Rh6BG276100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014531
Physical Location & Seq
Reverse (-)
49704673 .. 49705602
930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG276100.1

Sequence Viewer

Length: 501 bp
ATGTCAGAAAACAAAGCCAGAACGATCAAGCTGTTCTGCCCATCGGTTCTGAGCACAGCCCGAGTACTGGTGGCACCGTTGGAGCAGAGGCTGGACTTGGGCTCCATAGCCCGGACGTTTGGGCTCGACCCATCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGAACCGACCTCGTAGCCTCCTCAGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCCGCCAAGGGACTCTCCACCGGGGAAAACGACGCCAACCCGCTTGTTGTTGATGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGACATGATGCTGTAAATACTATTGGGTATGTGACTGAAGATGAAGATAGTAAGCATAGTAAAAAGACGAGAACAGGTGATCCAGGATTCTGGAGTGCCCTCAATGGAATTTGCTCCAAGAGAAAGCAATTGCCGGAAGACTTAAACTTGCTCAAGAAGCTAAAAATTAATGAAACTAACCTCGGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.07

Weight (kDa)

9.57

Isoelectric Point (pI)

24.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AciI CCGC 2 cut(s) 225, 263
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 417
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 66, 496
AfiI CCNNNNNNNGG 3 cut(s) 67, 111, 136
AjnI CCWGG 1 cut(s) 391
AloI GAACNNNNNNTCC 2 cut(s) 373, 405
AluBI AGCT 4 cut(s) 31, 145, 283, 469
AluI AGCT 4 cut(s) 31, 145, 283, 469
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 417
AseI ATTAAT 1 cut(s) 477
AsuC2I CCSGG 2 cut(s) 112, 244
AsuHPI GGTGA 2 cut(s) 151, 398
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 409
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 2 cut(s) 104, 126
BbsI GAAGAC 1 cut(s) 453
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 3 cut(s) 49, 139, 269
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 2 cut(s) 112, 244
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 112, 244, 393
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 75, 103, 172
BmrFI CCNGG 3 cut(s) 112, 244, 393
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 453
BpmI CTGGAG 1 cut(s) 421
BpuEI CTTGAG 1 cut(s) 446
BpuMI CCSGG 2 cut(s) 112, 244
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 228, 243, 490
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 111, 136
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 228, 243, 490
BseLI CCNNNNNNNGG 3 cut(s) 67, 111, 136
BseMII CTCAG 2 cut(s) 41, 204
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 178, 200
BseSI GKGCMC 1 cut(s) 409
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 112, 243, 443
BslFI GGGAC 2 cut(s) 190, 246
BslI CCNNNNNNNGG 3 cut(s) 67, 111, 136
BsmFI GGGAC 2 cut(s) 190, 246
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 4 cut(s) 56, 104, 126, 409
Bsp143I GATC 2 cut(s) 24, 388
BspACI CCGC 2 cut(s) 225, 263
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 42, 203
BspLI GGNNCC 3 cut(s) 75, 103, 172
BspPI GGATC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 228, 243, 490
BssMI GATC 2 cut(s) 24, 388
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 78, 139
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 50, 190
BstKTI GATC 2 cut(s) 27, 391
BstMBI GATC 2 cut(s) 24, 388
BstMWI GCNNNNNNNGC 3 cut(s) 285, 294, 466
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 3 cut(s) 110, 242, 391
BstSLI GKGCMC 1 cut(s) 409
BstV2I GAAGAC 1 cut(s) 453
BstXI CCANNNNNNTGG 1 cut(s) 399
BsuRI GGCC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 91
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 65, 495
CviAII CATG 3 cut(s) 198, 314, 498
CviQI GTAC 2 cut(s) 65, 495
DdeI CTNAG 2 cut(s) 50, 190
DpnI GATC 2 cut(s) 26, 390
DpnII GATC 2 cut(s) 24, 388
EaeI YGGCCR 1 cut(s) 151
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 104, 126
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 104, 126
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 201, 317, 501
FaiI YATR 6 cut(s) 107, 199, 315, 339, 366, 499
FaqI GGGAC 2 cut(s) 190, 246
FatI CATG 3 cut(s) 197, 313, 497
FauI CCCGC 1 cut(s) 270
FriOI GRGCYC 2 cut(s) 104, 126
GsuI CTGGAG 1 cut(s) 421
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 112, 243, 443
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 3 cut(s) 201, 317, 501
HinfI GANTC 2 cut(s) 234, 396
HpaII CCGG 3 cut(s) 112, 243, 443
HphI GGTGA 2 cut(s) 151, 398
Hpy188I TCNGA 2 cut(s) 7, 51
Hpy188III TCNNGA 2 cut(s) 400, 463
Hpy99I CGWCG 2 cut(s) 139, 257
HpyCH4III ACNGT 2 cut(s) 78, 139
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 294, 466
HpyF3I CTNAG 2 cut(s) 50, 190
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 3 cut(s) 201, 317, 501
Kzo9I GATC 2 cut(s) 24, 388
LmnI GCTCC 3 cut(s) 82, 107, 428
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 193, 340
MalI GATC 2 cut(s) 26, 390
MboI GATC 2 cut(s) 24, 388
MboII GAAGA 4 cut(s) 211, 359, 365, 458
MfeI CAATTG 1 cut(s) 437
MhlI GDGCHC 4 cut(s) 56, 104, 126, 409
MluCI AATT 3 cut(s) 417, 437, 474
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 2 cut(s) 452, 477
MspI CCGG 3 cut(s) 112, 243, 443
MspR9I CCNGG 3 cut(s) 112, 244, 393
MunI CAATTG 1 cut(s) 437
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 285, 294, 466
NciI CCSGG 2 cut(s) 112, 244
NdeII GATC 2 cut(s) 24, 388
NlaIII CATG 3 cut(s) 201, 317, 501
NlaIV GGNNCC 3 cut(s) 75, 103, 172
NmuCI GTSAC 2 cut(s) 193, 340
PfeI GAWTC 1 cut(s) 396
PfoI TCCNGGA 1 cut(s) 391
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 477
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 75, 103, 172
PstNI CAGNNNCTG 1 cut(s) 91
RsaI GTAC 2 cut(s) 66, 496
RsaNI GTAC 2 cut(s) 65, 495
SaqAI TTAA 2 cut(s) 452, 477
Sau3AI GATC 2 cut(s) 24, 388
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 112, 244, 393
SduI GDGCHC 4 cut(s) 56, 104, 126, 409
SetI ASST 8 cut(s) 33, 119, 147, 180, 285, 388, 471, 492
SfaNI GCATC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 3 cut(s) 417, 437, 474
SsiI CCGC 2 cut(s) 225, 263
StyD4I CCNGG 3 cut(s) 110, 242, 391
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 78, 139
TaiI ACGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 126, 134
TasI AATT 3 cut(s) 417, 437, 474
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 396
Tru1I TTAA 2 cut(s) 452, 477
Tru9I TTAA 2 cut(s) 452, 477
TseFI GTSAC 2 cut(s) 193, 340
Tsp45I GTSAC 2 cut(s) 193, 340
TspDTI ATGAA 3 cut(s) 148, 366, 495
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 1 cut(s) 417
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.