AT3G07150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014531
Physical Location & Seq
Reverse (-)
2263806 .. 2264721
916 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07150.1

Sequence Viewer

Length: 600 bp
ATGGCGGGAGACTCAGGTCGGAGGAAGATCAAACTTTTCTGTCCCTCGGTATCGAAGATTGTGGAGTGGGTTGCTTGGAACGACGAGAAACTAGACTTTAGAGCCATAGCCGCAGCGTTTGGGCTCGAACCATCAACGGTGAAGCTCAATGGTCACTTCATAAGCAGAGGTTTTGATCTAGTTGCCACTTGTGTGACGTGGCAGTCTTTGCTCACTTTCTTCTCTGCTAGAGGCTTGTCTACTGGAAAACACGAAGCCGATGCTCTGCTAGTTCACGGCAAGCTCTCTAAACTCGGTACTAAAAGAGCACGCTCGGATCCTCTGGAGGACTTCGCCTGCAATGATCTTGGTCTAATCAAAACGAAGAAGTTGAAAGATAAGTGCTCAGTTGGAGAATCACTGATCTCTGGATGCAACAAGAGAAAGCTGTTGTCTGAAGATTCACACCCACTCAAGAAACTAAAACTCAACATGGATGATAGTTTCGGAGGGAGCGGATCTAAAACGCCATTGAAATGCAGTTTCATGAGTGATAATGGTCTGAAGAGGACAAGAGAAGATGATATGATTGCTTCTGCATCTTGTAAGAAGATAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

21.84

Weight (kDa)

9.49

Isoelectric Point (pI)

25.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 239
AciI CCGC 3 cut(s) 5, 111, 495
AclWI GGATC 3 cut(s) 311, 324, 505
AcuI CTGAAG 2 cut(s) 456, 563
AfaI GTAC 1 cut(s) 298
AgsI TTSAA 2 cut(s) 373, 514
AjiI CACGTC 1 cut(s) 198
AleI CACNNNNGTG 1 cut(s) 191
AluBI AGCT 3 cut(s) 145, 283, 427
AluI AGCT 3 cut(s) 145, 283, 427
Alw21I GWGCWC 2 cut(s) 310, 386
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 3 cut(s) 311, 324, 505
ApeKI GCWGC 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 151
BamHI GGATCC 1 cut(s) 316
BanII GRGCYC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 310, 386
BbvI GCAGC 1 cut(s) 125
BccI CCATC 1 cut(s) 139
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 242, 276
BcoDI GTCTC 1 cut(s) 3
BfaI CTAG 4 cut(s) 92, 179, 228, 269
BisI GCNGC 2 cut(s) 111, 114
BlsI GCNGC 2 cut(s) 112, 115
BmgBI CACGTC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 318
BmsI GCATC 3 cut(s) 250, 401, 587
BoxI GACNNNNGTC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 344
BpuEI CTTGAG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 247
Bse3DI GCAATG 1 cut(s) 346
BseDI CCNNGG 1 cut(s) 45
BseGI GGATG 2 cut(s) 416, 481
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 2 cut(s) 27, 399
BseNI ACTGG 1 cut(s) 247
BseXI GCAGC 1 cut(s) 125
BsiHKAI GWGCWC 2 cut(s) 310, 386
BslFI GGGAC 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 3
BsmFI GGGAC 1 cut(s) 27
Bsp1286I GDGCHC 3 cut(s) 126, 310, 386
Bsp143I GATC 6 cut(s) 27, 175, 316, 343, 402, 497
BspACI CCGC 3 cut(s) 5, 111, 495
BspCNI CTCAG 2 cut(s) 26, 398
BspHI TCATGA 1 cut(s) 525
BspLI GGNNCC 1 cut(s) 318
BspPI GGATC 3 cut(s) 311, 324, 505
BsrBI CCGCTC 1 cut(s) 495
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 1 cut(s) 247
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 6 cut(s) 27, 175, 316, 343, 402, 497
Bst4CI ACNGT 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 539
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 281, 310, 337
BstDEI CTNAG 2 cut(s) 13, 385
BstF5I GGATG 2 cut(s) 416, 481
BstKTI GATC 6 cut(s) 30, 178, 319, 346, 405, 500
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 6 cut(s) 27, 175, 316, 343, 402, 497
BstMWI GCNNNNNNNGC 2 cut(s) 110, 208
BstPAI GACNNNNGTC 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 125
BstX2I RGATCY 2 cut(s) 316, 497
BstYI RGATCY 2 cut(s) 316, 497
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 2 cut(s) 416, 481
BtsIMutI CAGTG 1 cut(s) 398
Cac8I GCNNGC 3 cut(s) 281, 310, 337
CciI TCATGA 1 cut(s) 525
Csp6I GTAC 1 cut(s) 297
CviAII CATG 2 cut(s) 472, 526
CviJI RGCY 8 cut(s) 104, 110, 124, 145, 234, 257, 283, 427
CviKI_1 RGCY 8 cut(s) 104, 110, 124, 145, 234, 257, 283, 427
CviQI GTAC 1 cut(s) 297
DdeI CTNAG 2 cut(s) 13, 385
DpnI GATC 6 cut(s) 29, 177, 318, 345, 404, 499
DpnII GATC 6 cut(s) 27, 175, 316, 343, 402, 497
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 539
EarI CTCTTC 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 126
Eco57I CTGAAG 2 cut(s) 456, 563
EcoT38I GRGCYC 1 cut(s) 126
FaeI CATG 2 cut(s) 475, 529
FaiI YATR 5 cut(s) 107, 161, 473, 527, 566
FaqI GGGAC 1 cut(s) 27
FatI CATG 2 cut(s) 471, 525
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 111, 114
FokI GGATG 2 cut(s) 423, 488
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 111, 114
FspBI CTAG 4 cut(s) 92, 179, 228, 269
GluI GCNGC 2 cut(s) 111, 114
GsuI CTGGAG 1 cut(s) 344
Hin1II CATG 2 cut(s) 475, 529
HinfI GANTC 3 cut(s) 11, 395, 440
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 2 cut(s) 240, 274
Hpy188I TCNGA 5 cut(s) 21, 316, 436, 488, 543
Hpy188III TCNNGA 4 cut(s) 323, 408, 454, 526
Hpy8I GTNNAC 2 cut(s) 240, 274
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 139
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 4 cut(s) 339, 414, 519, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 208
HpyF3I CTNAG 2 cut(s) 13, 385
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 2 cut(s) 475, 529
Kzo9I GATC 6 cut(s) 27, 175, 316, 343, 402, 497
LmnI GCTCC 1 cut(s) 492
LpnPI CCDG 4 cut(s) 228, 308, 349, 393
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 3 cut(s) 250, 401, 587
MaeI CTAG 4 cut(s) 92, 179, 228, 269
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 152, 193
MalI GATC 6 cut(s) 29, 177, 318, 345, 404, 499
MbiI CCGCTC 1 cut(s) 495
MboI GATC 6 cut(s) 27, 175, 316, 343, 402, 497
MboII GAAGA 7 cut(s) 37, 67, 211, 376, 449, 556, 569
MflI RGATCY 2 cut(s) 316, 497
MhlI GDGCHC 3 cut(s) 126, 310, 386
MlyI GAGTC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 370
MnlI CCTC 8 cut(s) 15, 55, 161, 224, 319, 330, 482, 540
MslI CAYNNNNRTG 2 cut(s) 191, 514
MwoI GCNNNNNNNGC 2 cut(s) 110, 208
NdeII GATC 6 cut(s) 27, 175, 316, 343, 402, 497
NlaIII CATG 2 cut(s) 475, 529
NlaIV GGNNCC 1 cut(s) 318
NmuCI GTSAC 2 cut(s) 152, 193
OliI CACNNNNGTG 1 cut(s) 191
PagI TCATGA 1 cut(s) 525
PfeI GAWTC 2 cut(s) 395, 440
PkrI GCNGC 2 cut(s) 112, 115
PleI GAGTC 1 cut(s) 5
PpsI GAGTC 1 cut(s) 5
PshAI GACNNNNGTC 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 318
PsuI RGATCY 2 cut(s) 316, 497
RsaI GTAC 1 cut(s) 298
RsaNI GTAC 1 cut(s) 297
RseI CAYNNNNRTG 2 cut(s) 191, 514
SatI GCNGC 2 cut(s) 111, 114
Sau3AI GATC 6 cut(s) 27, 175, 316, 343, 402, 497
SchI GAGTC 1 cut(s) 5
SduI GDGCHC 3 cut(s) 126, 310, 386
SetI ASST 6 cut(s) 19, 147, 172, 200, 285, 429
SfaNI GCATC 3 cut(s) 250, 401, 587
SmiMI CAYNNNNRTG 2 cut(s) 191, 514
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SsiI CCGC 3 cut(s) 5, 111, 495
SspMI CTAG 4 cut(s) 92, 179, 228, 269
TaaI ACNGT 1 cut(s) 139
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 53, 126
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 2 cut(s) 395, 440
TscAI CASTG 1 cut(s) 405
TseFI GTSAC 2 cut(s) 152, 193
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 152, 193
TspDTI ATGAA 2 cut(s) 148, 514
TspRI CASTG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 239
XspI CTAG 4 cut(s) 92, 179, 228, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.