RLG00000007569

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0012224
Physical Location & Seq
Forward (+)
18285267 .. 18285937
671 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007569

Sequence Viewer

Length: 573 bp
ATGTCGAACAAGTCACCCATTTTTCCGATGCCGGAGCCTCAACACTTCAGCGACTACGGCTTCGACCCCCAAATCGACTATTTCCAGGTCCTTGAAGAAGCTAGAAGGCACAAGCGTGACGGAACGAGATCCATAGACTCGATTCACTTCAAGCTCCAGAAGCCCATTTCCAAGGACGACCACTACTCCAAGAAGCCTCACAAGAAGAAGCGCTGGTGGAAAAGCGCTTTGCTTTTCTTCAAATGGGGCTGGGCTCACCACCACCACCACCACCACCATGACTCGGCCCACCGCCACAACCGCCGTGGTGGCCGGGAGGACGTGCACCAGGCCAGGGCCAAGGCTTTCCGGGCTTCCATTTCTGGGCCGGTTTATATAACAGAAAGCAGGAGCGGGTCGAGCACACCGTACCGGACGGCGAGCCGGCCGTCGTCGGGACCTCTGGCCGGGACTATGTCGCCGGTGAGTAAGGGAGAGATGGAGATTCCGTATCTGAGCCTGAGGGAGCTTAACATGGAGCAGCAACAGAGGGTGTCTACCTCATCAGCCATGCCCATTTACTTGGTTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

22.06

Weight (kDa)

10.03

Isoelectric Point (pI)

69.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06840
fragaria_vesca FvH4_4g18620
malus_domestica MD13G1165100.v1.1 MD13G1165200.v1.1 MD16G1164800.v1.1
prunus_persica Prupe.1G124100_v2.0.a1
pyrus_communis pycom13g14120 pycom13g14150 pycom16g13950
rosa_chinensis RchiOBHm_Chr4g0423321
rosa_laevigata RLG00000007569
rosa_multiflora Rmu_co8278673.1_g000001 Rmu_sc0005307.1_g000001
rosa_roxburghii Rroxscaffold_5G00365500
rosa_rugosa Rorug04G0186500
rosa_samantha Rh4AG245700 Rh4BG251100 Rh4CG259500
rosa_wichuraiana Rw4G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 393
AccI GTMKAC 1 cut(s) 536
AciI CCGC 3 cut(s) 292, 301, 393
AclWI GGATC 1 cut(s) 123
AcoI YGGCCR 3 cut(s) 310, 425, 444
AcuI CTGAAG 1 cut(s) 31
AfaI GTAC 1 cut(s) 410
AfeI AGCGCT 2 cut(s) 212, 226
AfiI CCNNNNNNNGG 5 cut(s) 283, 334, 363, 434, 446
AgsI TTSAA 3 cut(s) 95, 151, 241
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 3 cut(s) 84, 327, 332
AleI CACNNNNGTG 1 cut(s) 114
AluBI AGCT 3 cut(s) 101, 154, 508
AluI AGCT 3 cut(s) 101, 154, 508
Alw21I GWGCWC 2 cut(s) 327, 404
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 1 cut(s) 123
Aor51HI AGCGCT 2 cut(s) 212, 226
AoxI GGCC 7 cut(s) 285, 310, 330, 336, 365, 425, 444
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 1 cut(s) 520
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AspLEI GCGC 2 cut(s) 213, 227
AspS9I GGNCC 5 cut(s) 88, 286, 336, 365, 437
AsuC2I CCSGG 3 cut(s) 314, 350, 448
AsuHPI GGTGA 3 cut(s) 6, 248, 475
AvaII GGWCC 2 cut(s) 88, 437
AxyI CCTNAGG 1 cut(s) 500
BaeGI GKGCMC 1 cut(s) 327
BanII GRGCYC 1 cut(s) 256
Bbv12I GWGCWC 2 cut(s) 327, 404
BbvI GCAGC 1 cut(s) 532
BccI CCATC 1 cut(s) 472
BceAI ACGGC 4 cut(s) 73, 288, 412, 432
BciT130I CCWGG 3 cut(s) 86, 329, 334
BcnI CCSGG 3 cut(s) 314, 350, 448
BfaI CTAG 1 cut(s) 102
BfoI RGCGCY 2 cut(s) 214, 228
BglI GCCNNNNNGGC 1 cut(s) 309
BisI GCNGC 1 cut(s) 521
BlsI GCNGC 1 cut(s) 522
Bme1390I CCNGG 6 cut(s) 86, 314, 329, 334, 350, 448
Bme18I GGWCC 2 cut(s) 88, 437
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 5 cut(s) 88, 286, 336, 365, 437
BmiI GGNNCC 2 cut(s) 36, 438
BmrFI CCNGG 6 cut(s) 86, 314, 329, 334, 350, 448
BmsI GCATC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 140
BpuMI CCSGG 3 cut(s) 314, 350, 448
BsaJI CCNNGG 4 cut(s) 171, 304, 333, 339
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 4 cut(s) 170, 200, 473, 503
Bsc4I CCNNNNNNNGG 5 cut(s) 283, 334, 363, 434, 446
Bse118I RCCGGY 3 cut(s) 367, 423, 460
Bse21I CCTNAGG 1 cut(s) 500
BseBI CCWGG 3 cut(s) 86, 329, 334
BseDI CCNNGG 4 cut(s) 171, 304, 333, 339
BseLI CCNNNNNNNGG 5 cut(s) 283, 334, 363, 434, 446
BseMII CTCAG 2 cut(s) 485, 491
BseSI GKGCMC 1 cut(s) 327
BseX3I CGGCCG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 532
BseYI CCCAGC 1 cut(s) 249
Bsh1285I CGRYCG 1 cut(s) 428
BshFI GGCC 7 cut(s) 287, 312, 332, 338, 367, 427, 446
BsiEI CGRYCG 1 cut(s) 428
BsiHKAI GWGCWC 2 cut(s) 327, 404
BsiSI CCGG 8 cut(s) 32, 313, 349, 368, 412, 424, 447, 461
BslFI GGGAC 2 cut(s) 450, 463
BslI CCNNNNNNNGG 5 cut(s) 283, 334, 363, 434, 446
BsmFI GGGAC 2 cut(s) 450, 463
BsnI GGCC 7 cut(s) 287, 312, 332, 338, 367, 427, 446
Bsp1286I GDGCHC 3 cut(s) 256, 327, 404
Bsp143I GATC 1 cut(s) 128
BspACI CCGC 3 cut(s) 292, 301, 393
BspANI GGCC 7 cut(s) 287, 312, 332, 338, 367, 427, 446
BspCNI CTCAG 2 cut(s) 486, 492
BspLI GGNNCC 2 cut(s) 36, 438
BspPI GGATC 1 cut(s) 123
BsrBI CCGCTC 1 cut(s) 393
BsrFI RCCGGY 3 cut(s) 367, 423, 460
BssAI RCCGGY 3 cut(s) 367, 423, 460
BssECI CCNNGG 4 cut(s) 171, 304, 333, 339
BssMI GATC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 171, 339
Bst2UI CCWGG 3 cut(s) 86, 329, 334
Bst4CI ACNGT 1 cut(s) 408
BstC8I GCNNGC 2 cut(s) 421, 425
BstDEI CTNAG 2 cut(s) 494, 500
BstDSI CCRYGG 1 cut(s) 304
BstH2I RGCGCY 2 cut(s) 214, 228
BstHHI GCGC 2 cut(s) 213, 227
BstKTI GATC 1 cut(s) 131
BstMBI GATC 1 cut(s) 128
BstMCI CGRYCG 1 cut(s) 428
BstMWI GCNNNNNNNGC 6 cut(s) 57, 160, 300, 309, 350, 399
BstNI CCWGG 3 cut(s) 86, 329, 334
BstSCI CCNGG 6 cut(s) 84, 312, 327, 332, 348, 446
BstSLI GKGCMC 1 cut(s) 327
BstV1I GCAGC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 128
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 1 cut(s) 128
BstZI CGGCCG 1 cut(s) 425
Bsu36I CCTNAGG 1 cut(s) 500
BsuRI GGCC 7 cut(s) 287, 312, 332, 338, 367, 427, 446
BtgI CCRYGG 1 cut(s) 304
BtrI CACGTC 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 421, 425
CfoI GCGC 2 cut(s) 213, 227
Cfr10I RCCGGY 3 cut(s) 367, 423, 460
Cfr13I GGNCC 5 cut(s) 88, 286, 336, 365, 437
Csp6I GTAC 1 cut(s) 409
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 278, 514, 550
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 2 cut(s) 494, 500
DpnI GATC 1 cut(s) 130
DpnII GATC 1 cut(s) 128
EaeI YGGCCR 3 cut(s) 310, 425, 444
EagI CGGCCG 1 cut(s) 425
EclXI CGGCCG 1 cut(s) 425
Eco130I CCWWGG 2 cut(s) 171, 339
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 88, 437
Eco47III AGCGCT 2 cut(s) 212, 226
Eco52I CGGCCG 1 cut(s) 425
Eco57I CTGAAG 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 500
EcoO109I RGGNCCY 2 cut(s) 88, 437
EcoRII CCWGG 3 cut(s) 84, 327, 332
EcoT14I CCWWGG 2 cut(s) 171, 339
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 2 cut(s) 171, 339
FaeI CATG 3 cut(s) 281, 517, 553
FaiI YATR 7 cut(s) 134, 279, 375, 377, 455, 515, 551
FaqI GGGAC 2 cut(s) 450, 463
FatI CATG 3 cut(s) 277, 513, 549
FauI CCCGC 1 cut(s) 386
FblI GTMKAC 1 cut(s) 536
Fnu4HI GCNGC 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 521
FspBI CTAG 1 cut(s) 102
GlaI GCGC 2 cut(s) 212, 226
GluI GCNGC 1 cut(s) 521
GsaI CCCAGC 1 cut(s) 253
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 2 cut(s) 214, 228
HaeIII GGCC 7 cut(s) 287, 312, 332, 338, 367, 427, 446
HapII CCGG 8 cut(s) 32, 313, 349, 368, 412, 424, 447, 461
HhaI GCGC 2 cut(s) 213, 227
Hin1II CATG 3 cut(s) 281, 517, 553
Hin6I GCGC 2 cut(s) 211, 225
HinP1I GCGC 2 cut(s) 211, 225
HinfI GANTC 4 cut(s) 137, 142, 281, 484
HpaII CCGG 8 cut(s) 32, 313, 349, 368, 412, 424, 447, 461
HphI GGTGA 3 cut(s) 6, 248, 475
Hpy166II GTNNAC 2 cut(s) 325, 537
Hpy188I TCNGA 2 cut(s) 27, 495
Hpy188III TCNNGA 2 cut(s) 157, 435
Hpy8I GTNNAC 2 cut(s) 325, 537
Hpy99I CGWCG 2 cut(s) 433, 436
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 6 cut(s) 57, 160, 300, 309, 350, 399
HpyF3I CTNAG 2 cut(s) 494, 500
HpySE526I ACGT 1 cut(s) 321
Hsp92II CATG 3 cut(s) 281, 517, 553
HspAI GCGC 2 cut(s) 211, 225
KroI GCCGGC 1 cut(s) 423
KroNI GCCGGC 1 cut(s) 425
Kzo9I GATC 1 cut(s) 128
LmnI GCTCC 5 cut(s) 34, 159, 390, 505, 517
Lsp1109I GCAGC 1 cut(s) 532
LweI GCATC 1 cut(s) 18
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 3 cut(s) 12, 116, 565
MalI GATC 1 cut(s) 130
MbiI CCGCTC 1 cut(s) 393
MboI GATC 1 cut(s) 128
MboII GAAGA 3 cut(s) 107, 217, 229
MflI RGATCY 1 cut(s) 128
MhlI GDGCHC 3 cut(s) 256, 327, 404
MlyI GAGTC 2 cut(s) 131, 275
MnlI CCTC 7 cut(s) 48, 207, 310, 450, 495, 522, 550
MroNI GCCGGC 1 cut(s) 423
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 2 cut(s) 114, 276
MspI CCGG 8 cut(s) 32, 313, 349, 368, 412, 424, 447, 461
MspR9I CCNGG 6 cut(s) 86, 314, 329, 334, 350, 448
MvaI CCWGG 3 cut(s) 86, 329, 334
MwoI GCNNNNNNNGC 6 cut(s) 57, 160, 300, 309, 350, 399
NaeI GCCGGC 1 cut(s) 425
NciI CCSGG 3 cut(s) 314, 350, 448
NdeII GATC 1 cut(s) 128
NgoMIV GCCGGC 1 cut(s) 423
NlaIII CATG 3 cut(s) 281, 517, 553
NlaIV GGNNCC 2 cut(s) 36, 438
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 2 cut(s) 12, 116
OliI CACNNNNGTG 1 cut(s) 114
PcsI WCGNNNNNNNCGW 1 cut(s) 404
PdiI GCCGGC 1 cut(s) 425
PfeI GAWTC 2 cut(s) 142, 484
PflFI GACNNNGTC 1 cut(s) 454
PkrI GCNGC 1 cut(s) 522
PleI GAGTC 2 cut(s) 131, 275
PpsI GAGTC 2 cut(s) 131, 275
PpuMI RGGWCCY 2 cut(s) 88, 437
Psp5II RGGWCCY 2 cut(s) 88, 437
Psp6I CCWGG 3 cut(s) 84, 327, 332
PspFI CCCAGC 1 cut(s) 249
PspGI CCWGG 3 cut(s) 84, 327, 332
PspN4I GGNNCC 2 cut(s) 36, 438
PspPI GGNCC 5 cut(s) 88, 286, 336, 365, 437
PspPPI RGGWCCY 2 cut(s) 88, 437
PsuI RGATCY 1 cut(s) 128
PsyI GACNNNGTC 1 cut(s) 454
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 2 cut(s) 114, 276
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 1 cut(s) 521
Sau3AI GATC 1 cut(s) 128
Sau96I GGNCC 5 cut(s) 88, 286, 336, 365, 437
SchI GAGTC 2 cut(s) 131, 275
ScrFI CCNGG 6 cut(s) 86, 314, 329, 334, 350, 448
SduI GDGCHC 3 cut(s) 256, 327, 404
SetI ASST 7 cut(s) 90, 103, 156, 324, 442, 510, 542
SfaNI GCATC 1 cut(s) 18
SgrAI CRCCGGYG 1 cut(s) 460
SinI GGWCC 2 cut(s) 88, 437
SmiMI CAYNNNNRTG 2 cut(s) 114, 276
SsiI CCGC 3 cut(s) 292, 301, 393
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 6 cut(s) 84, 312, 327, 332, 348, 446
StyI CCWWGG 2 cut(s) 171, 339
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 324
TaqI TCGA 5 cut(s) 5, 63, 75, 140, 398
TfiI GAWTC 2 cut(s) 142, 484
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseFI GTSAC 2 cut(s) 12, 116
TseI GCWGC 1 cut(s) 520
Tsp45I GTSAC 2 cut(s) 12, 116
TspGWI ACGGA 2 cut(s) 135, 477
Tth111I GACNNNGTC 1 cut(s) 454
VneI GTGCAC 1 cut(s) 323
VpaK11BI GGWCC 2 cut(s) 88, 437
XcmI CCANNNNNNNNNTGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 536
XspI CTAG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.