Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Reverse (-)

2357907 .. 2360549

Gene Structure 2643 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTTACAGGCGTGGCTTCCGCCATGGCGGAGCGGTTAAAGGAAGACGGAAACAATTGCTTTAAGAAAGAACGTTTTGGTGCTGCCATTGATGCTTATACCGAGGCAATAGCTTTGTCTCCAAATGTTCCTGCTTATTGGACCAATCGAGCACTTTGCCACATGAAGCGAAAGGATTGGACTAAGGTTGAAGAGGATTGTCGCAAAGCTATTCAGCTTGTCCACAATTCCGTCAAGGCACACTACATGCTAGGACTTGCATTATTGCAGAAGAAAGAATTTACTAATGGAGTCAAAGAATTGCAAAGGGCTTTAGATCTTGGAAGATGCTCGAATCCAACAGGATATATGGTAGAAGAAATATGGGAAGAGCTTTCTAAAGCAAAATACATGGAGTGGGAACTGGTTTCTGCAATGCGGTCATGGGAACTGAATAGTTTGAAGGAAACTTGTGAGGCTGCTCTTAATCAACAACGTGCTTTAGATATGTCTCGAACAGAAGAGTCCTCAGACGAAGCATATACTGCCCATACTGAGCGTTTGAAAGCTCTTGAACGAGTGTTTAAGAAAGCTGCAGAAGAAGATAAACCAACTGAGGTGCCAGATTATTTATGTTGCAATATAACTCTTGAGATTTTCCGAGATCCTGTAATTTCTCCAAGTGGGGTTACATATGAAAGAGCAGCAATCCTTGAACATCTCAAGAAGGTGGGGAAGTTTGATCCTATAACTCGTGAAAAAATCGACCCGGCTAATCTCGTTCCAAATCTGGCTATCAAAGAGGCAGTGGCAGCATATCTAGAAAAACACGTCTGGGCTTACAAGATGGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_2 TPR_8 U-box

Protein Analysis

278

Amino Acids

31.66

Weight (kDa)

6.15

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	13 - 83	9.2e-06	Serine/threonine-protein kinase BSK1-like, TPR repeats
U-box	PF04564	200 - 272	6.6e-28	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	4 cut(s)	21, 29, 34, 418
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	2 cut(s)	638, 716
AcsI	RAATTY	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	5 cut(s)	191, 442, 544, 554, 695
AjiI	CACGTC	1 cut(s)	811
AluBI	AGCT	6 cut(s)	113, 209, 217, 373, 548, 572
AluI	AGCT	6 cut(s)	113, 209, 217, 373, 548, 572
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	2 cut(s)	123, 495
AlwI	GGATC	2 cut(s)	638, 716
ApeKI	GCWGC	5 cut(s)	83, 458, 572, 683, 791
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	749
AvaII	GGWCC	1 cut(s)	141
BanI	GGYRCC	1 cut(s)	598
BauI	CACGAG	1 cut(s)	732
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	5 cut(s)	70, 445, 559, 695, 803
BccI	CCATC	1 cut(s)	820
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	2 cut(s)	123, 495
BfaI	CTAG	2 cut(s)	251, 800
BfmI	CTRYAG	1 cut(s)	573
BglII	AGATCT	1 cut(s)	316
BisI	GCNGC	5 cut(s)	84, 459, 573, 684, 792
BlsI	GCNGC	5 cut(s)	85, 460, 574, 685, 793
Bme1390I	CCNGG	1 cut(s)	749
Bme18I	GGWCC	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	1 cut(s)	749
BmsI	GCATC	2 cut(s)	82, 317
BpiI	GAAGAC	1 cut(s)	51
BpuEI	CTTGAG	2 cut(s)	650, 686
BpuMI	CCSGG	1 cut(s)	749
BsaJI	CCNNGG	2 cut(s)	24, 102
Bse1I	ACTGG	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	420
BseDI	CCNNGG	2 cut(s)	24, 102
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	3 cut(s)	522, 525, 585
BseNI	ACTGG	1 cut(s)	408
BseXI	GCAGC	5 cut(s)	70, 445, 559, 695, 803
BshNI	GGYRCC	1 cut(s)	598
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	749
BsmAI	GTCTC	2 cut(s)	123, 495
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	316, 643, 721
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	21, 29, 34, 418
BspCNI	CTCAG	3 cut(s)	521, 526, 586
BspLI	GGNNCC	1 cut(s)	600
BspMAI	CTGCAG	1 cut(s)	577
BspPI	GGATC	2 cut(s)	638, 716
BspQI	GCTCTTC	1 cut(s)	363
BspT107I	GGYRCC	1 cut(s)	598
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	408
BssECI	CCNNGG	2 cut(s)	24, 102
BssMI	GATC	3 cut(s)	316, 643, 721
BssSI	CACGAG	1 cut(s)	732
BssT1I	CCWWGG	1 cut(s)	24
Bst2BI	CACGAG	1 cut(s)	732
Bst6I	CTCTTC	3 cut(s)	186, 363, 495
BstAPI	GCANNNNNTGC	1 cut(s)	524
BstDEI	CTNAG	4 cut(s)	183, 508, 534, 594
BstDSI	CCRYGG	1 cut(s)	24
BstKTI	GATC	3 cut(s)	319, 646, 724
BstMAI	GTCTC	2 cut(s)	123, 495
BstMBI	GATC	3 cut(s)	316, 643, 721
BstMWI	GCNNNNNNNGC	3 cut(s)	92, 524, 791
BstNSI	RCATGY	1 cut(s)	250
BstSCI	CCNGG	1 cut(s)	747
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	5 cut(s)	70, 445, 559, 695, 803
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	2 cut(s)	316, 643
BstYI	RGATCY	2 cut(s)	316, 643
BtgI	CCRYGG	1 cut(s)	24
BtrI	CACGTC	1 cut(s)	811
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	1 cut(s)	792
Cfr13I	GGNCC	1 cut(s)	141
CviAII	CATG	5 cut(s)	25, 163, 247, 391, 423
DdeI	CTNAG	4 cut(s)	183, 508, 534, 594
DpnI	GATC	3 cut(s)	318, 645, 723
DpnII	GATC	3 cut(s)	316, 643, 721
Eam1104I	CTCTTC	3 cut(s)	186, 363, 495
EarI	CTCTTC	3 cut(s)	186, 363, 495
EciI	GGCGGA	2 cut(s)	10, 44
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	28, 166, 250, 394, 426
FatI	CATG	5 cut(s)	24, 162, 246, 390, 422
FauNDI	CATATG	1 cut(s)	673
Fnu4HI	GCNGC	5 cut(s)	84, 459, 573, 684, 792
Fsp4HI	GCNGC	5 cut(s)	84, 459, 573, 684, 792
FspBI	CTAG	2 cut(s)	251, 800
GluI	GCNGC	5 cut(s)	84, 459, 573, 684, 792
HapII	CCGG	1 cut(s)	749
Hin1II	CATG	5 cut(s)	28, 166, 250, 394, 426
HinfI	GANTC	3 cut(s)	291, 334, 503
HpaII	CCGG	1 cut(s)	749
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	511, 641
Hpy188III	TCNNGA	6 cut(s)	492, 551, 629, 703, 734, 800
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	436, 700
HpyCH4IV	ACGT	3 cut(s)	73, 475, 810
HpyCH4V	TGCA	6 cut(s)	260, 268, 304, 413, 575, 618
HpyF10VI	GCNNNNNNNGC	3 cut(s)	92, 524, 791
HpyF3I	CTNAG	4 cut(s)	183, 508, 534, 594
HpySE526I	ACGT	3 cut(s)	73, 475, 810
Hsp92II	CATG	5 cut(s)	28, 166, 250, 394, 426
Kzo9I	GATC	3 cut(s)	316, 643, 721
LguI	GCTCTTC	1 cut(s)	363
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	8 cut(s)	144, 327, 389, 615, 660, 755, 762, 799
Lsp1109I	GCAGC	5 cut(s)	70, 445, 559, 695, 803
LweI	GCATC	2 cut(s)	82, 317
MaeI	CTAG	2 cut(s)	251, 800
MaeII	ACGT	3 cut(s)	73, 475, 810
MaeIII	GTNAC	2 cut(s)	4, 667
MalI	GATC	3 cut(s)	318, 645, 723
MbiI	CCGCTC	1 cut(s)	34
MboI	GATC	3 cut(s)	316, 643, 721
MboII	GAAGA	9 cut(s)	56, 203, 283, 336, 368, 380, 512, 590, 593
MfeI	CAATTG	1 cut(s)	55
MflI	RGATCY	2 cut(s)	316, 643
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	5 cut(s)	55, 226, 278, 299, 651
MlyI	GAGTC	2 cut(s)	300, 512
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	6 cut(s)	97, 187, 448, 517, 589, 775
MseI	TTAA	4 cut(s)	38, 63, 465, 564
MspI	CCGG	1 cut(s)	749
MspR9I	CCNGG	1 cut(s)	749
MunI	CAATTG	1 cut(s)	55
MwoI	GCNNNNNNNGC	3 cut(s)	92, 524, 791
NciI	CCSGG	1 cut(s)	749
NcoI	CCATGG	1 cut(s)	24
NdeI	CATATG	1 cut(s)	673
NdeII	GATC	3 cut(s)	316, 643, 721
NlaIII	CATG	5 cut(s)	28, 166, 250, 394, 426
NlaIV	GGNNCC	1 cut(s)	600
NspI	RCATGY	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	334
PkrI	GCNGC	5 cut(s)	85, 460, 574, 685, 793
PleI	GAGTC	2 cut(s)	299, 511
PpsI	GAGTC	2 cut(s)	299, 511
Psp1406I	AACGTT	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	1 cut(s)	141
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	2 cut(s)	316, 643
SapI	GCTCTTC	1 cut(s)	363
SaqAI	TTAA	4 cut(s)	38, 63, 465, 564
SatI	GCNGC	5 cut(s)	84, 459, 573, 684, 792
Sau3AI	GATC	3 cut(s)	316, 643, 721
Sau96I	GGNCC	1 cut(s)	141
SchI	GAGTC	2 cut(s)	300, 512
ScrFI	CCNGG	1 cut(s)	749
SduI	GDGCHC	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	82, 317
SfcI	CTRYAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	141
SmlI	CTYRAG	2 cut(s)	629, 701
SmoI	CTYRAG	2 cut(s)	629, 701
Sse9I	AATT	5 cut(s)	55, 226, 278, 299, 651
SsiI	CCGC	4 cut(s)	21, 29, 34, 418
SspMI	CTAG	2 cut(s)	251, 800
StyD4I	CCNGG	1 cut(s)	747
StyI	CCWWGG	1 cut(s)	24
TaiI	ACGT	3 cut(s)	76, 478, 813
TaqI	TCGA	4 cut(s)	148, 332, 493, 744
TasI	AATT	5 cut(s)	55, 226, 278, 299, 651
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	4 cut(s)	38, 63, 465, 564
Tru9I	TTAA	4 cut(s)	38, 63, 465, 564
TscAI	CASTG	1 cut(s)	792
TseI	GCWGC	5 cut(s)	83, 458, 572, 683, 791
TspDTI	ATGAA	2 cut(s)	179, 690
TspGWI	ACGGA	2 cut(s)	63, 220
TspRI	CASTG	1 cut(s)	792
VpaK11BI	GGWCC	1 cut(s)	141
XapI	RAATTY	1 cut(s)	278
XbaI	TCTAGA	1 cut(s)	799
XceI	RCATGY	1 cut(s)	250
XspI	CTAG	2 cut(s)	251, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.