Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

48694284 .. 48698145

Gene Structure 3862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG269100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGGTCAAACCGGGGCATTGGATAGGGCGGAGAAGCTCCGGAAAGACGGCAACACCTACTTCAATAAGGGAAAATACTCGGCCGCCATCGATGCCTACACGGAGGCAATCACGCTGTGCCCCAAAGTGCTTGCTAATTATACCAATCGTGCTCTGTGTCATCGCGCTCGTAATGATTGGACCAGAGTAGAAGAAGATTCCAGGAAAGCTATTCAGCTCGACAGTGATTGGGTCAAGGCTTTGGATCTTGGGAGAGGTGCCGATCCCAAGGGTTATATGGTAGAAGAGATATGGCAAGCGCTTGCAAAGGCAAAATACATGGAGTGGGAAGAGGCATCAAGTAGCCGCGCATGGGAATTGCAAAGATTGAAAGAAGCTTGTGAAAGTGCTCTCAAAGAGAAACATGATGCTTTTCAGATGGAAGGGTTTCTGGATGAAGCTGGTACTACCAATATGAGACGGTTAGAGGCTTTAGGAAGAGTGTTTGAAAAAGCTGCAGAAGCTGACACAGCAAGTGAGGTGCCTGATTATTTATGTTGTAATATCTCACTTGATATATTTCGTGATCCTGTAATTACACCAAGTGGTGTTACATATGAGAGATCAGTGATCCTGAACCATCTTGAGAAGGTGGGTAAGTTTGATCCTGTCACTCGTGAGCCAGTTGAACCGTCGCAGCTAATACCAAACTTTGCCATAAAAGAAGCAGTCCAAGCTTATTTAAAAGAACATGGTTGGGCCTATAGAACGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

251

Amino Acids

28.56

Weight (kDa)

5.44

Isoelectric Point (pI)

30.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	17 - 42	1.1e-06	Tetratricopeptide repeat
TPR_11	PF13414	17 - 42	9.8e-06	TPR repeat
U-box	PF04564	174 - 246	4.6e-28	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	257, 520
AccII	CGCG	2 cut(s)	165, 348
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	3 cut(s)	29, 84, 346
AclWI	GGATC	5 cut(s)	252, 257, 560, 604, 638
AcoI	YGGCCR	1 cut(s)	81
AdeI	CACNNNGTG	2 cut(s)	117, 584
AfaI	GTAC	1 cut(s)	445
AfeI	AGCGCT	1 cut(s)	300
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	64, 370, 488, 668
AjnI	CCWGG	1 cut(s)	200
AluBI	AGCT	9 cut(s)	37, 209, 217, 377, 440, 494, 503, 679, 716
AluI	AGCT	9 cut(s)	37, 209, 217, 377, 440, 494, 503, 679, 716
Alw21I	GWGCWC	2 cut(s)	154, 391
Alw26I	GTCTC	1 cut(s)	451
AlwI	GGATC	5 cut(s)	252, 257, 560, 604, 638
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	39
Aor51HI	AGCGCT	1 cut(s)	300
AoxI	GGCC	2 cut(s)	81, 738
ApeKI	GCWGC	2 cut(s)	494, 676
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	3 cut(s)	167, 301, 350
AspS9I	GGNCC	2 cut(s)	180, 738
AsuC2I	CCSGG	1 cut(s)	13
AvaII	GGWCC	1 cut(s)	180
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	257, 520
BauI	CACGAG	1 cut(s)	654
Bbv12I	GWGCWC	2 cut(s)	154, 391
BbvI	GCAGC	2 cut(s)	481, 688
BccI	CCATC	3 cut(s)	95, 412, 627
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	1 cut(s)	202
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	451
BfmI	CTRYAG	2 cut(s)	495, 742
BfoI	RGCGCY	1 cut(s)	302
BisI	GCNGC	4 cut(s)	84, 346, 495, 677
BlsI	GCNGC	4 cut(s)	85, 347, 496, 678
Bme1390I	CCNGG	2 cut(s)	13, 202
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	180, 738
BmiI	GGNNCC	2 cut(s)	259, 522
BmrFI	CCNGG	2 cut(s)	13, 202
BmsI	GCATC	3 cut(s)	82, 344, 397
BpuEI	CTTGAG	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	13
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	12, 267
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	662
BseAI	TCCGGA	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	202
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	12, 267
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	662
BseSI	GKGCMC	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	481, 688
Bsh1236I	CGCG	2 cut(s)	165, 348
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 740
BshNI	GGYRCC	2 cut(s)	257, 520
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	84
BsiHKAI	GWGCWC	2 cut(s)	154, 391
BsiSI	CCGG	2 cut(s)	12, 40
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	451
BsmBI	CGTCTC	1 cut(s)	451
BsnI	GGCC	2 cut(s)	83, 740
Bsp1286I	GDGCHC	3 cut(s)	122, 154, 391
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
BspACI	CCGC	3 cut(s)	29, 84, 346
BspANI	GGCC	2 cut(s)	83, 740
BspDI	ATCGAT	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	165, 348
BspLI	GGNNCC	2 cut(s)	259, 522
BspMAI	CTGCAG	1 cut(s)	499
BspPI	GGATC	5 cut(s)	252, 257, 560, 604, 638
BspT107I	GGYRCC	2 cut(s)	257, 520
BsrI	ACTGG	1 cut(s)	662
BssECI	CCNNGG	2 cut(s)	12, 267
BssMI	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
BssSI	CACGAG	1 cut(s)	654
BssT1I	CCWWGG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	654
Bst2UI	CCWGG	1 cut(s)	202
Bst4CI	ACNGT	3 cut(s)	224, 462, 672
Bst6I	CTCTTC	3 cut(s)	279, 324, 472
BstC8I	GCNNGC	3 cut(s)	132, 297, 303
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	2 cut(s)	165, 348
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	3 cut(s)	167, 301, 350
BstKTI	GATC	6 cut(s)	247, 265, 568, 605, 612, 646
BstMAI	GTCTC	1 cut(s)	451
BstMBI	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 500, 509, 713
BstNI	CCWGG	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	11, 200
BstSFI	CTRYAG	2 cut(s)	495, 742
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	2 cut(s)	165, 348
BstV1I	GCAGC	2 cut(s)	481, 688
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	83, 740
BsuTUI	ATCGAT	1 cut(s)	90
BtgZI	GCGATG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	2 cut(s)	229, 612
Cac8I	GCNNGC	3 cut(s)	132, 297, 303
CaiI	CAGNNNCTG	1 cut(s)	503
CfoI	GCGC	3 cut(s)	167, 301, 350
Cfr13I	GGNCC	2 cut(s)	180, 738
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	4 cut(s)	319, 351, 404, 731
CviQI	GTAC	1 cut(s)	444
DpnI	GATC	6 cut(s)	246, 264, 567, 604, 611, 645
DpnII	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
DraI	TTTAAA	1 cut(s)	723
DraIII	CACNNNGTG	2 cut(s)	117, 584
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	3 cut(s)	279, 324, 472
EarI	CTCTTC	3 cut(s)	279, 324, 472
EciI	GGCGGA	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	180
Eco47III	AGCGCT	1 cut(s)	300
Eco52I	CGGCCG	1 cut(s)	81
EcoRII	CCWGG	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	1 cut(s)	451
FaeI	CATG	4 cut(s)	322, 354, 407, 734
FatI	CATG	4 cut(s)	318, 350, 403, 730
FauNDI	CATATG	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	84, 346, 495, 677
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	4 cut(s)	84, 346, 495, 677
GlaI	GCGC	3 cut(s)	166, 300, 349
GluI	GCNGC	4 cut(s)	84, 346, 495, 677
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	83, 740
HapII	CCGG	2 cut(s)	12, 40
HhaI	GCGC	3 cut(s)	167, 301, 350
Hin1II	CATG	4 cut(s)	322, 354, 407, 734
Hin6I	GCGC	3 cut(s)	165, 299, 348
HinP1I	GCGC	3 cut(s)	165, 299, 348
HindIII	AAGCTT	2 cut(s)	375, 714
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	12, 40
Hpy188I	TCNGA	1 cut(s)	417
Hpy188III	TCNNGA	6 cut(s)	40, 431, 563, 613, 623, 656
Hpy99I	CGWCG	1 cut(s)	676
HpyAV	CCTTC	2 cut(s)	416, 622
HpyCH4III	ACNGT	3 cut(s)	224, 462, 672
HpyCH4IV	ACGT	1 cut(s)	749
HpyCH4V	TGCA	3 cut(s)	305, 361, 497
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 500, 509, 713
HpySE526I	ACGT	1 cut(s)	749
Hsp92II	CATG	4 cut(s)	322, 354, 407, 734
HspAI	GCGC	3 cut(s)	165, 299, 348
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	2 cut(s)	481, 688
LweI	GCATC	3 cut(s)	82, 344, 397
MaeII	ACGT	1 cut(s)	749
MaeIII	GTNAC	2 cut(s)	589, 649
MalI	GATC	6 cut(s)	246, 264, 567, 604, 611, 645
MboI	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
MboII	GAAGA	5 cut(s)	203, 206, 296, 341, 489
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	3 cut(s)	122, 154, 391
MluCI	AATT	3 cut(s)	136, 356, 573
MnlI	CCTC	5 cut(s)	97, 248, 325, 460, 511
MroI	TCCGGA	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	1 cut(s)	722
MspI	CCGG	2 cut(s)	12, 40
MspR9I	CCNGG	2 cut(s)	13, 202
MvaI	CCWGG	1 cut(s)	202
MvnI	CGCG	2 cut(s)	165, 348
MwoI	GCNNNNNNNGC	4 cut(s)	92, 500, 509, 713
NciI	CCSGG	1 cut(s)	13
NdeI	CATATG	1 cut(s)	595
NdeII	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
NlaIII	CATG	4 cut(s)	322, 354, 407, 734
NlaIV	GGNNCC	2 cut(s)	259, 522
NmeAIII	GCCGAG	1 cut(s)	59
NmuCI	GTSAC	1 cut(s)	649
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	197
PfoI	TCCNGGA	1 cut(s)	200
PkrI	GCNGC	4 cut(s)	85, 347, 496, 678
Psp6I	CCWGG	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	200
PspN4I	GGNNCC	2 cut(s)	259, 522
PspPI	GGNCC	2 cut(s)	180, 738
PstI	CTGCAG	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	4 cut(s)	84, 346, 495, 677
Sau3AI	GATC	6 cut(s)	244, 262, 565, 602, 609, 643
Sau96I	GGNCC	2 cut(s)	180, 738
ScrFI	CCNGG	2 cut(s)	13, 202
SduI	GDGCHC	3 cut(s)	122, 154, 391
SfaNI	GCATC	3 cut(s)	82, 344, 397
SfcI	CTRYAG	2 cut(s)	495, 742
SinI	GGWCC	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	3 cut(s)	136, 356, 573
SsiI	CCGC	3 cut(s)	29, 84, 346
StyD4I	CCNGG	2 cut(s)	11, 200
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	224, 462, 672
TaiI	ACGT	1 cut(s)	752
TaqI	TCGA	2 cut(s)	90, 219
TasI	AATT	3 cut(s)	136, 356, 573
TauI	GCSGC	2 cut(s)	86, 348
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TscAI	CASTG	2 cut(s)	229, 612
TseFI	GTSAC	1 cut(s)	649
TseI	GCWGC	2 cut(s)	494, 676
Tsp45I	GTSAC	1 cut(s)	649
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	116
TspRI	CASTG	2 cut(s)	229, 612
VpaK11BI	GGWCC	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	274
XmnI	GAANNNNTTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.