pycom05g16000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0014531
Physical Location & Seq
Forward (+)
19425159 .. 19426407
1249 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g16000.2

Sequence Viewer

Length: 693 bp
ATGTTTTTTGACCCCCGACCCGCTCTAACAAAGAAAGAAACTTTAGACACTTCCGGAAACCGTTGGAAGCCAACGCAGTTCTACCACTCTCTCCGACTGAAAAACTCTCTAAGAAACAGAGAAAATAAGAAAAGGAAGCAACTTCTTGTTAGAGAGATGTCAGAAAACAGAGTCAGGACGATAAAGCTTCGCTGCCCATCGGCTGCGAAAACGGCGTCATTCGCTGCACCGGAGGAGCAGAAGCTGGACCTGGGCTCCATAGCCAGAGCGTTCGGGGTGGACCCACAAACGCTGAAGCTCAACGGACACTTCATCGGCAGAGGCTCCGACCTCATCGCTTCCTCGGTCACCTGGAAGTCCCTCCTCTCTTTCTTCTCCACCAAACGACTCCCCACGGGGGAAGACGACGCCAACCCCATCGTCGTCGACGGCAAGCTCTGCAGAGCTGGCACCAAGAGAGTTGGGTGTGACGTTGTTGATGATAGCAGTGGAAGAGAGGCAGAGTTGGAAGATGGGGAATTTTTGGGGATGAAGAGTAAAAAGATGAAGACGACTAGCAATGTTGGAATTTGCTCCAAGAGGAAGCAATTGTTGGAGGATGTGAAGTTGCTCAAAAAGTTGAAAATTAGTGAAACCAACCCAGATATTCAAGGAAGCAGTAATGGACTGTGCAAGAGCATCGCGAGCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.56

Weight (kDa)

9.81

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccBSI CCGCTC 1 cut(s) 23
AccI GTMKAC 1 cut(s) 426
AccII CGCG 1 cut(s) 683
AccIII TCCGGA 1 cut(s) 53
AciI CCGC 1 cut(s) 21
AcsI RAATTY 2 cut(s) 518, 567
AcuI CTGAAG 1 cut(s) 314
AcyI GRCGYC 2 cut(s) 215, 408
AfiI CCNNNNNNNGG 1 cut(s) 397
AgsI TTSAA 2 cut(s) 622, 650
AjnI CCWGG 2 cut(s) 249, 350
AjuI GAANNNNNNNTTGG 2 cut(s) 575, 607
AluBI AGCT 5 cut(s) 187, 244, 298, 436, 446
AluI AGCT 5 cut(s) 187, 244, 298, 436, 446
AlwNI CAGNNNCTG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 53
ApeKI GCWGC 3 cut(s) 192, 203, 224
ApoI RAATTY 2 cut(s) 518, 567
ArsI GACNNNNNNTTYG 2 cut(s) 200, 232
AspS9I GGNCC 2 cut(s) 247, 280
AsuHPI GGTGA 1 cut(s) 340
AvaII GGWCC 2 cut(s) 247, 280
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 257
BbsI GAAGAC 2 cut(s) 408, 554
BbvI GCAGC 3 cut(s) 179, 190, 211
BccI CCATC 3 cut(s) 205, 425, 506
BceAI ACGGC 2 cut(s) 228, 445
BcgI CGANNNNNNTGC 1 cut(s) 661
BciT130I CCWGG 2 cut(s) 251, 352
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 1 cut(s) 439
BisI GCNGC 3 cut(s) 193, 204, 225
BlsI GCNGC 3 cut(s) 194, 205, 226
Bme1390I CCNGG 2 cut(s) 251, 352
Bme18I GGWCC 2 cut(s) 247, 280
BmgT120I GGNCC 2 cut(s) 247, 280
BmiI GGNNCC 4 cut(s) 256, 282, 325, 451
BmrFI CCNGG 2 cut(s) 251, 352
BmsI GCATC 1 cut(s) 687
BpiI GAAGAC 2 cut(s) 408, 554
BsaHI GRCGYC 2 cut(s) 215, 408
BsaJI CCNNGG 3 cut(s) 250, 342, 393
BsaWI WCCGGW 2 cut(s) 53, 229
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 565
BseAI TCCGGA 1 cut(s) 53
BseBI CCWGG 2 cut(s) 251, 352
BseDI CCNNGG 3 cut(s) 250, 342, 393
BseGI GGATG 2 cut(s) 534, 604
BseLI CCNNNNNNNGG 1 cut(s) 397
BseMI GCAATG 1 cut(s) 565
BseRI GAGGAG 2 cut(s) 248, 353
BseXI GCAGC 3 cut(s) 179, 190, 211
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 683
BshNI GGYRCC 1 cut(s) 449
BsiSI CCGG 2 cut(s) 54, 230
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 343
Bsp1286I GDGCHC 1 cut(s) 257
Bsp13I TCCGGA 1 cut(s) 53
Bsp68I TCGCGA 1 cut(s) 683
BspACI CCGC 1 cut(s) 21
BspEI TCCGGA 1 cut(s) 53
BspFNI CGCG 1 cut(s) 683
BspLI GGNNCC 4 cut(s) 256, 282, 325, 451
BspMAI CTGCAG 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 449
BsrBI CCGCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 565
BssECI CCNNGG 3 cut(s) 250, 342, 393
BssNI GRCGYC 2 cut(s) 215, 408
Bst2UI CCWGG 2 cut(s) 251, 352
Bst4CI ACNGT 2 cut(s) 62, 669
Bst6I CTCTTC 2 cut(s) 487, 527
BstACI GRCGYC 2 cut(s) 215, 408
BstAPI GCANNNNNTGC 1 cut(s) 438
BstC8I GCNNGC 3 cut(s) 434, 448, 685
BstDEI CTNAG 1 cut(s) 110
BstDSI CCRYGG 1 cut(s) 393
BstEII GGTNACC 1 cut(s) 346
BstF5I GGATG 2 cut(s) 534, 604
BstFNI CGCG 1 cut(s) 683
BstMWI GCNNNNNNNGC 5 cut(s) 212, 221, 438, 447, 684
BstNI CCWGG 2 cut(s) 251, 352
BstPI GGTNACC 1 cut(s) 346
BstSCI CCNGG 2 cut(s) 249, 350
BstSFI CTRYAG 1 cut(s) 439
BstUI CGCG 1 cut(s) 683
BstV1I GCAGC 3 cut(s) 179, 190, 211
BstV2I GAAGAC 2 cut(s) 408, 554
BtgI CCRYGG 1 cut(s) 393
BtgZI GCGATG 2 cut(s) 319, 664
BtsCI GGATG 2 cut(s) 534, 604
BtsI GCAGTG 1 cut(s) 493
BtsIMutI CAGTG 1 cut(s) 493
BtuMI TCGCGA 1 cut(s) 683
Cac8I GCNNGC 3 cut(s) 434, 448, 685
CaiI CAGNNNCTG 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 247, 280
CseI GACGC 2 cut(s) 204, 416
DdeI CTNAG 1 cut(s) 110
Eam1104I CTCTTC 2 cut(s) 487, 527
EarI CTCTTC 2 cut(s) 487, 527
Eco24I GRGCYC 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 247, 280
Eco57I CTGAAG 1 cut(s) 314
Eco91I GGTNACC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 346
EcoRII CCWGG 2 cut(s) 249, 350
EcoT38I GRGCYC 1 cut(s) 257
FaiI YATR 1 cut(s) 260
FaqI GGGAC 1 cut(s) 343
FauI CCCGC 1 cut(s) 28
FblI GTMKAC 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 193, 204, 225
FokI GGATG 2 cut(s) 541, 611
FriOI GRGCYC 1 cut(s) 257
Fsp4HI GCNGC 3 cut(s) 193, 204, 225
FspBI CTAG 1 cut(s) 555
GluI GCNGC 3 cut(s) 193, 204, 225
HapII CCGG 2 cut(s) 54, 230
HgaI GACGC 2 cut(s) 204, 416
Hin1I GRCGYC 2 cut(s) 215, 408
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 171, 387
HpaII CCGG 2 cut(s) 54, 230
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 2 cut(s) 280, 427
Hpy188I TCNGA 3 cut(s) 95, 163, 328
Hpy188III TCNNGA 3 cut(s) 54, 175, 682
Hpy8I GTNNAC 2 cut(s) 280, 427
Hpy99I CGWCG 4 cut(s) 410, 425, 428, 431
HpyCH4III ACNGT 2 cut(s) 62, 669
HpyCH4IV ACGT 1 cut(s) 471
HpyCH4V TGCA 3 cut(s) 227, 441, 672
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 221, 438, 447, 684
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 1 cut(s) 471
Hsp92I GRCGYC 2 cut(s) 215, 408
Kpn2I TCCGGA 1 cut(s) 53
LmnI GCTCC 4 cut(s) 235, 260, 329, 578
Lsp1109I GCAGC 3 cut(s) 179, 190, 211
LweI GCATC 1 cut(s) 687
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 471
MaeIII GTNAC 2 cut(s) 346, 467
MbiI CCGCTC 1 cut(s) 23
MboII GAAGA 6 cut(s) 364, 413, 504, 521, 544, 559
MfeI CAATTG 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 257
MluCI AATT 4 cut(s) 518, 567, 587, 624
MlyI GAGTC 2 cut(s) 180, 381
MmeI TCCRAC 6 cut(s) 44, 118, 351, 486, 544, 573
MnlI CCTC 9 cut(s) 226, 314, 341, 352, 371, 374, 490, 573, 589
MroI TCCGGA 1 cut(s) 53
MspI CCGG 2 cut(s) 54, 230
MspR9I CCNGG 2 cut(s) 251, 352
MunI CAATTG 1 cut(s) 587
MvaI CCWGG 2 cut(s) 251, 352
MvnI CGCG 1 cut(s) 683
MwoI GCNNNNNNNGC 5 cut(s) 212, 221, 438, 447, 684
NlaIV GGNNCC 4 cut(s) 256, 282, 325, 451
NmuCI GTSAC 2 cut(s) 346, 467
NruI TCGCGA 1 cut(s) 683
PkrI GCNGC 3 cut(s) 194, 205, 226
PleI GAGTC 2 cut(s) 179, 381
PpsI GAGTC 2 cut(s) 179, 381
Psp6I CCWGG 2 cut(s) 249, 350
PspEI GGTNACC 1 cut(s) 346
PspGI CCWGG 2 cut(s) 249, 350
PspN4I GGNNCC 4 cut(s) 256, 282, 325, 451
PspPI GGNCC 2 cut(s) 247, 280
PstI CTGCAG 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 244
RruI TCGCGA 1 cut(s) 683
SalI GTCGAC 1 cut(s) 425
SatI GCNGC 3 cut(s) 193, 204, 225
Sau96I GGNCC 2 cut(s) 247, 280
SchI GAGTC 2 cut(s) 180, 381
ScrFI CCNGG 2 cut(s) 251, 352
SduI GDGCHC 1 cut(s) 257
SetI ASST 9 cut(s) 189, 246, 252, 300, 333, 353, 438, 448, 474
SfaNI GCATC 1 cut(s) 687
SfcI CTRYAG 1 cut(s) 439
SgrDI CGTCGACG 1 cut(s) 425
SinI GGWCC 2 cut(s) 247, 280
Sse9I AATT 4 cut(s) 518, 567, 587, 624
SsiI CCGC 1 cut(s) 21
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 2 cut(s) 249, 350
TaaI ACNGT 2 cut(s) 62, 669
TaiI ACGT 1 cut(s) 474
TaqI TCGA 1 cut(s) 426
TaqII GACCGA 1 cut(s) 334
TasI AATT 4 cut(s) 518, 567, 587, 624
TscAI CASTG 1 cut(s) 493
TseFI GTSAC 2 cut(s) 346, 467
TseI GCWGC 3 cut(s) 192, 203, 224
Tsp45I GTSAC 2 cut(s) 346, 467
TspDTI ATGAA 3 cut(s) 301, 545, 560
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 493
VpaK11BI GGWCC 2 cut(s) 247, 280
XapI RAATTY 2 cut(s) 518, 567
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.