Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

24219498 .. 24222728

Gene Structure 3231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1154400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGCCGAGTCTCGCATTGTCGACGGCAGAGAAACTCAGGAAGGACGGCAACACTTACTTCAAGAAAGATCGATTCGCGGCCGCCATCGATGCCTATACTGAGGCAATCACTCTGTGCCCTAATGTTCCTGTTTATTGGACGAATCGCGCTCTCTGCCATCGGAAGCGTAATGATTGGACAAAAGTCGAAGAGGATTCTCGGAAAGCTATTCAGCTTGATCACAATTCAGTTAAGGGTAACTATATGCTGGGGCTTGCTTTACTGCAGAAGCAAGAGTATGCTGAGGGAGTTAAGGCACTCGAGAGGGCTTTGGATCTTGGGAGGGGTGCTAATCCGAAAGGTTATATGGTAGAGGAAATCTGGCAGGAGCTTTCAAAAGCAAAGTACATGGAGTGGGAGGATACATCGAGCAAACGATCATGGGAATTGCAAAACTTGAAAGCAGACTGCGAGACTGCTCTTAAAGAGAAACATGACGCTCTTCAAGTTGAAGGGTTTTTGGATGAAGCTGCTACTACCCATATGAAACAGTTAGAGGCGTTAGGAAGAGTGTTTGAGAAGGCTGCAGAAGCTGACACGCCAAGTGAGGTGCCGGATTACCTGTGTTGCAAAATCACGCTTGATATATTTCGTGATCCTGTGATTACTCCAAGTGGGGTTACATATGAGAGATCAGTGATCCATCACCATCTTGAGAAGGTTGGCAGGTTCGATCCAATCACACGAGAGCTGCTTGATCAATCAGAGCTAATACCAAACTTTGCCATAAAAGAAGCAGTTCAAGCATATTTACAACAGCATGGTTGGGCCTACGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

275

Amino Acids

31.22

Weight (kDa)

5.69

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	17 - 42	9.4e-06	Tetratricopeptide repeat
U-box	PF04564	198 - 270	3.3e-28	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	699
AccB1I	GGYRCC	2 cut(s)	4, 592
AccI	GTMKAC	1 cut(s)	23
AccII	CGCG	2 cut(s)	80, 150
AciI	CCGC	2 cut(s)	80, 84
AclWI	GGATC	4 cut(s)	324, 632, 676, 710
AcoI	YGGCCR	1 cut(s)	81
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	6 cut(s)	64, 378, 442, 488, 494, 785
AluBI	AGCT	7 cut(s)	209, 217, 373, 512, 575, 733, 751
AluI	AGCT	7 cut(s)	209, 217, 373, 512, 575, 733, 751
Alw26I	GTCTC	2 cut(s)	17, 449
AlwI	GGATC	4 cut(s)	324, 632, 676, 710
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	302
AoxI	GGCC	2 cut(s)	81, 810
ApeKI	GCWGC	3 cut(s)	512, 566, 733
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	2 cut(s)	7, 152
AspS9I	GGNCC	1 cut(s)	810
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	4, 592
BauI	CACGAG	1 cut(s)	726
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	499, 553, 720
BccI	CCATC	4 cut(s)	95, 168, 693, 699
BceAI	ACGGC	2 cut(s)	42, 64
BciVI	GTATCC	1 cut(s)	397
BclI	TGATCA	2 cut(s)	220, 739
BcoDI	GTCTC	2 cut(s)	17, 449
BfmI	CTRYAG	2 cut(s)	266, 567
BfoI	RGCGCY	1 cut(s)	8
BfuAI	ACCTGC	1 cut(s)	699
BfuI	GTATCC	1 cut(s)	397
BisI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
BlsI	GCNGC	5 cut(s)	82, 85, 514, 568, 735
BmeT110I	CYCGRG	1 cut(s)	302
BmgT120I	GGNCC	1 cut(s)	810
BmiI	GGNNCC	2 cut(s)	6, 594
BmsI	GCATC	1 cut(s)	82
BoxI	GACNNNNGTC	1 cut(s)	185
Bpu10I	CCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	716
Bsa29I	ATCGAT	2 cut(s)	73, 90
BsaHI	GRCGYC	1 cut(s)	5
BseCI	ATCGAT	2 cut(s)	73, 90
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	52, 93, 276
BseSI	GKGCMC	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	3 cut(s)	499, 553, 720
BseYI	CCCAGC	1 cut(s)	250
Bsh1236I	CGCG	2 cut(s)	80, 150
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 812
BshNI	GGYRCC	2 cut(s)	4, 592
BshVI	ATCGAT	2 cut(s)	73, 90
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	302
BsiSI	CCGG	1 cut(s)	596
BsmAI	GTCTC	2 cut(s)	17, 449
BsnI	GGCC	2 cut(s)	83, 812
BsoBI	CYCGRG	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
BspACI	CCGC	2 cut(s)	80, 84
BspANI	GGCC	2 cut(s)	83, 812
BspCNI	CTCAG	3 cut(s)	51, 94, 277
BspDI	ATCGAT	2 cut(s)	73, 90
BspFNI	CGCG	2 cut(s)	80, 150
BspLI	GGNNCC	2 cut(s)	6, 594
BspMAI	CTGCAG	2 cut(s)	270, 571
BspMI	ACCTGC	1 cut(s)	699
BspPI	GGATC	4 cut(s)	324, 632, 676, 710
BspQI	GCTCTTC	1 cut(s)	489
BspT107I	GGYRCC	2 cut(s)	4, 592
BssMI	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
BssNI	GRCGYC	1 cut(s)	5
BssSI	CACGAG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	726
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	3 cut(s)	186, 489, 544
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	38, 102, 285
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	80, 150
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 152
BstKTI	GATC	9 cut(s)	73, 223, 319, 422, 640, 677, 684, 718, 742
BstMAI	GTCTC	2 cut(s)	17, 449
BstMBI	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 156, 572, 785
BstPAI	GACNNNNGTC	1 cut(s)	185
BstSFI	CTRYAG	2 cut(s)	266, 567
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	2 cut(s)	80, 150
BstV1I	GCAGC	3 cut(s)	499, 553, 720
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	2 cut(s)	73, 90
BsuI	GTATCC	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	83, 812
BsuTUI	ATCGAT	2 cut(s)	73, 90
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	684
BveI	ACCTGC	1 cut(s)	699
Cac8I	GCNNGC	1 cut(s)	258
CaiI	CAGNNNCTG	1 cut(s)	575
CciNI	GCGGCCGC	1 cut(s)	81
CfoI	GCGC	2 cut(s)	7, 152
Cfr13I	GGNCC	1 cut(s)	810
ClaI	ATCGAT	2 cut(s)	73, 90
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	391, 423, 476, 803
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	3 cut(s)	38, 102, 285
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	9 cut(s)	72, 222, 318, 421, 639, 676, 683, 717, 741
DpnII	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
DraIII	CACNNNGTG	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	3 cut(s)	186, 489, 544
EarI	CTCTTC	3 cut(s)	186, 489, 544
EclXI	CGGCCG	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	302
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	4 cut(s)	394, 426, 479, 806
FatI	CATG	4 cut(s)	390, 422, 475, 802
FauNDI	CATATG	2 cut(s)	525, 667
FbaI	TGATCA	2 cut(s)	220, 739
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
GlaI	GCGC	2 cut(s)	6, 151
GluI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
GsaI	CCCAGC	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	83, 812
HapII	CCGG	1 cut(s)	596
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	7, 152
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	394, 426, 479, 806
Hin6I	GCGC	2 cut(s)	5, 150
HinP1I	GCGC	2 cut(s)	5, 150
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	4 cut(s)	10, 75, 145, 197
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	165, 204, 339, 748
Hpy188III	TCNNGA	5 cut(s)	40, 64, 304, 635, 695
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	37, 488, 556, 694
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4V	TGCA	4 cut(s)	268, 433, 569, 612
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 156, 572, 785
HpyF3I	CTNAG	3 cut(s)	38, 102, 285
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	394, 426, 479, 806
HspAI	GCGC	2 cut(s)	5, 150
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	2 cut(s)	220, 739
Kzo9I	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	25, 144, 236, 349, 353, 609, 617, 654, 694
Lsp1109I	GCAGC	3 cut(s)	499, 553, 720
LweI	GCATC	1 cut(s)	82
MaeIII	GTNAC	2 cut(s)	239, 661
MalI	GATC	9 cut(s)	72, 222, 318, 421, 639, 676, 683, 717, 741
MboI	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
MboII	GAAGA	3 cut(s)	203, 476, 561
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	226, 428
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	9 cut(s)	97, 187, 280, 300, 318, 349, 394, 532, 583
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	3 cut(s)	234, 294, 465
MspI	CCGG	1 cut(s)	596
MvnI	CGCG	2 cut(s)	80, 150
MwoI	GCNNNNNNNGC	4 cut(s)	92, 156, 572, 785
NarI	GGCGCC	1 cut(s)	5
NdeI	CATATG	2 cut(s)	525, 667
NdeII	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
NlaIII	CATG	4 cut(s)	394, 426, 479, 806
NlaIV	GGNNCC	2 cut(s)	6, 594
NmeAIII	GCCGAG	1 cut(s)	33
NotI	GCGGCCGC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	302
PciSI	GCTCTTC	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	3 cut(s)	75, 145, 197
PkrI	GCNGC	5 cut(s)	82, 85, 514, 568, 735
PleI	GAGTC	1 cut(s)	18
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	18
PshAI	GACNNNNGTC	1 cut(s)	185
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	2 cut(s)	6, 594
PspPI	GGNCC	1 cut(s)	810
PstI	CTGCAG	2 cut(s)	270, 571
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	3 cut(s)	234, 294, 465
SatI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
Sau3AI	GATC	9 cut(s)	70, 220, 316, 419, 637, 674, 681, 715, 739
Sau96I	GGNCC	1 cut(s)	810
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	2 cut(s)	266, 567
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	302
SmlI	CTYRAG	2 cut(s)	302, 695
SmoI	CTYRAG	2 cut(s)	302, 695
Sse9I	AATT	2 cut(s)	226, 428
SsiI	CCGC	2 cut(s)	80, 84
SspDI	GGCGCC	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	534
TaqI	TCGA	7 cut(s)	23, 73, 90, 189, 303, 410, 714
TasI	AATT	2 cut(s)	226, 428
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	2 cut(s)	83, 86
TfiI	GAWTC	3 cut(s)	75, 145, 197
Tru1I	TTAA	3 cut(s)	234, 294, 465
Tru9I	TTAA	3 cut(s)	234, 294, 465
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	3 cut(s)	512, 566, 733
TspDTI	ATGAA	2 cut(s)	522, 542
TspRI	CASTG	1 cut(s)	684
XhoI	CTCGAG	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	780

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.