Rw6G023720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0014531
Physical Location & Seq
Reverse (-)
46352506 .. 46354325
1820 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G023720.1

Sequence Viewer

Length: 696 bp
ATGTCAGAAAACAAAGCCAGAACGATCAAGCTGTTCTGCCCATCGGTGCCGAGCACAGCCCGAGTACTGGTGGCACCGTTGGAGCAGAGGCTGGACTTGGGCTCCATAGCCCGGACTTTTGGGCTCGACCCGTCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGAACCGACCTCGTCGCCTCCTCAGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCTGCCAAGGGACTCTCCACCGGGGAAAACGACGCCAACCCGCTTGTTGTTGATGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGACATGATGCTGTGAAGACTATTGGGTATGGGACTGAAGATGAAGATAGTAAGCATAGTAAAAAGACGAGGACAGGTGACCCAGGATGTGGAGTGCCCAGCTACAATGGAATTTGCTCCAAGAGAAAGCAATTGCCGGAAGACTTAAACTTGCTCAAGAAGCTAAAAATTAATGAAACTAACCCCGATAACAAAGGAAGAAGAAGAGACCTATGCAACAATATCTCAAACACGAAAACCCAATTTGGATGCAGCTACACAAGCGGACAAGCGAAGCGAATGAGAGAAGATGAGGCATTCTGCCCCCGCATAATTAGGGGTCTAAAAATTGGAAGAAGATATTGTACAGTAAAGGACCCAATTGGCAGCTATTGTACAGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

231

Amino Acids

25.41

Weight (kDa)

9.7

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 73
AccB7I CCANNNNNTGG 1 cut(s) 398
AccI GTMKAC 1 cut(s) 134
AciI CCGC 3 cut(s) 263, 573, 616
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 66, 655, 685
AfiI CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 7 cut(s) 31, 145, 283, 411, 472, 564, 678
AluI AGCT 7 cut(s) 31, 145, 283, 411, 472, 564, 678
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 510
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 561, 675
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 664
AsuC2I CCSGG 2 cut(s) 112, 244
AsuHPI GGTGA 2 cut(s) 151, 398
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 664
BaeGI GKGCMC 1 cut(s) 408
BanI GGYRCC 2 cut(s) 46, 73
BanII GRGCYC 2 cut(s) 104, 126
BarI GAAGNNNNNNTAC 2 cut(s) 637, 669
BbsI GAAGAC 2 cut(s) 332, 456
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 2 cut(s) 573, 687
BccI CCATC 2 cut(s) 49, 269
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 2 cut(s) 112, 244
BcoDI GTCTC 1 cut(s) 510
BisI GCNGC 2 cut(s) 562, 676
BlsI GCNGC 2 cut(s) 563, 677
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 112, 244, 393
Bme18I GGWCC 1 cut(s) 664
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 664
BmiI GGNNCC 5 cut(s) 48, 75, 103, 172, 666
BmrFI CCNGG 3 cut(s) 112, 244, 393
BmsI GCATC 2 cut(s) 307, 548
BpiI GAAGAC 2 cut(s) 332, 456
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 112, 244
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 3 cut(s) 228, 243, 391
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 228, 243, 391
BseGI GGATG 2 cut(s) 401, 563
BseLI CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 178, 200
BseSI GKGCMC 1 cut(s) 408
BseXI GCAGC 2 cut(s) 573, 687
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 2 cut(s) 46, 73
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 112, 243, 446
BslFI GGGAC 3 cut(s) 190, 246, 355
BslI CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 3 cut(s) 190, 246, 355
BsmI GAATGC 1 cut(s) 605
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 510
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 4 cut(s) 56, 104, 126, 408
Bsp1407I TGTACA 2 cut(s) 653, 683
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 3 cut(s) 263, 573, 616
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 5 cut(s) 48, 75, 103, 172, 666
BspT107I GGYRCC 2 cut(s) 46, 73
BspTNI GGTCTC 1 cut(s) 510
BsrGI TGTACA 2 cut(s) 653, 683
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 228, 243, 391
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 4 cut(s) 78, 139, 658, 688
Bst6I CTCTTC 1 cut(s) 508
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 285
BstAUI TGTACA 2 cut(s) 653, 683
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 190
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 2 cut(s) 401, 563
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 285, 294, 469, 570
BstNI CCWGG 1 cut(s) 393
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 110, 242, 391
BstSLI GKGCMC 1 cut(s) 408
BstV1I GCAGC 2 cut(s) 573, 687
BstV2I GAAGAC 2 cut(s) 332, 456
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 401, 563
BtsIMutI CAGTG 1 cut(s) 693
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 664
CseI GACGC 1 cut(s) 263
Csp6I GTAC 3 cut(s) 65, 654, 684
CviAII CATG 2 cut(s) 198, 314
CviQI GTAC 3 cut(s) 65, 654, 684
DdeI CTNAG 1 cut(s) 190
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 104, 126
Eco31I GGTCTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 664
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 386
EcoO109I RGGNCCY 1 cut(s) 664
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 104, 126
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 201, 317
FaiI YATR 7 cut(s) 107, 199, 315, 339, 366, 523, 620
FaqI GGGAC 3 cut(s) 190, 246, 355
FatI CATG 2 cut(s) 197, 313
FauI CCCGC 2 cut(s) 270, 623
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 2 cut(s) 562, 676
FokI GGATG 2 cut(s) 408, 570
FriOI GRGCYC 2 cut(s) 104, 126
Fsp4HI GCNGC 2 cut(s) 562, 676
GluI GCNGC 2 cut(s) 562, 676
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 112, 243, 446
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 2 cut(s) 201, 317
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 234
HpaII CCGG 3 cut(s) 112, 243, 446
HphI GGTGA 2 cut(s) 151, 398
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 466
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 4 cut(s) 136, 139, 185, 257
HpyCH4III ACNGT 4 cut(s) 78, 139, 658, 688
HpyCH4V TGCA 3 cut(s) 288, 525, 561
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 294, 469, 570
HpyF3I CTNAG 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 2 cut(s) 201, 317
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 3 cut(s) 82, 107, 431
Lsp1109I GCAGC 2 cut(s) 573, 687
LweI GCATC 2 cut(s) 307, 548
MaeIII GTNAC 2 cut(s) 193, 386
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MfeI CAATTG 2 cut(s) 440, 669
MhlI GDGCHC 4 cut(s) 56, 104, 126, 408
MluCI AATT 7 cut(s) 420, 440, 477, 551, 621, 636, 669
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 2 cut(s) 455, 480
MspI CCGG 3 cut(s) 112, 243, 446
MspR9I CCNGG 3 cut(s) 112, 244, 393
MunI CAATTG 2 cut(s) 440, 669
Mva1269I GAATGC 1 cut(s) 605
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 4 cut(s) 285, 294, 469, 570
NciI CCSGG 2 cut(s) 112, 244
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 201, 317
NlaIV GGNNCC 5 cut(s) 48, 75, 103, 172, 666
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 193, 386
PctI GAATGC 1 cut(s) 605
PflFI GACNNNGTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 2 cut(s) 563, 677
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 664
PshBI ATTAAT 1 cut(s) 480
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 391
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 5 cut(s) 48, 75, 103, 172, 666
PspPI GGNCC 1 cut(s) 664
PspPPI RGGWCCY 1 cut(s) 664
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 3 cut(s) 66, 655, 685
RsaNI GTAC 3 cut(s) 65, 654, 684
SalI GTCGAC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 455, 480
SatI GCNGC 2 cut(s) 562, 676
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 664
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 112, 244, 393
SduI GDGCHC 4 cut(s) 56, 104, 126, 408
SfaNI GCATC 2 cut(s) 307, 548
SgrDI CGTCGACG 1 cut(s) 133
SinI GGWCC 1 cut(s) 664
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 7 cut(s) 420, 440, 477, 551, 621, 636, 669
SsiI CCGC 3 cut(s) 263, 573, 616
StyD4I CCNGG 3 cut(s) 110, 242, 391
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 4 cut(s) 78, 139, 658, 688
TaqI TCGA 2 cut(s) 126, 134
TasI AATT 7 cut(s) 420, 440, 477, 551, 621, 636, 669
TatI WGTACW 3 cut(s) 64, 653, 683
Tru1I TTAA 2 cut(s) 455, 480
Tru9I TTAA 2 cut(s) 455, 480
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 2 cut(s) 193, 386
TseI GCWGC 2 cut(s) 561, 675
Tsp45I GTSAC 2 cut(s) 193, 386
TspDTI ATGAA 3 cut(s) 148, 366, 498
TspRI CASTG 1 cut(s) 693
Tth111I GACNNNGTC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 664
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.