Rroxscaffold_7G00184720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0014531
Physical Location & Seq
Forward (+)
24034911 .. 24037588
2678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184720.1

Sequence Viewer

Length: 627 bp
ATGGCTTGGACTACTACTCTGCAGGATTCAAAGCCAATTGCCTATACTTCACGACTAAATGCCCGAGTACTGGTGGCACCGTTGGAGCAGAGGCTGGACTTGGGCTCCATATCCCGGACGTTTGGGCTCGACCCATCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGAACCGACCTCGTCGCCTCCTCAGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCCGCCAAGGGACTCTCCACCGGGGAAAACGACGCCAGCCCGCTTGTCGTTGATGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGACATGATGCTGTAAAGACTATTGGGTATGTGACTGAAGACGAAGATAATACGCATGGTAAAAAGACGAGGACTGGTGACCCAGGATGTAGAGTGCCCGGCTACGATGGAATTTGCTCCAAGAGAAAGCAATTGCTGGAAGATTTAAACTTGCTCAAGAAGCTAAAGATTAATGAAACTAACCCAGATAACCAAGGAAGAAGCAGAGACCTATGCAACAATACCCAATTTAGGTGCAGCTACACAAACGGACAAGCGAAGCGAATGAGAGAAGATGAGGCAGTCGAAGTTTCTCCCTGGAAAAAAATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.12

Weight (kDa)

9.49

Isoelectric Point (pI)

26.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 76
AciI CCGC 2 cut(s) 228, 266
AcoI YGGCCR 1 cut(s) 154
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 1 cut(s) 258
AfaI GTAC 1 cut(s) 69
AfiI CCNNNNNNNGG 4 cut(s) 70, 114, 139, 543
AgsI TTSAA 1 cut(s) 30
AjnI CCWGG 2 cut(s) 394, 608
AluBI AGCT 4 cut(s) 148, 286, 475, 552
AluI AGCT 4 cut(s) 148, 286, 475, 552
Alw26I GTCTC 1 cut(s) 513
AlwNI CAGNNNCTG 1 cut(s) 94
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 549
ApoI RAATTY 1 cut(s) 423
AseI ATTAAT 1 cut(s) 483
AsuC2I CCSGG 3 cut(s) 115, 247, 411
AsuHPI GGTGA 2 cut(s) 154, 401
AvaI CYCGRG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 411
BanI GGYRCC 1 cut(s) 76
BanII GRGCYC 2 cut(s) 107, 129
BbsI GAAGAC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 561
BccI CCATC 3 cut(s) 142, 272, 413
BceAI ACGGC 1 cut(s) 169
BciT130I CCWGG 2 cut(s) 396, 610
BcnI CCSGG 3 cut(s) 115, 247, 411
BcoDI GTCTC 1 cut(s) 513
BfmI CTRYAG 1 cut(s) 20
BisI GCNGC 1 cut(s) 550
BlsI GCNGC 1 cut(s) 551
BmcAI AGTACT 1 cut(s) 69
Bme1390I CCNGG 5 cut(s) 115, 247, 396, 411, 610
BmeT110I CYCGRG 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 78, 106, 175
BmrFI CCNGG 5 cut(s) 115, 247, 396, 411, 610
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 452
BpuMI CCSGG 3 cut(s) 115, 247, 411
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 5 cut(s) 231, 246, 394, 505, 608
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 114, 139, 543
Bse1I ACTGG 2 cut(s) 75, 391
BseBI CCWGG 2 cut(s) 396, 610
BseDI CCNNGG 5 cut(s) 231, 246, 394, 505, 608
BseGI GGATG 1 cut(s) 404
BseLI CCNNNNNNNGG 4 cut(s) 70, 114, 139, 543
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 75, 391
BseRI GAGGAG 2 cut(s) 181, 203
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 1 cut(s) 561
BsgI GTGCAG 1 cut(s) 568
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 115, 246, 411
BslFI GGGAC 2 cut(s) 193, 249
BslI CCNNNNNNNGG 4 cut(s) 70, 114, 139, 543
BsmAI GTCTC 1 cut(s) 513
BsmFI GGGAC 2 cut(s) 193, 249
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 513
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 3 cut(s) 107, 129, 411
BspACI CCGC 2 cut(s) 228, 266
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 78, 106, 175
BspMAI CTGCAG 1 cut(s) 24
BspT107I GGYRCC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 513
BsrI ACTGG 2 cut(s) 75, 391
BssECI CCNNGG 5 cut(s) 231, 246, 394, 505, 608
BssNI GRCGYC 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 231, 505
Bst2UI CCWGG 2 cut(s) 396, 610
Bst4CI ACNGT 2 cut(s) 81, 142
BstACI GRCGYC 1 cut(s) 258
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 3 cut(s) 262, 266, 284
BstDEI CTNAG 1 cut(s) 193
BstEII GGTNACC 1 cut(s) 389
BstF5I GGATG 1 cut(s) 404
BstMAI GTCTC 1 cut(s) 513
BstMWI GCNNNNNNNGC 3 cut(s) 288, 297, 472
BstNI CCWGG 2 cut(s) 396, 610
BstPI GGTNACC 1 cut(s) 389
BstSCI CCNGG 5 cut(s) 113, 245, 394, 409, 608
BstSFI CTRYAG 1 cut(s) 20
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 561
BstV2I GAAGAC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 156
BtsCI GGATG 1 cut(s) 404
Cac8I GCNNGC 3 cut(s) 262, 266, 284
CaiI CAGNNNCTG 1 cut(s) 94
CseI GACGC 1 cut(s) 266
Csp6I GTAC 1 cut(s) 68
CviAII CATG 3 cut(s) 201, 317, 368
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 1 cut(s) 193
DraI TTTAAA 1 cut(s) 459
EaeI YGGCCR 1 cut(s) 154
EciI GGCGGA 1 cut(s) 217
Eco130I CCWWGG 2 cut(s) 231, 505
Eco24I GRGCYC 2 cut(s) 107, 129
Eco31I GGTCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 389
EcoO65I GGTNACC 1 cut(s) 389
EcoRII CCWGG 2 cut(s) 394, 608
EcoT14I CCWWGG 2 cut(s) 231, 505
EcoT38I GRGCYC 2 cut(s) 107, 129
ErhI CCWWGG 2 cut(s) 231, 505
FaeI CATG 3 cut(s) 204, 320, 371
FaiI YATR 7 cut(s) 45, 110, 202, 318, 342, 369, 526
FaqI GGGAC 2 cut(s) 193, 249
FatI CATG 3 cut(s) 200, 316, 367
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 550
FokI GGATG 1 cut(s) 411
FriOI GRGCYC 2 cut(s) 107, 129
Fsp4HI GCNGC 1 cut(s) 550
GluI GCNGC 1 cut(s) 550
HaeIII GGCC 1 cut(s) 156
HapII CCGG 3 cut(s) 115, 246, 411
HgaI GACGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 3 cut(s) 204, 320, 371
HinfI GANTC 2 cut(s) 26, 237
HpaII CCGG 3 cut(s) 115, 246, 411
HphI GGTGA 2 cut(s) 154, 401
Hpy188III TCNNGA 2 cut(s) 51, 469
Hpy99I CGWCG 3 cut(s) 142, 188, 260
HpyCH4III ACNGT 2 cut(s) 81, 142
HpyCH4IV ACGT 1 cut(s) 119
HpyCH4V TGCA 4 cut(s) 22, 291, 528, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 288, 297, 472
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 119
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 3 cut(s) 204, 320, 371
LmnI GCTCC 3 cut(s) 85, 110, 434
Lsp1109I GCAGC 1 cut(s) 561
LweI GCATC 1 cut(s) 310
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 3 cut(s) 196, 343, 389
MboII GAAGA 6 cut(s) 214, 362, 368, 464, 522, 596
MfeI CAATTG 2 cut(s) 36, 443
MhlI GDGCHC 3 cut(s) 107, 129, 411
MluCI AATT 4 cut(s) 36, 423, 443, 539
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 63
MseI TTAA 2 cut(s) 458, 483
MspI CCGG 3 cut(s) 115, 246, 411
MspR9I CCNGG 5 cut(s) 115, 247, 396, 411, 610
MunI CAATTG 2 cut(s) 36, 443
MvaI CCWGG 2 cut(s) 396, 610
MwoI GCNNNNNNNGC 3 cut(s) 288, 297, 472
NciI CCSGG 3 cut(s) 115, 247, 411
NlaIII CATG 3 cut(s) 204, 320, 371
NlaIV GGNNCC 3 cut(s) 78, 106, 175
NmuCI GTSAC 3 cut(s) 196, 343, 389
PfeI GAWTC 1 cut(s) 26
PflFI GACNNNGTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 1 cut(s) 551
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PshBI ATTAAT 1 cut(s) 483
Psp6I CCWGG 2 cut(s) 394, 608
PspEI GGTNACC 1 cut(s) 389
PspGI CCWGG 2 cut(s) 394, 608
PspN4I GGNNCC 3 cut(s) 78, 106, 175
PstI CTGCAG 1 cut(s) 24
PstNI CAGNNNCTG 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SaqAI TTAA 2 cut(s) 458, 483
SatI GCNGC 1 cut(s) 550
ScaI AGTACT 1 cut(s) 69
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 5 cut(s) 115, 247, 396, 411, 610
SduI GDGCHC 3 cut(s) 107, 129, 411
SetI ASST 8 cut(s) 122, 150, 183, 288, 477, 525, 548, 554
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 36, 423, 443, 539
SsiI CCGC 2 cut(s) 228, 266
StyD4I CCNGG 5 cut(s) 113, 245, 394, 409, 608
StyI CCWWGG 2 cut(s) 231, 505
TaaI ACNGT 2 cut(s) 81, 142
TaiI ACGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 129, 137, 597
TasI AATT 4 cut(s) 36, 423, 443, 539
TatI WGTACW 1 cut(s) 67
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 2 cut(s) 458, 483
Tru9I TTAA 2 cut(s) 458, 483
TseFI GTSAC 3 cut(s) 196, 343, 389
TseI GCWGC 1 cut(s) 549
Tsp45I GTSAC 3 cut(s) 196, 343, 389
TspDTI ATGAA 2 cut(s) 151, 501
TspGWI ACGGA 1 cut(s) 576
Tth111I GACNNNGTC 1 cut(s) 182
VspI ATTAAT 1 cut(s) 483
XapI RAATTY 1 cut(s) 423
ZrmI AGTACT 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.