) 6, 480
MslI CAYNNNNRTG 2 cut(s) 43, 93
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 8 cut(s) 283, 319, 333, 338, 382, 394, 417, 431
MspR9I CCNGG 6 cut(s) 284, 299, 304, 320, 334, 418
MvaI CCWGG 2 cut(s) 299, 304
MwoI GCNNNNNNNGC 4 cut(s) 139, 270, 279, 369
NaeI GCCGGC 1 cut(s) 395
NciI CCSGG 4 cut(s) 284, 320, 334, 418
NdeII GATC 2 cut(s) 29, 107
NgoMIV GCCGGC 1 cut(s) 393
NlaIII CATG 3 cut(s) 48, 487, 523
NlaIV GGNNCC 2 cut(s) 233, 408
NmeAIII GCCGAG 1 cut(s) 233
NmuCI GTSAC 1 cut(s) 95
OliI CACNNNNGTG 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 395
PfeI GAWTC 2 cut(s) 121, 454
PflFI GACNNNGTC 1 cut(s) 424
PkrI GCNGC 2 cut(s) 18, 492
PleI GAGTC 2 cut(s) 110, 245
PpsI GAGTC 2 cut(s) 110, 245
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 2 cut(s) 297, 302
PspGI CCWGG 2 cut(s) 297, 302
PspN4I GGNNCC 2 cut(s) 233, 408
PspPI GGNCC 6 cut(s) 67, 231, 256, 306, 335, 407
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 1 cut(s) 107
PsyI GACNNNGTC 1 cut(s) 424
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 43, 93
SaqAI TTAA 2 cut(s) 6, 480
SatI GCNGC 2 cut(s) 17, 491
Sau3AI GATC 2 cut(s) 29, 107
Sau96I GGNCC 6 cut(s) 67, 231, 256, 306, 335, 407
SchI GAGTC 2 cut(s) 110, 245
ScrFI CCNGG 6 cut(s) 284, 299, 304, 320, 334, 418
SduI GDGCHC 2 cut(s) 297, 374
SetI ASST 7 cut(s) 69, 82, 135, 294, 315, 480, 512
SfaNI GCATC 1 cut(s) 28
SgrAI CRCCGGYG 1 cut(s) 430
SinI GGWCC 3 cut(s) 67, 231, 407
SmiMI CAYNNNNRTG 2 cut(s) 43, 93
SsiI CCGC 4 cut(s) 14, 262, 363, 410
SspMI CTAG 1 cut(s) 81
StyD4I CCNGG 6 cut(s) 282, 297, 302, 318, 332, 416
StyI CCWWGG 2 cut(s) 150, 309
TaaI ACNGT 1 cut(s) 378
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 119, 368
TfiI GAWTC 2 cut(s) 121, 454
Tru1I TTAA 2 cut(s) 6, 480
Tru9I TTAA 2 cut(s) 6, 480
TseFI GTSAC 1 cut(s) 95
TseI GCWGC 2 cut(s) 16, 490
Tsp45I GTSAC 1 cut(s) 95
TspDTI ATGAA 1 cut(s) 33
TspGWI ACGGA 2 cut(s) 114, 447
Tth111I GACNNNGTC 1 cut(s) 424
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 3 cut(s) 67, 231, 407
XcmI CCANNNNNNNNNTGG 1 cut(s) 272
XmiI GTMKAC 1 cut(s) 506
XspI CTAG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.