Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004959.1

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Reverse (-)

94702 .. 98146

Gene Structure 3445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004959.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atgggtcaaaccggggcattggatagggcggagaagctccggaaggacggcaacacctacttcaaaaggggtaaatacttggccgccatcgatgcctacactgaggcaatcacactgtgccctaaagtccttgttaattataccaatcgtgctcagtgtcatcgcgttcttaaggattggaccagagtcgaagaagattccaggaaagctattcagctcgacagtgattgggtcaagggccactattatctggggcttgcgctactgcagaagcaagaatatcctgaaggagttaaggaattggagagggctttggatcttgggagagttgctgatcctaagggttatatggtagaagacatatggcaggagcttgcaaaggcaaaatacagggagtgggaagaggcatcaagtaaacgtgcatgggaattgcaaagcttgaaagaagcttgtgaaagtgctctcagagagacacatgatgcttttcagatggaagggtttctggatgaagatggtactacccatatgaaacagttagaggctttaggaagagtgtttgaaaaagctgcagaagctgacacagcaagtgaggtgcctgattatttatgttgtaatatctcacttgatatatttcgtgatcctgtaattacaccaagtggtgttacatatgagagatcagtgatcctggaccatcttgagaaggtgggtaagtttgatcctgttactcgtgagccagttgaaccgtcgcagctaataccaaactttgccataaaagaagcagtccaagcttatttaaaagaacatggctgggcctatagaacgtcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

275

Amino Acids

31.49

Weight (kDa)

5.26

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	2 cut(s)	29, 84
AclWI	GGATC	5 cut(s)	324, 329, 632, 676, 710
AcoI	YGGCCR	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	306
AdeI	CACNNNGTG	2 cut(s)	117, 656
AfaI	GTAC	1 cut(s)	517
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	4 cut(s)	64, 442, 560, 740
AjnI	CCWGG	2 cut(s)	200, 684
Alw21I	GWGCWC	2 cut(s)	154, 463
Alw26I	GTCTC	1 cut(s)	464
AlwI	GGATC	5 cut(s)	324, 329, 632, 676, 710
AlwNI	CAGNNNCTG	1 cut(s)	575
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	3 cut(s)	81, 238, 810
ApeKI	GCWGC	2 cut(s)	566, 748
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	262
AspS9I	GGNCC	4 cut(s)	180, 238, 688, 810
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	2 cut(s)	180, 688
AxyI	CCTNAGG	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	726
BbsI	GAAGAC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	154, 463
BbvI	GCAGC	2 cut(s)	553, 760
BccI	CCATC	4 cut(s)	95, 484, 506, 699
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	202, 686
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	464
BfmI	CTRYAG	3 cut(s)	266, 567, 814
BfrI	CTTAAG	1 cut(s)	170
BisI	GCNGC	3 cut(s)	84, 567, 749
BlsI	GCNGC	3 cut(s)	85, 568, 750
Bme1390I	CCNGG	3 cut(s)	13, 202, 686
Bme18I	GGWCC	2 cut(s)	180, 688
BmgT120I	GGNCC	4 cut(s)	180, 238, 688, 810
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	3 cut(s)	13, 202, 686
BmsI	GCATC	3 cut(s)	82, 416, 469
BoxI	GACNNNNGTC	1 cut(s)	185
BpiI	GAAGAC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	12
BsaWI	WCCGGW	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	734
Bse21I	CCTNAGG	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	2 cut(s)	202, 686
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	93, 167, 478
BseNI	ACTGG	1 cut(s)	734
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	553, 760
BseYI	CCCAGC	1 cut(s)	807
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	3 cut(s)	83, 240, 812
BshNI	GGYRCC	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	154, 463
BsiSI	CCGG	2 cut(s)	12, 40
BsmAI	GTCTC	1 cut(s)	464
BsnI	GGCC	3 cut(s)	83, 240, 812
Bsp1286I	GDGCHC	3 cut(s)	122, 154, 463
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
BspACI	CCGC	2 cut(s)	29, 84
BspANI	GGCC	3 cut(s)	83, 240, 812
BspCNI	CTCAG	3 cut(s)	94, 166, 477
BspDI	ATCGAT	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	39
BspFNI	CGCG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	2 cut(s)	270, 571
BspPI	GGATC	5 cut(s)	324, 329, 632, 676, 710
BspT107I	GGYRCC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
BssSI	CACGAG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	726
Bst2UI	CCWGG	2 cut(s)	202, 686
Bst4CI	ACNGT	4 cut(s)	117, 224, 534, 744
Bst6I	CTCTTC	2 cut(s)	396, 544
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	258, 375
BstDEI	CTNAG	4 cut(s)	102, 153, 339, 464
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	262
BstKTI	GATC	6 cut(s)	319, 337, 640, 677, 684, 718
BstMAI	GTCTC	1 cut(s)	464
BstMBI	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 572, 581, 785
BstNI	CCWGG	2 cut(s)	202, 686
BstPAI	GACNNNNGTC	1 cut(s)	185
BstSCI	CCNGG	3 cut(s)	11, 200, 684
BstSFI	CTRYAG	3 cut(s)	266, 567, 814
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	553, 760
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	83, 240, 812
BsuTUI	ATCGAT	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	5 cut(s)	99, 113, 161, 229, 684
Cac8I	GCNNGC	2 cut(s)	258, 375
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	1 cut(s)	262
Cfr13I	GGNCC	4 cut(s)	180, 238, 688, 810
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	3 cut(s)	423, 476, 803
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	4 cut(s)	102, 153, 339, 464
DpnI	GATC	6 cut(s)	318, 336, 639, 676, 683, 717
DpnII	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
DraI	TTTAAA	1 cut(s)	795
DraIII	CACNNNGTG	2 cut(s)	117, 656
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	396, 544
EarI	CTCTTC	2 cut(s)	396, 544
EciI	GGCGGA	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	180, 688
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	339
EcoRII	CCWGG	2 cut(s)	200, 684
FaeI	CATG	3 cut(s)	426, 479, 806
FatI	CATG	3 cut(s)	422, 475, 802
FauNDI	CATATG	3 cut(s)	362, 525, 667
Fnu4HI	GCNGC	3 cut(s)	84, 567, 749
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	84, 567, 749
GlaI	GCGC	1 cut(s)	261
GluI	GCNGC	3 cut(s)	84, 567, 749
GsaI	CCCAGC	1 cut(s)	811
HaeIII	GGCC	3 cut(s)	83, 240, 812
HapII	CCGG	2 cut(s)	12, 40
HhaI	GCGC	1 cut(s)	262
Hin1II	CATG	3 cut(s)	426, 479, 806
Hin6I	GCGC	1 cut(s)	260
HinP1I	GCGC	1 cut(s)	260
HindIII	AAGCTT	3 cut(s)	436, 447, 786
HinfI	GANTC	2 cut(s)	186, 197
HpaII	CCGG	2 cut(s)	12, 40
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188I	TCNGA	2 cut(s)	467, 489
Hpy188III	TCNNGA	6 cut(s)	40, 284, 503, 635, 695, 728
Hpy8I	GTNNAC	1 cut(s)	416
Hpy99I	CGWCG	2 cut(s)	748, 826
HpyAV	CCTTC	4 cut(s)	37, 281, 488, 694
HpyCH4III	ACNGT	4 cut(s)	117, 224, 534, 744
HpyCH4IV	ACGT	2 cut(s)	418, 821
HpyCH4V	TGCA	5 cut(s)	268, 377, 422, 433, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 572, 581, 785
HpyF3I	CTNAG	4 cut(s)	102, 153, 339, 464
HpySE526I	ACGT	2 cut(s)	418, 821
Hsp92II	CATG	3 cut(s)	426, 479, 806
HspAI	GCGC	1 cut(s)	260
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
LmnI	GCTCC	2 cut(s)	42, 370
Lsp1109I	GCAGC	2 cut(s)	553, 760
LweI	GCATC	3 cut(s)	82, 416, 469
MaeII	ACGT	2 cut(s)	418, 821
MaeIII	GTNAC	2 cut(s)	661, 721
MalI	GATC	6 cut(s)	318, 336, 639, 676, 683, 717
MboI	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
MboII	GAAGA	6 cut(s)	203, 206, 368, 413, 521, 561
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	3 cut(s)	122, 154, 463
MluCI	AATT	4 cut(s)	136, 299, 428, 645
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	5 cut(s)	97, 300, 397, 532, 583
MroI	TCCGGA	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	4 cut(s)	135, 171, 294, 794
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	2 cut(s)	12, 40
MspR9I	CCNGG	3 cut(s)	13, 202, 686
MvaI	CCWGG	2 cut(s)	202, 686
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	4 cut(s)	92, 572, 581, 785
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	3 cut(s)	362, 525, 667
NdeII	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
NlaIII	CATG	3 cut(s)	426, 479, 806
NlaIV	GGNNCC	1 cut(s)	594
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	1 cut(s)	197
PfoI	TCCNGGA	2 cut(s)	200, 684
PkrI	GCNGC	3 cut(s)	85, 568, 750
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
PshAI	GACNNNNGTC	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	200, 684
PspFI	CCCAGC	1 cut(s)	807
PspGI	CCWGG	2 cut(s)	200, 684
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	4 cut(s)	180, 238, 688, 810
PstI	CTGCAG	2 cut(s)	270, 571
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SaqAI	TTAA	4 cut(s)	135, 171, 294, 794
SatI	GCNGC	3 cut(s)	84, 567, 749
Sau3AI	GATC	6 cut(s)	316, 334, 637, 674, 681, 715
Sau96I	GGNCC	4 cut(s)	180, 238, 688, 810
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	3 cut(s)	13, 202, 686
SduI	GDGCHC	3 cut(s)	122, 154, 463
SfaNI	GCATC	3 cut(s)	82, 416, 469
SfcI	CTRYAG	3 cut(s)	266, 567, 814
SinI	GGWCC	2 cut(s)	180, 688
SmlI	CTYRAG	2 cut(s)	170, 695
SmoI	CTYRAG	2 cut(s)	170, 695
Sse9I	AATT	4 cut(s)	136, 299, 428, 645
SsiI	CCGC	2 cut(s)	29, 84
StyD4I	CCNGG	3 cut(s)	11, 200, 684
TaaI	ACNGT	4 cut(s)	117, 224, 534, 744
TaiI	ACGT	2 cut(s)	421, 824
TaqI	TCGA	3 cut(s)	90, 189, 219
TasI	AATT	4 cut(s)	136, 299, 428, 645
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	4 cut(s)	135, 171, 294, 794
Tru9I	TTAA	4 cut(s)	135, 171, 294, 794
TscAI	CASTG	5 cut(s)	106, 120, 161, 229, 684
TseI	GCWGC	2 cut(s)	566, 748
TspDTI	ATGAA	2 cut(s)	522, 542
TspRI	CASTG	5 cut(s)	106, 120, 161, 229, 684
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	180, 688
XmnI	GAANNNNTTC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.