Prupe.8G200700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0014531
Physical Location & Seq
Forward (+)
18978823 .. 18980746
1924 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G200700.1

Sequence Viewer

Length: 654 bp
ATGGCAGAAAACAAAGCCAGAAGACCGATCAAGCTGTTCTGCCCATCAGTGGCAAAGACGGTGTCGTTGTTCGTATGGGAGGAGCAGAGGCTGGACTTGGGCTCCATAGCCAGAACGTTTGGGCTGGACCCACCAACCCTGAAGCTCAACGGTCACTTTATCAGCAGAGGGCTCGACCTCATTGCCTCCTCGGTCACCTGGAAGTCCCTCCTTTCTTTCTTCTCTGCTAAAGGACTCTCAACAGGGGAAAACGACAGCAACCCCATTGTCGTTGATGGCAAGCTCTGCAAAGTTGGCACCAAGCGAGGACATGAACTACACGAGGTCGTTGATAACAGAGGAAGGGCAGCTTTTGAAGATGACAGCTTGCTGATCAAGAGTAAAAAGATGAGGAAAAGCAACCCAGGTACATCAACTGAAAGCAATGGCAGAATTGGTATTTGCTCTTCCAAGAGAAAGCAATTGTTAGAAGATGTAAACTTGCTTAAAAAGCTAAAAATAAGTGAAACTAACCCAGATATCCAAGGAAGAAATAAAAGCCAGTCCAGCAGCATCTCAGGTGCCCAACTTAGATGCAGTTATATGAGGGGGAAGATGAAGAGGAAGAGAGAAGATGAGGCAGTCGTGTCTGCTCCTTACGAAGAGATTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.08

Weight (kDa)

9.74

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 296, 560
AclI AACGTT 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 161
AfaI GTAC 1 cut(s) 409
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 1 cut(s) 356
AjnI CCWGG 2 cut(s) 197, 403
AluBI AGCT 6 cut(s) 34, 145, 283, 350, 366, 493
AluI AGCT 6 cut(s) 34, 145, 283, 350, 366, 493
AlwNI CAGNNNCTG 1 cut(s) 91
ApeKI GCWGC 2 cut(s) 347, 549
ArsI GACNNNNNNTTYG 2 cut(s) 47, 79
AspS9I GGNCC 1 cut(s) 127
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 127
BaeGI GKGCMC 1 cut(s) 565
BanI GGYRCC 2 cut(s) 296, 560
BanII GRGCYC 2 cut(s) 104, 174
BarI GAAGNNNNNNTAC 2 cut(s) 430, 462
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 359, 561
BccI CCATC 2 cut(s) 52, 269
BcgI CGANNNNNNTGC 4 cut(s) 154, 164, 188, 198
BciT130I CCWGG 2 cut(s) 199, 405
BclI TGATCA 1 cut(s) 372
BisI GCNGC 2 cut(s) 348, 550
BlsI GCNGC 2 cut(s) 349, 551
Bme1390I CCNGG 2 cut(s) 199, 405
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmiI GGNNCC 4 cut(s) 103, 129, 298, 562
BmrFI CCNGG 2 cut(s) 199, 405
BmsI GCATC 2 cut(s) 561, 563
BpiI GAAGAC 1 cut(s) 28
BsaJI CCNNGG 3 cut(s) 189, 403, 523
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 541
Bse3DI GCAATG 2 cut(s) 180, 430
BseBI CCWGG 2 cut(s) 199, 405
BseDI CCNNGG 3 cut(s) 189, 403, 523
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMI GCAATG 2 cut(s) 180, 430
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 541
BseRI GAGGAG 2 cut(s) 95, 178
BseSI GKGCMC 1 cut(s) 565
BseXI GCAGC 2 cut(s) 359, 561
BshNI GGYRCC 2 cut(s) 296, 560
BslFI GGGAC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 190
Bsp1286I GDGCHC 3 cut(s) 104, 174, 565
Bsp143I GATC 2 cut(s) 27, 372
BspCNI CTCAG 1 cut(s) 569
BspLI GGNNCC 4 cut(s) 103, 129, 298, 562
BspQI GCTCTTC 1 cut(s) 451
BspT107I GGYRCC 2 cut(s) 296, 560
BsrDI GCAATG 2 cut(s) 180, 430
BsrI ACTGG 1 cut(s) 541
BssECI CCNNGG 3 cut(s) 189, 403, 523
BssMI GATC 2 cut(s) 27, 372
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 523
Bst2BI CACGAG 1 cut(s) 320
Bst2UI CCWGG 2 cut(s) 199, 405
Bst4CI ACNGT 2 cut(s) 61, 152
Bst6I CTCTTC 4 cut(s) 451, 593, 599, 636
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 2 cut(s) 281, 368
BstDEI CTNAG 2 cut(s) 556, 569
BstEII GGTNACC 1 cut(s) 193
BstKTI GATC 2 cut(s) 30, 375
BstMBI GATC 2 cut(s) 27, 372
BstMWI GCNNNNNNNGC 4 cut(s) 285, 294, 490, 546
BstNI CCWGG 2 cut(s) 199, 405
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 2 cut(s) 197, 403
BstSLI GKGCMC 1 cut(s) 565
BstV1I GCAGC 2 cut(s) 359, 561
BstV2I GAAGAC 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 2 cut(s) 281, 368
CaiI CAGNNNCTG 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 408
CviAII CATG 1 cut(s) 311
CviQI GTAC 1 cut(s) 408
DdeI CTNAG 2 cut(s) 556, 569
DpnI GATC 2 cut(s) 29, 374
DpnII GATC 2 cut(s) 27, 372
Eam1104I CTCTTC 4 cut(s) 451, 593, 599, 636
EarI CTCTTC 4 cut(s) 451, 593, 599, 636
Eco130I CCWWGG 1 cut(s) 523
Eco24I GRGCYC 2 cut(s) 104, 174
Eco32I GATATC 1 cut(s) 520
Eco47I GGWCC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 193
EcoO65I GGTNACC 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 197, 403
EcoRV GATATC 1 cut(s) 520
EcoT14I CCWWGG 1 cut(s) 523
EcoT38I GRGCYC 2 cut(s) 104, 174
ErhI CCWWGG 1 cut(s) 523
FaeI CATG 1 cut(s) 314
FaiI YATR 6 cut(s) 76, 107, 312, 582, 584, 650
FalI AAGNNNNNCTT 2 cut(s) 334, 366
FaqI GGGAC 1 cut(s) 190
FatI CATG 1 cut(s) 310
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 2 cut(s) 348, 550
FriOI GRGCYC 2 cut(s) 104, 174
Fsp4HI GCNGC 2 cut(s) 348, 550
GluI GCNGC 2 cut(s) 348, 550
Hin1II CATG 1 cut(s) 314
HinfI GANTC 1 cut(s) 234
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 478
Hpy188III TCNNGA 1 cut(s) 376
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 1 cut(s) 336
HpyCH4III ACNGT 2 cut(s) 61, 152
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 2 cut(s) 288, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 294, 490, 546
HpyF3I CTNAG 2 cut(s) 556, 569
HpySE526I ACGT 1 cut(s) 116
Hsp92II CATG 1 cut(s) 314
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 2 cut(s) 27, 372
LguI GCTCTTC 1 cut(s) 451
LmnI GCTCC 3 cut(s) 82, 107, 637
Lsp1109I GCAGC 2 cut(s) 359, 561
LweI GCATC 2 cut(s) 561, 563
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 152, 193
MalI GATC 2 cut(s) 29, 374
MboI GATC 2 cut(s) 27, 372
MfeI CAATTG 1 cut(s) 461
MhlI GDGCHC 3 cut(s) 104, 174, 565
MluCI AATT 2 cut(s) 432, 461
MlyI GAGTC 1 cut(s) 228
MseI TTAA 1 cut(s) 486
MspR9I CCNGG 2 cut(s) 199, 405
MunI CAATTG 1 cut(s) 461
MvaI CCWGG 2 cut(s) 199, 405
MwoI GCNNNNNNNGC 4 cut(s) 285, 294, 490, 546
NdeII GATC 2 cut(s) 27, 372
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 4 cut(s) 103, 129, 298, 562
NmuCI GTSAC 2 cut(s) 152, 193
PciSI GCTCTTC 1 cut(s) 451
PflFI GACNNNGTC 1 cut(s) 61
PkrI GCNGC 2 cut(s) 349, 551
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp1406I AACGTT 1 cut(s) 116
Psp6I CCWGG 2 cut(s) 197, 403
PspEI GGTNACC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 197, 403
PspN4I GGNNCC 4 cut(s) 103, 129, 298, 562
PspPI GGNCC 1 cut(s) 127
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 61
RsaI GTAC 1 cut(s) 409
RsaNI GTAC 1 cut(s) 408
SapI GCTCTTC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 486
SatI GCNGC 2 cut(s) 348, 550
Sau3AI GATC 2 cut(s) 27, 372
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 199, 405
SduI GDGCHC 3 cut(s) 104, 174, 565
SfaNI GCATC 2 cut(s) 561, 563
SinI GGWCC 1 cut(s) 127
Sse9I AATT 2 cut(s) 432, 461
StyD4I CCNGG 2 cut(s) 197, 403
StyI CCWWGG 1 cut(s) 523
TaaI ACNGT 2 cut(s) 61, 152
TaiI ACGT 1 cut(s) 119
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 2 cut(s) 40, 181
TasI AATT 2 cut(s) 432, 461
Tru1I TTAA 1 cut(s) 486
Tru9I TTAA 1 cut(s) 486
TscAI CASTG 1 cut(s) 54
TseFI GTSAC 2 cut(s) 152, 193
TseI GCWGC 2 cut(s) 347, 549
Tsp45I GTSAC 2 cut(s) 152, 193
TspDTI ATGAA 2 cut(s) 327, 611
TspRI CASTG 1 cut(s) 54
Tth111I GACNNNGTC 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.