FvH4_2g18740

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014531
Physical Location & Seq
Reverse (-)
15999225 .. 16000568
1344 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g18740.t1

Sequence Viewer

Length: 642 bp
ATGTCCGAAAACAAAGCCAGACCGATCAGCCTCTTCTGCCCCTCGGTGCCGAGCACAGCCCGAGTTCTGGTGTCTCCGGAGCAGAGGCTGGACTTGGGCTCCATAGCCCGGACGTTTGGGCTCGACCCTTCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGACCCGACCTCGTCGCCTGCTCCGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCCGCCAAGGGACTCTTTACCGGCGAAAACGACGCCTCCCCACTTGTCGTTGACGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGGCATGATGGTGTAAAGACTATTGGGTATGTGACTGAAGACCAAGATAGTAAGCTGGTCAGTAGTAAAAAGACCAGGACCAGTGACCCAGGATGTGGAGTGCCCAACTACAATGGCATTTGCTCCAAGAGAAAGCAATTGCTGGAGGATGTAAACTTGATCAAGAAGCTAAAGATCAATGATACTAATCCCGATAACCAAGGAAGAAGTAGAGACGTATGCAACAGTATCTCAAACACGAAATCCCAATTTAGGTGCAGCTACTCAAGTGGACGAGTGAAGCGGATGAGAGAAGATGAAGCAGTCGAAGTTTCGCATTGCAAAAAGATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

23.44

Weight (kDa)

9.6

Isoelectric Point (pI)

36.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 46
AccB7I CCANNNNNTGG 1 cut(s) 401
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 2 cut(s) 222, 589
AcoI YGGCCR 1 cut(s) 148
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 252
AfiI CCNNNNNNNGG 6 cut(s) 67, 108, 133, 195, 401, 558
AjnI CCWGG 2 cut(s) 380, 394
AluBI AGCT 5 cut(s) 142, 280, 361, 475, 567
AluI AGCT 5 cut(s) 142, 280, 361, 475, 567
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 78, 513
AlwNI CAGNNNCTG 1 cut(s) 88
Ama87I CYCGRG 1 cut(s) 60
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 1 cut(s) 564
AspS9I GGNCC 2 cut(s) 167, 384
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 148
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 2 cut(s) 167, 384
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 46
BanII GRGCYC 2 cut(s) 101, 123
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 576
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 163, 289
BciT130I CCWGG 2 cut(s) 382, 396
BclI TGATCA 1 cut(s) 465
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 78, 513
BisI GCNGC 1 cut(s) 565
BlsI GCNGC 1 cut(s) 566
Bme1390I CCNGG 3 cut(s) 109, 382, 396
Bme18I GGWCC 2 cut(s) 167, 384
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 2 cut(s) 167, 384
BmiI GGNNCC 3 cut(s) 48, 100, 169
BmrFI CCNGG 3 cut(s) 109, 382, 396
BpiI GAAGAC 1 cut(s) 351
BpmI CTGGAG 1 cut(s) 470
BpuEI CTTGAG 1 cut(s) 556
BpuMI CCSGG 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 4 cut(s) 42, 225, 394, 505
BsaWI WCCGGW 1 cut(s) 76
BsaXI ACNNNNNCTCC 4 cut(s) 83, 113, 239, 269
Bsc4I CCNNNNNNNGG 6 cut(s) 67, 108, 133, 195, 401, 558
Bse118I RCCGGY 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 387
Bse3DI GCAATG 1 cut(s) 622
Bse8I GATNNNNATC 1 cut(s) 492
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 2 cut(s) 382, 396
BseDI CCNNGG 4 cut(s) 42, 225, 394, 505
BseGI GGATG 3 cut(s) 404, 460, 597
BseJI GATNNNNATC 1 cut(s) 492
BseLI CCNNNNNNNGG 6 cut(s) 67, 108, 133, 195, 401, 558
BseMI GCAATG 1 cut(s) 622
BseNI ACTGG 1 cut(s) 387
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 1 cut(s) 576
BsgI GTGCAG 1 cut(s) 583
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 77, 109, 240
BslFI GGGAC 2 cut(s) 187, 243
BslI CCNNNNNNNGG 6 cut(s) 67, 108, 133, 195, 401, 558
BsmAI GTCTC 2 cut(s) 78, 513
BsmBI CGTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 187, 243
BsnI GGCC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 4 cut(s) 56, 101, 123, 411
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 3 cut(s) 24, 465, 480
BspACI CCGC 2 cut(s) 222, 589
BspANI GGCC 1 cut(s) 150
BspEI TCCGGA 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 48, 100, 169
BspT107I GGYRCC 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 622
BsrFI RCCGGY 1 cut(s) 239
BsrI ACTGG 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 4 cut(s) 42, 225, 394, 505
BssMI GATC 3 cut(s) 24, 465, 480
BssNI GRCGYC 1 cut(s) 252
BssT1I CCWWGG 2 cut(s) 225, 505
Bst2UI CCWGG 2 cut(s) 382, 396
Bst4CI ACNGT 2 cut(s) 136, 533
Bst6I CTCTTC 1 cut(s) 38
BstACI GRCGYC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 184, 278
BstF5I GGATG 3 cut(s) 404, 460, 597
BstKTI GATC 3 cut(s) 27, 468, 483
BstMAI GTCTC 2 cut(s) 78, 513
BstMBI GATC 3 cut(s) 24, 465, 480
BstMWI GCNNNNNNNGC 4 cut(s) 36, 282, 291, 307
BstNI CCWGG 2 cut(s) 382, 396
BstSCI CCNGG 3 cut(s) 107, 380, 394
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 576
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 3 cut(s) 404, 460, 597
BtsIMutI CAGTG 1 cut(s) 394
Cac8I GCNNGC 2 cut(s) 184, 278
CaiI CAGNNNCTG 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 2 cut(s) 167, 384
CseI GACGC 1 cut(s) 260
CviAII CATG 2 cut(s) 195, 311
DpnI GATC 3 cut(s) 26, 467, 482
DpnII GATC 3 cut(s) 24, 465, 480
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 225, 505
Eco24I GRGCYC 2 cut(s) 101, 123
Eco47I GGWCC 2 cut(s) 167, 384
Eco57I CTGAAG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 60
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 380, 394
EcoT14I CCWWGG 2 cut(s) 225, 505
EcoT38I GRGCYC 2 cut(s) 101, 123
ErhI CCWWGG 2 cut(s) 225, 505
Esp3I CGTCTC 1 cut(s) 513
FaeI CATG 2 cut(s) 198, 314
FaiI YATR 5 cut(s) 104, 196, 312, 336, 526
FalI AAGNNNNNCTT 2 cut(s) 218, 250
FaqI GGGAC 2 cut(s) 187, 243
FatI CATG 2 cut(s) 194, 310
FbaI TGATCA 1 cut(s) 465
Fnu4HI GCNGC 1 cut(s) 565
FokI GGATG 3 cut(s) 411, 467, 604
FriOI GRGCYC 2 cut(s) 101, 123
Fsp4HI GCNGC 1 cut(s) 565
GluI GCNGC 1 cut(s) 565
GsuI CTGGAG 1 cut(s) 470
HaeIII GGCC 1 cut(s) 150
HapII CCGG 3 cut(s) 77, 109, 240
HgaI GACGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 2 cut(s) 198, 314
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 1 cut(s) 231
HpaII CCGG 3 cut(s) 77, 109, 240
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 3 cut(s) 271, 460, 578
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 77, 469, 497
Hpy8I GTNNAC 3 cut(s) 271, 460, 578
Hpy99I CGWCG 3 cut(s) 136, 182, 254
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 136, 533
HpyCH4IV ACGT 2 cut(s) 113, 522
HpyCH4V TGCA 4 cut(s) 285, 528, 564, 627
HpyF10VI GCNNNNNNNGC 4 cut(s) 36, 282, 291, 307
HpySE526I ACGT 2 cut(s) 113, 522
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 2 cut(s) 198, 314
Kpn2I TCCGGA 1 cut(s) 76
Ksp22I TGATCA 1 cut(s) 465
Kzo9I GATC 3 cut(s) 24, 465, 480
LmnI GCTCC 4 cut(s) 79, 104, 191, 434
Lsp1109I GCAGC 1 cut(s) 576
MaeII ACGT 2 cut(s) 113, 522
MaeIII GTNAC 3 cut(s) 190, 337, 389
MalI GATC 3 cut(s) 26, 467, 482
MboI GATC 3 cut(s) 24, 465, 480
MboII GAAGA 5 cut(s) 25, 208, 356, 522, 611
MfeI CAATTG 1 cut(s) 443
MhlI GDGCHC 4 cut(s) 56, 101, 123, 411
MluCI AATT 2 cut(s) 443, 554
MlyI GAGTC 1 cut(s) 225
MroI TCCGGA 1 cut(s) 76
MslI CAYNNNNRTG 1 cut(s) 315
MspI CCGG 3 cut(s) 77, 109, 240
MspR9I CCNGG 3 cut(s) 109, 382, 396
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 2 cut(s) 382, 396
MwoI GCNNNNNNNGC 4 cut(s) 36, 282, 291, 307
NciI CCSGG 1 cut(s) 109
NdeII GATC 3 cut(s) 24, 465, 480
NlaIII CATG 2 cut(s) 198, 314
NlaIV GGNNCC 3 cut(s) 48, 100, 169
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 3 cut(s) 190, 337, 389
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 1 cut(s) 566
PleI GAGTC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 225
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 380, 394
PspGI CCWGG 2 cut(s) 380, 394
PspN4I GGNNCC 3 cut(s) 48, 100, 169
PspPI GGNCC 2 cut(s) 167, 384
PspPPI RGGWCCY 1 cut(s) 167
PstNI CAGNNNCTG 1 cut(s) 88
PsyI GACNNNGTC 1 cut(s) 176
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 1 cut(s) 565
Sau3AI GATC 3 cut(s) 24, 465, 480
Sau96I GGNCC 2 cut(s) 167, 384
SchI GAGTC 1 cut(s) 225
ScrFI CCNGG 3 cut(s) 109, 382, 396
SduI GDGCHC 4 cut(s) 56, 101, 123, 411
SetI ASST 9 cut(s) 116, 144, 177, 282, 363, 477, 525, 563, 569
SinI GGWCC 2 cut(s) 167, 384
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 571
SmoI CTYRAG 1 cut(s) 571
Sse9I AATT 2 cut(s) 443, 554
SsiI CCGC 2 cut(s) 222, 589
StyD4I CCNGG 3 cut(s) 107, 380, 394
StyI CCWWGG 2 cut(s) 225, 505
TaaI ACNGT 2 cut(s) 136, 533
TaiI ACGT 2 cut(s) 116, 525
TaqI TCGA 3 cut(s) 123, 131, 612
TaqII GACCGA 1 cut(s) 37
TasI AATT 2 cut(s) 443, 554
TscAI CASTG 1 cut(s) 394
TseFI GTSAC 3 cut(s) 190, 337, 389
TseI GCWGC 1 cut(s) 564
Tsp45I GTSAC 3 cut(s) 190, 337, 389
TspDTI ATGAA 2 cut(s) 145, 618
TspGWI ACGGA 1 cut(s) 178
TspRI CASTG 1 cut(s) 394
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 2 cut(s) 167, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.