Rmu_sc0018899.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0018899.1
OG0014531
Physical Location & Seq
Forward (+)
17318 .. 17825
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0018899.1_g000004.1.cds

Sequence Viewer

Length: 420 bp
atgtcagaaaacaaagccagaacgatcaagctgttctgcccatcggtgccgagcacagcccgagtactggtggcaccgttggagcagaggctggacttgggctccatagcccggacttttgggctccacccgtcgacggtgaagctcaacggccacttcatcagcagaggaaccgacctcgtcgcctcctcagtcacatggaagtccctcctctctttcttctctgccaagggactctccaccggggaaaacgacgccaacccgcttgttgttgatggcaagctctgcaaagtcggcaacaagcgtagaggacatgatgctgtgaagactattgggtatgggactgaagatgaagatagtaagcatagtaaaaagacgaggacaggtgacccaggtaaacaagtttggtccttgatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.04

Weight (kDa)

9.78

Isoelectric Point (pI)

27.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 46, 73
AccI GTMKAC 1 cut(s) 134
AciI CCGC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 151
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 67, 111, 136
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 3 cut(s) 31, 145, 283
AluI AGCT 3 cut(s) 31, 145, 283
Alw21I GWGCWC 1 cut(s) 56
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 151
AspS9I GGNCC 1 cut(s) 408
AsuC2I CCSGG 2 cut(s) 112, 244
AsuHPI GGTGA 2 cut(s) 151, 398
AvaI CYCGRG 1 cut(s) 60
AvaII GGWCC 1 cut(s) 408
BanI GGYRCC 2 cut(s) 46, 73
BanII GRGCYC 2 cut(s) 104, 126
BbsI GAAGAC 1 cut(s) 332
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 2 cut(s) 49, 269
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 2 cut(s) 112, 244
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 3 cut(s) 112, 244, 393
Bme18I GGWCC 1 cut(s) 408
BmeT110I CYCGRG 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 408
BmiI GGNNCC 5 cut(s) 48, 75, 103, 125, 172
BmrFI CCNGG 3 cut(s) 112, 244, 393
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 332
BpuMI CCSGG 2 cut(s) 112, 244
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 228, 243, 391
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 111, 136
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 228, 243, 391
BseLI CCNNNNNNNGG 3 cut(s) 67, 111, 136
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 178, 200
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 2 cut(s) 46, 73
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 112, 243
BslFI GGGAC 3 cut(s) 190, 246, 355
BslI CCNNNNNNNGG 3 cut(s) 67, 111, 136
BsmFI GGGAC 3 cut(s) 190, 246, 355
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 3 cut(s) 56, 104, 126
Bsp143I GATC 2 cut(s) 24, 414
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 203
BspLI GGNNCC 5 cut(s) 48, 75, 103, 125, 172
BspT107I GGYRCC 2 cut(s) 46, 73
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 228, 243, 391
BssMI GATC 2 cut(s) 24, 414
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 78, 139
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 1 cut(s) 190
BstEII GGTNACC 1 cut(s) 386
BstKTI GATC 2 cut(s) 27, 417
BstMBI GATC 2 cut(s) 24, 414
BstMWI GCNNNNNNNGC 2 cut(s) 285, 294
BstNI CCWGG 1 cut(s) 393
BstPI GGTNACC 1 cut(s) 386
BstSCI CCNGG 3 cut(s) 110, 242, 391
BstV2I GAAGAC 1 cut(s) 332
BsuRI GGCC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 408
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 65
CviAII CATG 2 cut(s) 198, 314
CviQI GTAC 1 cut(s) 65
DdeI CTNAG 1 cut(s) 190
DpnI GATC 2 cut(s) 26, 416
DpnII GATC 2 cut(s) 24, 414
EaeI YGGCCR 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 104, 126
Eco47I GGWCC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 60
Eco91I GGTNACC 1 cut(s) 386
EcoO65I GGTNACC 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 104, 126
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 2 cut(s) 201, 317
FaiI YATR 5 cut(s) 107, 199, 315, 339, 366
FaqI GGGAC 3 cut(s) 190, 246, 355
FatI CATG 2 cut(s) 197, 313
FauI CCCGC 1 cut(s) 270
FblI GTMKAC 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 104, 126
HaeIII GGCC 1 cut(s) 153
HapII CCGG 2 cut(s) 112, 243
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 2 cut(s) 201, 317
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 1 cut(s) 234
HpaII CCGG 2 cut(s) 112, 243
HphI GGTGA 2 cut(s) 151, 398
Hpy166II GTNNAC 2 cut(s) 135, 398
Hpy188I TCNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 135, 398
Hpy99I CGWCG 4 cut(s) 136, 139, 185, 257
HpyCH4III ACNGT 2 cut(s) 78, 139
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 294
HpyF3I CTNAG 1 cut(s) 190
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 2 cut(s) 201, 317
Kzo9I GATC 2 cut(s) 24, 414
LmnI GCTCC 3 cut(s) 82, 107, 129
LpnPI CCDG 8 cut(s) 31, 53, 77, 125, 256, 369, 378, 405
LweI GCATC 1 cut(s) 307
MaeIII GTNAC 2 cut(s) 193, 386
MalI GATC 2 cut(s) 26, 416
MboI GATC 2 cut(s) 24, 414
MboII GAAGA 4 cut(s) 211, 337, 359, 365
MhlI GDGCHC 3 cut(s) 56, 104, 126
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 9 cut(s) 81, 161, 188, 196, 199, 218, 221, 302, 372
MspI CCGG 2 cut(s) 112, 243
MspR9I CCNGG 3 cut(s) 112, 244, 393
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 2 cut(s) 285, 294
NciI CCSGG 2 cut(s) 112, 244
NdeII GATC 2 cut(s) 24, 414
NlaIII CATG 2 cut(s) 201, 317
NlaIV GGNNCC 5 cut(s) 48, 75, 103, 125, 172
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 2 cut(s) 193, 386
PflFI GACNNNGTC 1 cut(s) 179
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
Psp6I CCWGG 1 cut(s) 391
PspEI GGTNACC 1 cut(s) 386
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 5 cut(s) 48, 75, 103, 125, 172
PspPI GGNCC 1 cut(s) 408
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 1 cut(s) 66
RsaNI GTAC 1 cut(s) 65
SalI GTCGAC 1 cut(s) 133
Sau3AI GATC 2 cut(s) 24, 414
Sau96I GGNCC 1 cut(s) 408
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 3 cut(s) 112, 244, 393
SduI GDGCHC 3 cut(s) 56, 104, 126
SetI ASST 6 cut(s) 33, 147, 180, 285, 388, 397
SfaNI GCATC 1 cut(s) 307
SgrDI CGTCGACG 1 cut(s) 133
SinI GGWCC 1 cut(s) 408
SsiI CCGC 1 cut(s) 263
StyD4I CCNGG 3 cut(s) 110, 242, 391
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 78, 139
TaqI TCGA 1 cut(s) 134
TatI WGTACW 1 cut(s) 64
TseFI GTSAC 2 cut(s) 193, 386
Tsp45I GTSAC 2 cut(s) 193, 386
TspDTI ATGAA 2 cut(s) 148, 366
Tth111I GACNNNGTC 1 cut(s) 179
VpaK11BI GGWCC 1 cut(s) 408
XmiI GTMKAC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.