pycom13g14150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012224
Physical Location & Seq
Forward (+)
10127604 .. 10128496
893 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g14150.1

Sequence Viewer

Length: 792 bp
ATGTTTAATACAGATGGAACTTGGAACGTGCGCGTAGCATTCAGTGGGGTTCCAATACCCAAAGGCCATTACTTCCCCTTCGCCCCAAAACCTCCCACTCTTCCCACTCCCCCAACTTCCCTTCTTCTCCCTCCCTCCCTCCCTCCCTACCCCACTCTGCTTTCCCACAAAGAAGGAACCCCAAAAGCACTGAAAAAACAGCCAAAAAAACCAGAGAGAAAAATGTCCAACAAGTCACCAATCTTTCCGATGCCACAACCCCAACACTTCAGCGACTACGGCTTCGACCCCCAAGTCGACTACTTTCAGGTTTTGGAGGAAGCAAGGAGGCACAAGCGGGAGACGACGAGATCCATAGACTCCAAACACTTCAAGCTCCAAAAGCGCATCTCAAAAGACGACTCCAGAAAGCCCCACCACAACAAAACCAAGAAGAAGCGCTGGTGGAAAAGCGCTCTGCTTTTCTTCAAATGGAACAAGCTGACACCTCACCACCACCACCACCACGACGTCTCCACCATCCGCGGCGGCGATGAAGATGTTCACCAGGCCAGGGCCAAAGCCTTCCGGGGATCGATTTCTGAGCCGATTTATATCACTGAGAGCAGAAGCGGGTTGTGCACTCCTTGCCTGAGTAATAGCTGGCCGTCGTCTAGGCCCCTTGCCGGGACTATGTTTCCGGCGAGTAAGGATGAGATGGGCATTCCTTACCTGAACCTGAGGGAGCTTAACATGGAGCAGCAGCGACAGAGGAACTCCACCTCTGCCGTGCCTATATATTTGGTTACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

264

Amino Acids

30.29

Weight (kDa)

10.05

Isoelectric Point (pI)

62.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012224)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G06840
fragaria_vesca FvH4_4g18620
malus_domestica MD13G1165100.v1.1 MD13G1165200.v1.1 MD16G1164800.v1.1
prunus_persica Prupe.1G124100_v2.0.a1
pyrus_communis pycom13g14120 pycom13g14150 pycom16g13950
rosa_chinensis RchiOBHm_Chr4g0423321
rosa_laevigata RLG00000007569
rosa_multiflora Rmu_co8278673.1_g000001 Rmu_sc0005307.1_g000001
rosa_roxburghii Rroxscaffold_5G00365500
rosa_rugosa Rorug04G0186500
rosa_samantha Rh4AG245700 Rh4BG251100 Rh4CG259500
rosa_wichuraiana Rw4G021110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 293
AatII GACGTC 1 cut(s) 513
AccI GTMKAC 1 cut(s) 297
AccII CGCG 2 cut(s) 33, 525
AciI CCGC 5 cut(s) 337, 523, 525, 528, 612
AclWI GGATC 2 cut(s) 345, 580
AcoI YGGCCR 1 cut(s) 644
AcuI CTGAAG 1 cut(s) 253
AcyI GRCGYC 1 cut(s) 510
AfeI AGCGCT 2 cut(s) 440, 454
AfiI CCNNNNNNNGG 3 cut(s) 553, 665, 666
AgsI TTSAA 2 cut(s) 373, 469
AjnI CCWGG 2 cut(s) 546, 551
AluBI AGCT 4 cut(s) 376, 481, 642, 727
AluI AGCT 4 cut(s) 376, 481, 642, 727
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 335, 517
Alw44I GTGCAC 1 cut(s) 619
AlwI GGATC 2 cut(s) 345, 580
Aor51HI AGCGCT 2 cut(s) 440, 454
AoxI GGCC 5 cut(s) 64, 549, 555, 644, 656
ApaLI GTGCAC 1 cut(s) 619
ApeKI GCWGC 2 cut(s) 739, 742
ArsI GACNNNNNNTTYG 2 cut(s) 266, 298
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 4 cut(s) 33, 387, 441, 455
AspS9I GGNCC 2 cut(s) 555, 657
AsuC2I CCSGG 2 cut(s) 569, 667
AsuHPI GGTGA 3 cut(s) 228, 482, 536
AxyI CCTNAGG 1 cut(s) 719
BaeGI GKGCMC 1 cut(s) 623
Bbv12I GWGCWC 1 cut(s) 623
BbvI GCAGC 2 cut(s) 751, 754
BccI CCATC 3 cut(s) 8, 527, 691
BceAI ACGGC 3 cut(s) 295, 631, 752
BciT130I CCWGG 2 cut(s) 548, 553
BcnI CCSGG 2 cut(s) 569, 667
BcoDI GTCTC 2 cut(s) 335, 517
BfaI CTAG 1 cut(s) 654
BfoI RGCGCY 2 cut(s) 442, 456
BisI GCNGC 4 cut(s) 526, 529, 740, 743
BlsI GCNGC 4 cut(s) 527, 530, 741, 744
Bme1390I CCNGG 4 cut(s) 548, 553, 569, 667
BmgT120I GGNCC 2 cut(s) 555, 657
BmiI GGNNCC 3 cut(s) 51, 178, 659
BmrFI CCNGG 4 cut(s) 548, 553, 569, 667
BmsI GCATC 2 cut(s) 240, 396
BpmI CTGGAG 1 cut(s) 388
BpuMI CCSGG 2 cut(s) 569, 667
Bsa29I ATCGAT 1 cut(s) 575
BsaBI GATNNNNATC 1 cut(s) 593
BsaHI GRCGYC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 523, 552, 568
BsaXI ACNNNNNCTCC 2 cut(s) 497, 527
Bsc4I CCNNNNNNNGG 3 cut(s) 553, 665, 666
Bse21I CCTNAGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 593
BseBI CCWGG 2 cut(s) 548, 553
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 3 cut(s) 523, 552, 568
BseGI GGATG 2 cut(s) 519, 697
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 3 cut(s) 553, 665, 666
BseMII CTCAG 4 cut(s) 573, 591, 623, 710
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 2 cut(s) 751, 754
Bsh1236I CGCG 2 cut(s) 33, 525
BshFI GGCC 5 cut(s) 66, 551, 557, 646, 658
BshVI ATCGAT 1 cut(s) 575
BsiHKAI GWGCWC 1 cut(s) 623
BsiSI CCGG 3 cut(s) 568, 666, 680
BslFI GGGAC 1 cut(s) 682
BslI CCNNNNNNNGG 3 cut(s) 553, 665, 666
BsmAI GTCTC 2 cut(s) 335, 517
BsmBI CGTCTC 2 cut(s) 335, 517
BsmFI GGGAC 1 cut(s) 682
BsmI GAATGC 2 cut(s) 38, 702
BsnI GGCC 5 cut(s) 66, 551, 557, 646, 658
Bsp1286I GDGCHC 1 cut(s) 623
Bsp143I GATC 2 cut(s) 350, 572
BspACI CCGC 5 cut(s) 337, 523, 525, 528, 612
BspANI GGCC 5 cut(s) 66, 551, 557, 646, 658
BspCNI CTCAG 4 cut(s) 574, 592, 624, 711
BspDI ATCGAT 1 cut(s) 575
BspFNI CGCG 2 cut(s) 33, 525
BspLI GGNNCC 3 cut(s) 51, 178, 659
BspPI GGATC 2 cut(s) 345, 580
BssECI CCNNGG 3 cut(s) 523, 552, 568
BssMI GATC 2 cut(s) 350, 572
BssNI GRCGYC 1 cut(s) 510
Bst2UI CCWGG 2 cut(s) 548, 553
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 510
BstAPI GCANNNNNTGC 1 cut(s) 627
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 4 cut(s) 582, 600, 632, 719
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 519, 697
BstFNI CGCG 2 cut(s) 33, 525
BstH2I RGCGCY 2 cut(s) 442, 456
BstHHI GCGC 4 cut(s) 33, 387, 441, 455
BstKTI GATC 2 cut(s) 353, 575
BstMAI GTCTC 2 cut(s) 335, 517
BstMBI GATC 2 cut(s) 350, 572
BstMWI GCNNNNNNNGC 4 cut(s) 279, 382, 618, 627
BstNI CCWGG 2 cut(s) 548, 553
BstSCI CCNGG 4 cut(s) 546, 551, 567, 665
BstSLI GKGCMC 1 cut(s) 623
BstUI CGCG 2 cut(s) 33, 525
BstV1I GCAGC 2 cut(s) 751, 754
BstX2I RGATCY 1 cut(s) 350
BstYI RGATCY 1 cut(s) 350
Bsu15I ATCGAT 1 cut(s) 575
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 5 cut(s) 66, 551, 557, 646, 658
BsuTUI ATCGAT 1 cut(s) 575
BtgI CCRYGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 546
BtsCI GGATG 2 cut(s) 519, 697
BtsIMutI CAGTG 3 cut(s) 49, 188, 597
Cac8I GCNNGC 1 cut(s) 644
CfoI GCGC 4 cut(s) 33, 387, 441, 455
Cfr13I GGNCC 2 cut(s) 555, 657
Cfr42I CCGCGG 1 cut(s) 526
ClaI ATCGAT 1 cut(s) 575
CviAII CATG 1 cut(s) 733
DdeI CTNAG 4 cut(s) 582, 600, 632, 719
DpnI GATC 2 cut(s) 352, 574
DpnII GATC 2 cut(s) 350, 572
DrdI GACNNNNNNGTC 1 cut(s) 293
DseDI GACNNNNNNGTC 1 cut(s) 293
EaeI YGGCCR 1 cut(s) 644
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco47III AGCGCT 2 cut(s) 440, 454
Eco57I CTGAAG 1 cut(s) 253
Eco81I CCTNAGG 1 cut(s) 719
EcoO109I RGGNCCY 1 cut(s) 657
EcoRII CCWGG 2 cut(s) 546, 551
Esp3I CGTCTC 2 cut(s) 335, 517
FaeI CATG 1 cut(s) 736
FaiI YATR 6 cut(s) 356, 594, 674, 734, 776, 778
FaqI GGGAC 1 cut(s) 682
FatI CATG 1 cut(s) 732
FauI CCCGC 2 cut(s) 330, 605
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 4 cut(s) 526, 529, 740, 743
FokI GGATG 2 cut(s) 506, 704
Fsp4HI GCNGC 4 cut(s) 526, 529, 740, 743
FspBI CTAG 1 cut(s) 654
GlaI GCGC 4 cut(s) 32, 386, 440, 454
GluI GCNGC 4 cut(s) 526, 529, 740, 743
GsuI CTGGAG 1 cut(s) 388
HaeII RGCGCY 2 cut(s) 442, 456
HaeIII GGCC 5 cut(s) 66, 551, 557, 646, 658
HapII CCGG 3 cut(s) 568, 666, 680
HhaI GCGC 4 cut(s) 33, 387, 441, 455
Hin1I GRCGYC 1 cut(s) 510
Hin1II CATG 1 cut(s) 736
Hin6I GCGC 4 cut(s) 31, 385, 439, 453
HinP1I GCGC 4 cut(s) 31, 385, 439, 453
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 2 cut(s) 359, 401
HpaII CCGG 3 cut(s) 568, 666, 680
HphI GGTGA 3 cut(s) 228, 482, 536
Hpy166II GTNNAC 3 cut(s) 298, 544, 621
Hpy188I TCNGA 2 cut(s) 249, 583
Hpy188III TCNNGA 1 cut(s) 405
Hpy8I GTNNAC 3 cut(s) 298, 544, 621
Hpy99I CGWCG 3 cut(s) 349, 512, 652
HpyAV CCTTC 4 cut(s) 88, 131, 167, 574
HpyCH4IV ACGT 2 cut(s) 27, 510
HpyCH4V TGCA 1 cut(s) 621
HpyF10VI GCNNNNNNNGC 4 cut(s) 279, 382, 618, 627
HpyF3I CTNAG 4 cut(s) 582, 600, 632, 719
HpySE526I ACGT 2 cut(s) 27, 510
Hsp92I GRCGYC 1 cut(s) 510
Hsp92II CATG 1 cut(s) 736
HspAI GCGC 4 cut(s) 31, 385, 439, 453
KspI CCGCGG 1 cut(s) 526
Kzo9I GATC 2 cut(s) 350, 572
LmnI GCTCC 3 cut(s) 381, 724, 736
Lsp1109I GCAGC 2 cut(s) 751, 754
LweI GCATC 2 cut(s) 240, 396
MaeI CTAG 1 cut(s) 654
MaeII ACGT 2 cut(s) 27, 510
MaeIII GTNAC 2 cut(s) 234, 784
MalI GATC 2 cut(s) 352, 574
MboI GATC 2 cut(s) 350, 572
MboII GAAGA 5 cut(s) 92, 116, 445, 457, 548
MflI RGATCY 1 cut(s) 350
MhlI GDGCHC 1 cut(s) 623
MlyI GAGTC 2 cut(s) 353, 395
MmeI TCCRAC 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 3 cut(s) 6, 729, 790
MspA1I CMGCKG 1 cut(s) 525
MspI CCGG 3 cut(s) 568, 666, 680
MspR9I CCNGG 4 cut(s) 548, 553, 569, 667
Mva1269I GAATGC 2 cut(s) 38, 702
MvaI CCWGG 2 cut(s) 548, 553
MvnI CGCG 2 cut(s) 33, 525
MwoI GCNNNNNNNGC 4 cut(s) 279, 382, 618, 627
NciI CCSGG 2 cut(s) 569, 667
NdeII GATC 2 cut(s) 350, 572
NlaIII CATG 1 cut(s) 736
NlaIV GGNNCC 3 cut(s) 51, 178, 659
NmuCI GTSAC 1 cut(s) 234
PctI GAATGC 2 cut(s) 38, 702
PdmI GAANNNNTTC 1 cut(s) 540
PkrI GCNGC 4 cut(s) 527, 530, 741, 744
PleI GAGTC 2 cut(s) 353, 395
PpsI GAGTC 2 cut(s) 353, 395
Psp6I CCWGG 2 cut(s) 546, 551
PspGI CCWGG 2 cut(s) 546, 551
PspN4I GGNNCC 3 cut(s) 51, 178, 659
PspPI GGNCC 2 cut(s) 555, 657
PsuI RGATCY 1 cut(s) 350
SacII CCGCGG 1 cut(s) 526
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 6, 729, 790
SatI GCNGC 4 cut(s) 526, 529, 740, 743
Sau3AI GATC 2 cut(s) 350, 572
Sau96I GGNCC 2 cut(s) 555, 657
SchI GAGTC 2 cut(s) 353, 395
ScrFI CCNGG 4 cut(s) 548, 553, 569, 667
SduI GDGCHC 1 cut(s) 623
SfaNI GCATC 2 cut(s) 240, 396
Sfr303I CCGCGG 1 cut(s) 526
SgrBI CCGCGG 1 cut(s) 526
SsiI CCGC 5 cut(s) 337, 523, 525, 528, 612
SspMI CTAG 1 cut(s) 654
StyD4I CCNGG 4 cut(s) 546, 551, 567, 665
TaiI ACGT 2 cut(s) 30, 513
TaqI TCGA 3 cut(s) 285, 297, 575
TauI GCSGC 2 cut(s) 528, 531
Tru1I TTAA 3 cut(s) 6, 729, 790
Tru9I TTAA 3 cut(s) 6, 729, 790
TscAI CASTG 3 cut(s) 49, 195, 604
TseFI GTSAC 1 cut(s) 234
TseI GCWGC 2 cut(s) 739, 742
Tsp45I GTSAC 1 cut(s) 234
TspDTI ATGAA 1 cut(s) 549
TspRI CASTG 3 cut(s) 49, 195, 604
VneI GTGCAC 1 cut(s) 619
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 1 cut(s) 654
ZraI GACGTC 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.