RLG00000012747

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014531
Physical Location & Seq
Forward (+)
21962753 .. 21963911
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012747

Sequence Viewer

Length: 639 bp
ATGTCAGAAAACAAAGCCAGAACGATCAAGCTGTTCTGCCCATCGGTGCCGAGCACAGCCCGAGTACTGGTGGCACCGTTGGAGCAGAGGCTGGACTTGGGCTCCATAGCCCGGACGTTTGGGCTCGACCCGTCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGAACGGACCTCGTCGCCTCCTCAGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCCGCCAAGGGACTCTCCACCGGGGAAAACGACGCCAGCCCGCTTGTCGTTGATGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGACATGATGCTGTAAAGACTATTGGGTATGTGACTGAAGATGAAGATAGTAAGCATAGTAAAAAGACGAGGACAGGTGACCCAGGATGTGGAGCGCCCAGCTACAATGGAATTTGCTCCAAGAGAAAGCAATTGCCGGAAGACTTAAACTTGCTCAAGAAGCTAAAAATTAATGAAACTAACCCCGATAACCAAGGAAGAAGCAGAGACCTATGCAACAATATCTCAAACACGAAAACCCAATTTAGATGCAGCTACACAAGCGGACAAGCGAAGCGAATGAGAGAAGATGAGGCAGTCGAAGTTTCTCCCTGGAAAAAAATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.35

Weight (kDa)

9.62

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 73
AccB7I CCANNNNNTGG 1 cut(s) 398
AccI GTMKAC 1 cut(s) 134
AciI CCGC 3 cut(s) 225, 263, 573
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
AjnI CCWGG 2 cut(s) 391, 620
AluBI AGCT 6 cut(s) 31, 145, 283, 411, 472, 564
AluI AGCT 6 cut(s) 31, 145, 283, 411, 472, 564
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 1 cut(s) 510
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 561
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 480
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 175
AsuC2I CCSGG 2 cut(s) 112, 244
AsuHPI GGTGA 2 cut(s) 151, 398
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 175
BanI GGYRCC 2 cut(s) 46, 73
BanII GRGCYC 2 cut(s) 104, 126
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 1 cut(s) 573
BccI CCATC 2 cut(s) 49, 269
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 2 cut(s) 393, 622
BcnI CCSGG 2 cut(s) 112, 244
BcoDI GTCTC 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 407
BisI GCNGC 1 cut(s) 562
BlsI GCNGC 1 cut(s) 563
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 4 cut(s) 112, 244, 393, 622
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 175
BmiI GGNNCC 3 cut(s) 48, 75, 103
BmrFI CCNGG 4 cut(s) 112, 244, 393, 622
BmsI GCATC 2 cut(s) 307, 548
BpiI GAAGAC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 2 cut(s) 112, 244
BsaHI GRCGYC 1 cut(s) 255
BsaI GGTCTC 1 cut(s) 510
BsaJI CCNNGG 5 cut(s) 228, 243, 391, 502, 620
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 2 cut(s) 393, 622
BseDI CCNNGG 5 cut(s) 228, 243, 391, 502, 620
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 178, 200
BseXI GCAGC 1 cut(s) 573
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 2 cut(s) 46, 73
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 3 cut(s) 112, 243, 446
BslFI GGGAC 2 cut(s) 190, 246
BslI CCNNNNNNNGG 4 cut(s) 67, 111, 136, 398
BsmAI GTCTC 1 cut(s) 510
BsmFI GGGAC 2 cut(s) 190, 246
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 510
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 3 cut(s) 56, 104, 126
Bsp143I GATC 1 cut(s) 24
BspACI CCGC 3 cut(s) 225, 263, 573
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 3 cut(s) 48, 75, 103
BspT107I GGYRCC 2 cut(s) 46, 73
BspTNI GGTCTC 1 cut(s) 510
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 5 cut(s) 228, 243, 391, 502, 620
BssMI GATC 1 cut(s) 24
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 228, 502
Bst2UI CCWGG 2 cut(s) 393, 622
Bst4CI ACNGT 2 cut(s) 78, 139
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 3 cut(s) 259, 263, 281
BstDEI CTNAG 1 cut(s) 190
BstEII GGTNACC 1 cut(s) 386
BstF5I GGATG 1 cut(s) 401
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 1 cut(s) 27
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 1 cut(s) 24
BstMWI GCNNNNNNNGC 4 cut(s) 285, 294, 469, 570
BstNI CCWGG 2 cut(s) 393, 622
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 4 cut(s) 110, 242, 391, 620
BstV1I GCAGC 1 cut(s) 573
BstV2I GAAGAC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 401
Cac8I GCNNGC 3 cut(s) 259, 263, 281
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 175
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 65
CviAII CATG 2 cut(s) 198, 314
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 190
DpnI GATC 1 cut(s) 26
DpnII GATC 1 cut(s) 24
EaeI YGGCCR 1 cut(s) 151
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 228, 502
Eco24I GRGCYC 2 cut(s) 104, 126
Eco31I GGTCTC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 175
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 391, 620
EcoT14I CCWWGG 2 cut(s) 228, 502
EcoT38I GRGCYC 2 cut(s) 104, 126
ErhI CCWWGG 2 cut(s) 228, 502
FaeI CATG 2 cut(s) 201, 317
FaiI YATR 6 cut(s) 107, 199, 315, 339, 366, 523
FaqI GGGAC 2 cut(s) 190, 246
FatI CATG 2 cut(s) 197, 313
FauI CCCGC 1 cut(s) 270
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 562
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 2 cut(s) 104, 126
Fsp4HI GCNGC 1 cut(s) 562
GlaI GCGC 1 cut(s) 405
GluI GCNGC 1 cut(s) 562
GsaI CCCAGC 1 cut(s) 411
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 1 cut(s) 153
HapII CCGG 3 cut(s) 112, 243, 446
HgaI GACGC 1 cut(s) 263
HhaI GCGC 1 cut(s) 406
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 2 cut(s) 201, 317
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 234
HpaII CCGG 3 cut(s) 112, 243, 446
HphI GGTGA 2 cut(s) 151, 398
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 1 cut(s) 466
Hpy8I GTNNAC 1 cut(s) 135
Hpy99I CGWCG 4 cut(s) 136, 139, 185, 257
HpyCH4III ACNGT 2 cut(s) 78, 139
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 288, 525, 561
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 294, 469, 570
HpyF3I CTNAG 1 cut(s) 190
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 2 cut(s) 201, 317
HspAI GCGC 1 cut(s) 404
Kzo9I GATC 1 cut(s) 24
LmnI GCTCC 4 cut(s) 82, 107, 401, 431
Lsp1109I GCAGC 1 cut(s) 573
LweI GCATC 2 cut(s) 307, 548
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 3 cut(s) 193, 340, 386
MalI GATC 1 cut(s) 26
MboI GATC 1 cut(s) 24
MboII GAAGA 6 cut(s) 211, 359, 365, 461, 519, 608
MfeI CAATTG 1 cut(s) 440
MhlI GDGCHC 3 cut(s) 56, 104, 126
MluCI AATT 4 cut(s) 420, 440, 477, 551
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 2 cut(s) 455, 480
MspI CCGG 3 cut(s) 112, 243, 446
MspR9I CCNGG 4 cut(s) 112, 244, 393, 622
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 2 cut(s) 393, 622
MwoI GCNNNNNNNGC 4 cut(s) 285, 294, 469, 570
NciI CCSGG 2 cut(s) 112, 244
NdeII GATC 1 cut(s) 24
NlaIII CATG 2 cut(s) 201, 317
NlaIV GGNNCC 3 cut(s) 48, 75, 103
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 3 cut(s) 193, 340, 386
PflFI GACNNNGTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 1 cut(s) 563
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 2 cut(s) 391, 620
PspEI GGTNACC 1 cut(s) 386
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 391, 620
PspN4I GGNNCC 3 cut(s) 48, 75, 103
PspPI GGNCC 1 cut(s) 175
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 133
SaqAI TTAA 2 cut(s) 455, 480
SatI GCNGC 1 cut(s) 562
Sau3AI GATC 1 cut(s) 24
Sau96I GGNCC 1 cut(s) 175
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 4 cut(s) 112, 244, 393, 622
SduI GDGCHC 3 cut(s) 56, 104, 126
SfaNI GCATC 2 cut(s) 307, 548
SgrDI CGTCGACG 1 cut(s) 133
SinI GGWCC 1 cut(s) 175
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 4 cut(s) 420, 440, 477, 551
SsiI CCGC 3 cut(s) 225, 263, 573
StyD4I CCNGG 4 cut(s) 110, 242, 391, 620
StyI CCWWGG 2 cut(s) 228, 502
TaaI ACNGT 2 cut(s) 78, 139
TaiI ACGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 126, 134, 609
TasI AATT 4 cut(s) 420, 440, 477, 551
TatI WGTACW 1 cut(s) 64
Tru1I TTAA 2 cut(s) 455, 480
Tru9I TTAA 2 cut(s) 455, 480
TseFI GTSAC 3 cut(s) 193, 340, 386
TseI GCWGC 1 cut(s) 561
Tsp45I GTSAC 3 cut(s) 193, 340, 386
TspDTI ATGAA 3 cut(s) 148, 366, 498
TspGWI ACGGA 1 cut(s) 188
Tth111I GACNNNGTC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 398
VpaK11BI GGWCC 1 cut(s) 175
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 420
XmiI GTMKAC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.