Rh6AG275500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014531
Physical Location & Seq
Reverse (-)
47002590 .. 47003522
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG275500.1

Sequence Viewer

Length: 504 bp
ATGTCAGAAAACAAAGCCAGAACGATCAAGCTGTTCTGCCCATCGGTTCTGAGCACAGCCCGAGTACTGGTGGCACCGTTGGAGCAGAGGCTGGACTTGGGCTCCATAGCCCGGACGTTTGGGCTCGACCCATCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGAACCGACCTCGTCGCCTCCTCAGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCCGCCAAGGGACTCTCCACCGGGGAAAACGACGCCAACCCGCTTGTTGTTGATGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGACATGATGCTGTAAAGACTATTGGGTATGTGACTGAAGATGAAGATAGTAAGCATAGTAAAAAGACGAGGACAGGTGATCCAGGATGTGGAGTGCCCAGCTACAATGGAATTTGCTCCAAGAGAAACCAATTGCCGGAAGACTTAAACTTGCTCAAGAAGCTAAAAATTAATGAAACTAACCCCGGTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.06

Weight (kDa)

9.46

Isoelectric Point (pI)

25.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014531)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07150
fragaria_vesca FvH4_2g18740 FvH4_2g18740
malus_domestica MD05G1173200.v1.1
prunus_persica Prupe.8G200700_v2.0.a1
pyrus_communis pycom05g16000
rosa_chinensis RchiOBHm_Chr6g0284361
rosa_laevigata RLG00000012747
rosa_multiflora Rmu_sc0002698.1_g000002 Rmu_sc0018899.1_g000004
rosa_roxburghii Rroxscaffold_7G00184720
rosa_rugosa Rorug06G0163000
rosa_samantha Rh6AG275500 Rh6BG276100 Rh6CG277900 Rh6DG270700
rosa_wichuraiana Rw6G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 73
AccB7I CCANNNNNTGG 1 cut(s) 398
AciI CCGC 2 cut(s) 225, 263
AclWI GGATC 1 cut(s) 383
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 2 cut(s) 66, 499
AfiI CCNNNNNNNGG 5 cut(s) 67, 111, 136, 398, 445
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 5 cut(s) 31, 145, 283, 411, 472
AluI AGCT 5 cut(s) 31, 145, 283, 411, 472
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 1 cut(s) 383
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 60
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 1 cut(s) 480
AsuC2I CCSGG 3 cut(s) 112, 244, 495
AsuHPI GGTGA 2 cut(s) 151, 398
AvaI CYCGRG 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 408
BanI GGYRCC 1 cut(s) 73
BanII GRGCYC 2 cut(s) 104, 126
BbsI GAAGAC 1 cut(s) 456
Bbv12I GWGCWC 1 cut(s) 56
BccI CCATC 3 cut(s) 49, 139, 269
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 1 cut(s) 393
BcnI CCSGG 3 cut(s) 112, 244, 495
BmcAI AGTACT 1 cut(s) 66
Bme1390I CCNGG 4 cut(s) 112, 244, 393, 495
BmeT110I CYCGRG 1 cut(s) 60
BmiI GGNNCC 3 cut(s) 75, 103, 172
BmrFI CCNGG 4 cut(s) 112, 244, 393, 495
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 449
BpuMI CCSGG 3 cut(s) 112, 244, 495
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 3 cut(s) 228, 243, 493
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 5 cut(s) 67, 111, 136, 398, 445
Bse1I ACTGG 1 cut(s) 72
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 3 cut(s) 228, 243, 493
BseGI GGATG 1 cut(s) 401
BseLI CCNNNNNNNGG 5 cut(s) 67, 111, 136, 398, 445
BseMII CTCAG 2 cut(s) 41, 204
BseNI ACTGG 1 cut(s) 72
BseRI GAGGAG 2 cut(s) 178, 200
BseSI GKGCMC 1 cut(s) 408
BseYI CCCAGC 1 cut(s) 407
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 73
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 60
BsiSI CCGG 4 cut(s) 112, 243, 446, 495
BslFI GGGAC 2 cut(s) 190, 246
BslI CCNNNNNNNGG 5 cut(s) 67, 111, 136, 398, 445
BsmFI GGGAC 2 cut(s) 190, 246
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 60
Bsp1286I GDGCHC 4 cut(s) 56, 104, 126, 408
Bsp143I GATC 2 cut(s) 24, 388
BspACI CCGC 2 cut(s) 225, 263
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 2 cut(s) 42, 203
BspLI GGNNCC 3 cut(s) 75, 103, 172
BspPI GGATC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 73
BsrI ACTGG 1 cut(s) 72
BssECI CCNNGG 3 cut(s) 228, 243, 493
BssMI GATC 2 cut(s) 24, 388
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 78, 139
BstACI GRCGYC 1 cut(s) 255
BstAPI GCANNNNNTGC 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 281
BstDEI CTNAG 2 cut(s) 50, 190
BstF5I GGATG 1 cut(s) 401
BstKTI GATC 2 cut(s) 27, 391
BstMBI GATC 2 cut(s) 24, 388
BstMWI GCNNNNNNNGC 3 cut(s) 285, 294, 469
BstNI CCWGG 1 cut(s) 393
BstSCI CCNGG 4 cut(s) 110, 242, 391, 493
BstSLI GKGCMC 1 cut(s) 408
BstV2I GAAGAC 1 cut(s) 456
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 401
Cac8I GCNNGC 1 cut(s) 281
CaiI CAGNNNCTG 1 cut(s) 91
CseI GACGC 1 cut(s) 263
Csp6I GTAC 2 cut(s) 65, 498
CviAII CATG 3 cut(s) 198, 314, 501
CviQI GTAC 2 cut(s) 65, 498
DdeI CTNAG 2 cut(s) 50, 190
DpnI GATC 2 cut(s) 26, 390
DpnII GATC 2 cut(s) 24, 388
EaeI YGGCCR 1 cut(s) 151
EciI GGCGGA 1 cut(s) 214
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 2 cut(s) 104, 126
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 2 cut(s) 104, 126
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 3 cut(s) 201, 317, 504
FaiI YATR 6 cut(s) 107, 199, 315, 339, 366, 502
FaqI GGGAC 2 cut(s) 190, 246
FatI CATG 3 cut(s) 197, 313, 500
FauI CCCGC 1 cut(s) 270
FokI GGATG 1 cut(s) 408
FriOI GRGCYC 2 cut(s) 104, 126
GsaI CCCAGC 1 cut(s) 411
HaeIII GGCC 1 cut(s) 153
HapII CCGG 4 cut(s) 112, 243, 446, 495
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 3 cut(s) 201, 317, 504
HinfI GANTC 1 cut(s) 234
HpaII CCGG 4 cut(s) 112, 243, 446, 495
HphI GGTGA 2 cut(s) 151, 398
Hpy188I TCNGA 2 cut(s) 7, 51
Hpy188III TCNNGA 1 cut(s) 466
Hpy99I CGWCG 3 cut(s) 139, 185, 257
HpyCH4III ACNGT 2 cut(s) 78, 139
HpyCH4IV ACGT 1 cut(s) 116
HpyCH4V TGCA 1 cut(s) 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 285, 294, 469
HpyF3I CTNAG 2 cut(s) 50, 190
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 3 cut(s) 201, 317, 504
Kzo9I GATC 2 cut(s) 24, 388
LmnI GCTCC 3 cut(s) 82, 107, 431
LweI GCATC 1 cut(s) 307
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 193, 340
MalI GATC 2 cut(s) 26, 390
MboI GATC 2 cut(s) 24, 388
MboII GAAGA 4 cut(s) 211, 359, 365, 461
MfeI CAATTG 1 cut(s) 440
MhlI GDGCHC 4 cut(s) 56, 104, 126, 408
MluCI AATT 3 cut(s) 420, 440, 477
MlyI GAGTC 1 cut(s) 228
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 9 cut(s) 81, 161, 188, 196, 199, 218, 221, 302, 372
MseI TTAA 2 cut(s) 455, 480
MspI CCGG 4 cut(s) 112, 243, 446, 495
MspR9I CCNGG 4 cut(s) 112, 244, 393, 495
MunI CAATTG 1 cut(s) 440
MvaI CCWGG 1 cut(s) 393
MwoI GCNNNNNNNGC 3 cut(s) 285, 294, 469
NciI CCSGG 3 cut(s) 112, 244, 495
NdeII GATC 2 cut(s) 24, 388
NlaIII CATG 3 cut(s) 201, 317, 504
NlaIV GGNNCC 3 cut(s) 75, 103, 172
NmuCI GTSAC 2 cut(s) 193, 340
PflFI GACNNNGTC 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 398
PfoI TCCNGGA 1 cut(s) 391
PleI GAGTC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 228
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 3 cut(s) 75, 103, 172
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 179
RsaI GTAC 2 cut(s) 66, 499
RsaNI GTAC 2 cut(s) 65, 498
SaqAI TTAA 2 cut(s) 455, 480
Sau3AI GATC 2 cut(s) 24, 388
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 1 cut(s) 228
ScrFI CCNGG 4 cut(s) 112, 244, 393, 495
SduI GDGCHC 4 cut(s) 56, 104, 126, 408
SetI ASST 8 cut(s) 33, 119, 147, 180, 285, 388, 413, 474
SfaNI GCATC 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 3 cut(s) 420, 440, 477
SsiI CCGC 2 cut(s) 225, 263
StyD4I CCNGG 4 cut(s) 110, 242, 391, 493
StyI CCWWGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 78, 139
TaiI ACGT 1 cut(s) 119
TaqI TCGA 2 cut(s) 126, 134
TasI AATT 3 cut(s) 420, 440, 477
TatI WGTACW 1 cut(s) 64
Tru1I TTAA 2 cut(s) 455, 480
Tru9I TTAA 2 cut(s) 455, 480
TseFI GTSAC 2 cut(s) 193, 340
Tsp45I GTSAC 2 cut(s) 193, 340
TspDTI ATGAA 3 cut(s) 148, 366, 498
Tth111I GACNNNGTC 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 398
VspI ATTAAT 1 cut(s) 480
XapI RAATTY 1 cut(s) 420
ZrmI AGTACT 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.