Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

29358830 .. 29362225

Gene Structure 3396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1165100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGCCGAGTCTCGCATCGTCGACGGCGGAGAAACTCAAGAAGGACGGCAACACCTACTTCAAGAAAGAGCGATTCGCGGCCGCCATCGATGCGTATACTGAGGCAATCACTCTGTGCCCTAATGTTCCTGTTTATTTTACGAATCGCGCTCTCTGCCATCTCAAGCGTAATGATTGGAAGAAAGTCGAAGAGGATTCTCGGAGAGCTATTCAGCTTGATCATAACTCAGTTAAGGGTAACTATATATTGGGGCTTGCTTTACTACAGAAGCAAGAGTATGGCGAGGGAGTTAAGGCACTGGAGAGGGCTTTGGATCTTGGGAGGGGTGCCAATCTGAAAGATTATATGGTAGAGGAGATCTGGCAGGAGCTTTCAAAAGCAAAGTACATGGAGTGGGAGGAGACATCGAGCAAACGTTCATGGGAATTGCAAAATTTGAAAGAAGCTTGCGAGACTGCTCTCAAAGAGAAACATGACTCTTGTCAAATGGAAGGGTTTTTGGATGAAGCTGCTACCACACATAAGAAACAGTTAGAGGCGTTAGGAAGAGTGTTCGAGAAAGCTGCAGAAGCTGACACGCCTAGTGAGGTGCCGGATTACCTATGTTGCAAAATCACTCTTGACATATTTCGTGATCCTGTGATTACTCCAAGTGGGGCTACATATGAGAGATCAGTGATCCTTCACCATCTTGAGAAGGTTGGCAAGTTCGATCCAATCACTCGAGAGCCGCTTGATCAATCAGAGCTAATACCAAACTTTGCCTTAAAAGAAGCAGTTCAAGCATATTTACAAGAGCATGGTTGGGCCTACAGAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

275

Amino Acids

31.24

Weight (kDa)

5.64

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_1	PF00515	17 - 42	3.4e-06	Tetratricopeptide repeat
U-box	PF04564	198 - 270	7.7e-29	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	4, 329, 592
AccI	GTMKAC	2 cut(s)	23, 98
AccII	CGCG	2 cut(s)	80, 150
AciI	CCGC	4 cut(s)	29, 80, 84, 734
AclI	AACGTT	1 cut(s)	418
AclWI	GGATC	4 cut(s)	324, 632, 676, 710
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	436
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	64, 378, 442, 785
AluBI	AGCT	8 cut(s)	209, 217, 373, 449, 512, 566, 575, 751
AluI	AGCT	8 cut(s)	209, 217, 373, 449, 512, 566, 575, 751
Alw26I	GTCTC	3 cut(s)	17, 398, 449
AlwI	GGATC	4 cut(s)	324, 632, 676, 710
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	726
AoxI	GGCC	2 cut(s)	81, 810
ApeKI	GCWGC	2 cut(s)	512, 566
ApoI	RAATTY	1 cut(s)	436
Asp700I	GAANNNNTTC	1 cut(s)	780
AspLEI	GCGC	2 cut(s)	7, 152
AspS9I	GGNCC	1 cut(s)	810
AsuHPI	GGTGA	1 cut(s)	680
AvaI	CYCGRG	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	3 cut(s)	4, 329, 592
BbvI	GCAGC	2 cut(s)	499, 553
BccI	CCATC	3 cut(s)	95, 168, 699
BceAI	ACGGC	2 cut(s)	42, 64
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BclI	TGATCA	2 cut(s)	220, 739
BcoDI	GTCTC	3 cut(s)	17, 398, 449
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	3 cut(s)	266, 567, 814
BfoI	RGCGCY	1 cut(s)	8
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
BlsI	GCNGC	5 cut(s)	82, 85, 514, 568, 735
BmeT110I	CYCGRG	1 cut(s)	726
BmgT120I	GGNCC	1 cut(s)	810
BmiI	GGNNCC	3 cut(s)	6, 331, 594
BmsI	GCATC	2 cut(s)	26, 82
BoxI	GACNNNNGTC	1 cut(s)	483
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	3 cut(s)	23, 149, 716
Bsa29I	ATCGAT	1 cut(s)	90
BsaHI	GRCGYC	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	306
BseCI	ATCGAT	1 cut(s)	90
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	93, 243
BseNI	ACTGG	1 cut(s)	306
BseRI	GAGGAG	2 cut(s)	371, 416
BseSI	GKGCMC	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	499, 553
Bsh1236I	CGCG	2 cut(s)	80, 150
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 812
BshNI	GGYRCC	3 cut(s)	4, 329, 592
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	726
BsiSI	CCGG	1 cut(s)	596
BsmAI	GTCTC	3 cut(s)	17, 398, 449
BsnI	GGCC	2 cut(s)	83, 812
BsoBI	CYCGRG	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
BspACI	CCGC	4 cut(s)	29, 80, 84, 734
BspANI	GGCC	2 cut(s)	83, 812
BspCNI	CTCAG	2 cut(s)	94, 242
BspDI	ATCGAT	1 cut(s)	90
BspFNI	CGCG	2 cut(s)	80, 150
BspLI	GGNNCC	3 cut(s)	6, 331, 594
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	4 cut(s)	324, 632, 676, 710
BspT107I	GGYRCC	3 cut(s)	4, 329, 592
BsrI	ACTGG	1 cut(s)	306
BssMI	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
BssNAI	GTATAC	1 cut(s)	99
BssNI	GRCGYC	1 cut(s)	5
Bst1107I	GTATAC	1 cut(s)	99
Bst4CI	ACNGT	1 cut(s)	534
Bst6I	CTCTTC	2 cut(s)	186, 544
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	258, 451
BstDEI	CTNAG	2 cut(s)	102, 229
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	80, 150
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 152
BstKTI	GATC	8 cut(s)	223, 319, 363, 640, 677, 684, 718, 742
BstMAI	GTCTC	3 cut(s)	17, 398, 449
BstMBI	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 156, 572, 785, 818
BstPAI	GACNNNNGTC	1 cut(s)	483
BstSFI	CTRYAG	3 cut(s)	266, 567, 814
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	2 cut(s)	80, 150
BstV1I	GCAGC	2 cut(s)	499, 553
BstX2I	RGATCY	2 cut(s)	316, 360
BstYI	RGATCY	2 cut(s)	316, 360
BstZ17I	GTATAC	1 cut(s)	99
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	90
BsuRI	GGCC	2 cut(s)	83, 812
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	2 cut(s)	299, 684
Cac8I	GCNNGC	2 cut(s)	258, 451
CaiI	CAGNNNCTG	1 cut(s)	575
CciNI	GCGGCCGC	1 cut(s)	81
CfoI	GCGC	2 cut(s)	7, 152
Cfr13I	GGNCC	1 cut(s)	810
ClaI	ATCGAT	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	391, 423, 476, 803
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	102, 229
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	8 cut(s)	222, 318, 362, 639, 676, 683, 717, 741
DpnII	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
DraIII	CACNNNGTG	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	186, 544
EarI	CTCTTC	2 cut(s)	186, 544
EciI	GGCGGA	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	81
Eco52I	CGGCCG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	726
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
FaeI	CATG	4 cut(s)	394, 426, 479, 806
FatI	CATG	4 cut(s)	390, 422, 475, 802
FauNDI	CATATG	1 cut(s)	667
FbaI	TGATCA	2 cut(s)	220, 739
FblI	GTMKAC	2 cut(s)	23, 98
Fnu4HI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	2 cut(s)	6, 151
GluI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
GsuI	CTGGAG	1 cut(s)	323
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	83, 812
HapII	CCGG	1 cut(s)	596
HhaI	GCGC	2 cut(s)	7, 152
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	394, 426, 479, 806
Hin6I	GCGC	2 cut(s)	5, 150
HinP1I	GCGC	2 cut(s)	5, 150
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	5 cut(s)	10, 75, 145, 197, 479
HpaII	CCGG	1 cut(s)	596
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	24, 99
Hpy188I	TCNGA	3 cut(s)	204, 339, 748
Hpy188III	TCNNGA	7 cut(s)	40, 64, 559, 623, 635, 695, 728
Hpy8I	GTNNAC	2 cut(s)	24, 99
Hpy99I	CGWCG	2 cut(s)	25, 28
HpyAV	CCTTC	4 cut(s)	37, 488, 694, 695
HpyCH4III	ACNGT	1 cut(s)	534
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	3 cut(s)	433, 569, 612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 156, 572, 785, 818
HpyF3I	CTNAG	2 cut(s)	102, 229
HpySE526I	ACGT	1 cut(s)	418
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	394, 426, 479, 806
HspAI	GCGC	2 cut(s)	5, 150
KasI	GGCGCC	1 cut(s)	4
Ksp22I	TGATCA	2 cut(s)	220, 739
Kzo9I	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	6 cut(s)	144, 287, 349, 353, 609, 654
Lsp1109I	GCAGC	2 cut(s)	499, 553
LweI	GCATC	2 cut(s)	26, 82
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	8 cut(s)	222, 318, 362, 639, 676, 683, 717, 741
MboI	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
MboII	GAAGA	3 cut(s)	193, 203, 561
MflI	RGATCY	2 cut(s)	316, 360
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	428, 436
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	19, 473
MnlI	CCTC	9 cut(s)	97, 187, 280, 300, 318, 349, 394, 532, 583
MroXI	GAANNNNTTC	1 cut(s)	780
MseI	TTAA	3 cut(s)	234, 294, 770
MspI	CCGG	1 cut(s)	596
MvnI	CGCG	2 cut(s)	80, 150
MwoI	GCNNNNNNNGC	5 cut(s)	92, 156, 572, 785, 818
NarI	GGCGCC	1 cut(s)	5
NdeI	CATATG	1 cut(s)	667
NdeII	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
NlaIII	CATG	4 cut(s)	394, 426, 479, 806
NlaIV	GGNNCC	3 cut(s)	6, 331, 594
NmeAIII	GCCGAG	1 cut(s)	33
NotI	GCGGCCGC	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	726
PdmI	GAANNNNTTC	1 cut(s)	780
PfeI	GAWTC	3 cut(s)	75, 145, 197
PkrI	GCNGC	5 cut(s)	82, 85, 514, 568, 735
PleI	GAGTC	2 cut(s)	18, 473
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	18, 473
PshAI	GACNNNNGTC	1 cut(s)	483
Psp1406I	AACGTT	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	6, 331, 594
PspPI	GGNCC	1 cut(s)	810
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	316, 360
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SalI	GTCGAC	1 cut(s)	22
SaqAI	TTAA	3 cut(s)	234, 294, 770
SatI	GCNGC	5 cut(s)	81, 84, 513, 567, 734
Sau3AI	GATC	8 cut(s)	220, 316, 360, 637, 674, 681, 715, 739
Sau96I	GGNCC	1 cut(s)	810
SchI	GAGTC	2 cut(s)	19, 473
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	2 cut(s)	26, 82
SfcI	CTRYAG	3 cut(s)	266, 567, 814
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	726
SgrDI	CGTCGACG	1 cut(s)	22
SlaI	CTCGAG	1 cut(s)	726
SmlI	CTYRAG	4 cut(s)	38, 164, 695, 726
SmoI	CTYRAG	4 cut(s)	38, 164, 695, 726
Sse9I	AATT	2 cut(s)	428, 436
SsiI	CCGC	4 cut(s)	29, 80, 84, 734
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	534
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	7 cut(s)	23, 90, 189, 410, 558, 714, 727
TasI	AATT	2 cut(s)	428, 436
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	3 cut(s)	83, 86, 736
TfiI	GAWTC	3 cut(s)	75, 145, 197
Tru1I	TTAA	3 cut(s)	234, 294, 770
Tru9I	TTAA	3 cut(s)	234, 294, 770
TscAI	CASTG	2 cut(s)	306, 684
TseI	GCWGC	2 cut(s)	512, 566
TspDTI	ATGAA	2 cut(s)	411, 522
TspRI	CASTG	2 cut(s)	306, 684
XapI	RAATTY	1 cut(s)	436
XhoI	CTCGAG	1 cut(s)	726
XmiI	GTMKAC	2 cut(s)	23, 98
XmnI	GAANNNNTTC	1 cut(s)	780
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.