Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

16788746 .. 16793219

Gene Structure 4474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13350.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGTACCTCCAAATATGCAGCAGTGTGTTGGACATTATCAAATCACATACAGAACCTTCTGAGTTTGCGGTAGCACCTCCAGGGACCTCTGAAACTTCTCCACCAAGAGGATCGATGAGCCAGAAGCCTGGACCACCGGATACACTACTCTCGTTGAAGAAAAACAAGTTGCAAACAAAAATCCAATTTAAAAGAAGTCACAACAAGTCTTTGCATTCTCAGACCCCCCTATGCGAAACGTCTCCGACTCCCTCTGAGCCTTTGAGGGTTTGCCTTTGCCTCTCTTCGTCTTCGTCTCCCTCCATTTCGCGCTTTCGCCCAGAAACTTCTCGAACTCTCCTCTTTCCCCTCCATTTCCTCTCTCCGCTGCCAAAACGTCGATTCGCCGCGCCCGCATTCGCTGAAAACACCATAAGAAACAATCAATTTGGGAAGAGGAAGGGGAGGACTGATATGGCGCCGAGTCTCGCATTGTCGACGGCAGAGAAACTCAGGAAGGACGGCAACACTTACTTCAAGAAAGATCGATTCGCGGCCGCCATCGATGCCTATACTGAGGTATTATTTTGTTTCTGCGATTCGCTCCTCTCTGATTGGACAAAAGTCGAAGAGGATTCTCGGAAAGCTATTCAGCTTGATCACAATTCAGTTAAGGGTAACTATATGCTGGGGCTTGCTTTACTGCAGAAGCAAGAGTATGCTGAGGGAGTTAAGGCACTTGAGAGGGCTTTGGATCTTGGGAGGGGTGCTAATCCGGAAGGTTATATGGTAGAGGAAATCTGGCAGGAGCTTTCAAAAGCAAAGTACATGGAGTGGGAGGATACATCGAGCAAACGATCATGGGAATTGCAAAACTTGAAAGAAGACTGTGAGACTGCTCTCAAAGAGAAACATGACGCTCTTCAAGTTGAAGGGTTTTTGGATGAAGTTGCTACTACCTATATGAAACAGTTAGAGGCGTTAGGAAGAGTGTTTGAGAAAGCTGCAGAAGCTGACACGCCAAGTGAGGTGCCGGATTACCTGTGTTGCAAAATCACGCTTGATATATTTCGTGATCCTGTGATTACTCCAAGTGGGGTCACATATGAGAGATCAGTGATCCGTCACCATCTTGAGAAGGTTGGCAAGTTCGATCCAATCACACGAGAGCCACTTGATCAATCAGAGCTAATACCAAACTTTGCCATAAAAGAAGCAGTTCAAGCATATATACAACAGCATGGTTGGGCCTACGGAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

414

Amino Acids

46.57

Weight (kDa)

6.54

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	457, 1009
AccI	GTMKAC	1 cut(s)	476
AccII	CGCG	3 cut(s)	310, 389, 533
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	6 cut(s)	68, 365, 387, 393, 533, 537
AclWI	GGATC	5 cut(s)	118, 741, 1049, 1093, 1127
AcoI	YGGCCR	1 cut(s)	534
AcyI	GRCGYC	1 cut(s)	458
AfaI	GTAC	2 cut(s)	5, 806
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	157, 517, 795, 859, 905, 911, 1202
AjnI	CCWGG	2 cut(s)	79, 127
AluBI	AGCT	6 cut(s)	626, 634, 790, 983, 992, 1168
AluI	AGCT	6 cut(s)	626, 634, 790, 983, 992, 1168
Alw26I	GTCTC	4 cut(s)	246, 300, 470, 866
AlwI	GGATC	5 cut(s)	118, 741, 1049, 1093, 1127
AlwNI	CAGNNNCTG	1 cut(s)	992
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	2 cut(s)	534, 1227
ApeKI	GCWGC	3 cut(s)	18, 367, 983
Asp700I	GAANNNNTTC	1 cut(s)	1197
AspLEI	GCGC	3 cut(s)	312, 391, 460
AspS9I	GGNCC	3 cut(s)	84, 131, 1227
AsuHPI	GGTGA	1 cut(s)	1097
AvaII	GGWCC	2 cut(s)	84, 131
BanI	GGYRCC	2 cut(s)	457, 1009
BauI	CACGAG	1 cut(s)	1143
BbsI	GAAGAC	2 cut(s)	282, 870
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	3 cut(s)	30, 354, 970
BccI	CCATC	2 cut(s)	548, 1116
BceAI	ACGGC	2 cut(s)	495, 517
BciT130I	CCWGG	2 cut(s)	81, 129
BciVI	GTATCC	2 cut(s)	133, 814
BclI	TGATCA	2 cut(s)	637, 1156
BcoDI	GTCTC	4 cut(s)	246, 300, 470, 866
BfmI	CTRYAG	2 cut(s)	683, 984
BfoI	RGCGCY	1 cut(s)	461
BfuI	GTATCC	2 cut(s)	133, 814
BisI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
BlsI	GCNGC	6 cut(s)	20, 369, 388, 535, 538, 985
Bme1390I	CCNGG	2 cut(s)	81, 129
Bme18I	GGWCC	2 cut(s)	84, 131
BmgT120I	GGNCC	3 cut(s)	84, 131, 1227
BmiI	GGNNCC	3 cut(s)	85, 459, 1011
BmrFI	CCNGG	2 cut(s)	81, 129
BmsI	GCATC	1 cut(s)	535
BoxI	GACNNNNGTC	1 cut(s)	602
BpiI	GAAGAC	2 cut(s)	282, 870
BpmI	CTGGAG	1 cut(s)	63
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	2 cut(s)	740, 1133
Bsa29I	ATCGAT	3 cut(s)	113, 526, 543
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	1 cut(s)	80
BsaWI	WCCGGW	2 cut(s)	136, 754
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
BseAI	TCCGGA	1 cut(s)	754
BseBI	CCWGG	2 cut(s)	81, 129
BseCI	ATCGAT	3 cut(s)	113, 526, 543
BseDI	CCNNGG	1 cut(s)	80
BseGI	GGATG	1 cut(s)	928
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMII	CTCAG	6 cut(s)	51, 233, 246, 505, 546, 693
BseRI	GAGGAG	2 cut(s)	329, 575
BseX3I	CGGCCG	1 cut(s)	534
BseXI	GCAGC	3 cut(s)	30, 354, 970
BseYI	CCCAGC	1 cut(s)	667
Bsh1236I	CGCG	3 cut(s)	310, 389, 533
Bsh1285I	CGRYCG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	536, 1229
BshNI	GGYRCC	2 cut(s)	457, 1009
BshVI	ATCGAT	3 cut(s)	113, 526, 543
BsiEI	CGRYCG	1 cut(s)	537
BsiSI	CCGG	3 cut(s)	137, 755, 1013
BslFI	GGGAC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	4 cut(s)	246, 300, 470, 866
BsmBI	CGTCTC	2 cut(s)	246, 300
BsmFI	GGGAC	1 cut(s)	97
BsmI	GAATGC	2 cut(s)	214, 395
BsnI	GGCC	2 cut(s)	536, 1229
Bsp13I	TCCGGA	1 cut(s)	754
BspACI	CCGC	6 cut(s)	68, 365, 387, 393, 533, 537
BspANI	GGCC	2 cut(s)	536, 1229
BspCNI	CTCAG	6 cut(s)	52, 232, 247, 504, 547, 694
BspDI	ATCGAT	3 cut(s)	113, 526, 543
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	3 cut(s)	310, 389, 533
BspLI	GGNNCC	3 cut(s)	85, 459, 1011
BspMAI	CTGCAG	2 cut(s)	687, 988
BspPI	GGATC	5 cut(s)	118, 741, 1049, 1093, 1127
BspQI	GCTCTTC	1 cut(s)	906
BspT107I	GGYRCC	2 cut(s)	457, 1009
BssECI	CCNNGG	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	458
BssSI	CACGAG	1 cut(s)	1143
Bst2BI	CACGAG	1 cut(s)	1143
Bst2UI	CCWGG	2 cut(s)	81, 129
Bst4CI	ACNGT	2 cut(s)	869, 951
Bst6I	CTCTTC	5 cut(s)	289, 428, 603, 906, 961
BstACI	GRCGYC	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	393, 675
BstDEI	CTNAG	6 cut(s)	60, 219, 255, 491, 555, 702
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	3 cut(s)	310, 389, 533
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	3 cut(s)	312, 391, 460
BstMAI	GTCTC	4 cut(s)	246, 300, 470, 866
BstMCI	CGRYCG	1 cut(s)	537
BstMWI	GCNNNNNNNGC	4 cut(s)	392, 545, 989, 1202
BstNI	CCWGG	2 cut(s)	81, 129
BstPAI	GACNNNNGTC	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	79, 127
BstSFI	CTRYAG	2 cut(s)	683, 984
BstUI	CGCG	3 cut(s)	310, 389, 533
BstV1I	GCAGC	3 cut(s)	30, 354, 970
BstV2I	GAAGAC	2 cut(s)	282, 870
BstX2I	RGATCY	1 cut(s)	733
BstXI	CCANNNNNNTGG	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	733
BstZI	CGGCCG	1 cut(s)	534
Bsu15I	ATCGAT	3 cut(s)	113, 526, 543
BsuI	GTATCC	2 cut(s)	133, 814
BsuRI	GGCC	2 cut(s)	536, 1229
BsuTUI	ATCGAT	3 cut(s)	113, 526, 543
BtsCI	GGATG	1 cut(s)	928
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	2 cut(s)	28, 1101
Cac8I	GCNNGC	2 cut(s)	393, 675
CaiI	CAGNNNCTG	1 cut(s)	992
CciNI	GCGGCCGC	1 cut(s)	534
CfoI	GCGC	3 cut(s)	312, 391, 460
Cfr13I	GGNCC	3 cut(s)	84, 131, 1227
ClaI	ATCGAT	3 cut(s)	113, 526, 543
CseI	GACGC	1 cut(s)	905
Csp6I	GTAC	2 cut(s)	4, 805
CviAII	CATG	4 cut(s)	808, 840, 893, 1220
CviQI	GTAC	2 cut(s)	4, 805
DdeI	CTNAG	6 cut(s)	60, 219, 255, 491, 555, 702
DinI	GGCGCC	1 cut(s)	459
DraI	TTTAAA	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	534
EagI	CGGCCG	1 cut(s)	534
Eam1104I	CTCTTC	5 cut(s)	289, 428, 603, 906, 961
EarI	CTCTTC	5 cut(s)	289, 428, 603, 906, 961
EclXI	CGGCCG	1 cut(s)	534
Eco47I	GGWCC	2 cut(s)	84, 131
Eco52I	CGGCCG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	2 cut(s)	79, 127
EgeI	GGCGCC	1 cut(s)	459
EheI	GGCGCC	1 cut(s)	459
Esp3I	CGTCTC	2 cut(s)	246, 300
FaeI	CATG	4 cut(s)	811, 843, 896, 1223
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	4 cut(s)	807, 839, 892, 1219
FauI	CCCGC	1 cut(s)	400
FauNDI	CATATG	1 cut(s)	1084
FbaI	TGATCA	2 cut(s)	637, 1156
FblI	GTMKAC	1 cut(s)	476
Fnu4HI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
FokI	GGATG	1 cut(s)	935
Fsp4HI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
GlaI	GCGC	3 cut(s)	311, 390, 459
GluI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
GsaI	CCCAGC	1 cut(s)	671
GsuI	CTGGAG	1 cut(s)	63
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	536, 1229
HapII	CCGG	3 cut(s)	137, 755, 1013
HgaI	GACGC	1 cut(s)	905
HhaI	GCGC	3 cut(s)	312, 391, 460
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	4 cut(s)	811, 843, 896, 1223
Hin6I	GCGC	3 cut(s)	310, 389, 458
HinP1I	GCGC	3 cut(s)	310, 389, 458
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	6 cut(s)	247, 381, 463, 528, 578, 614
HpaII	CCGG	3 cut(s)	137, 755, 1013
HphI	GGTGA	1 cut(s)	1097
Hpy166II	GTNNAC	1 cut(s)	477
Hpy188I	TCNGA	8 cut(s)	61, 91, 222, 246, 256, 592, 621, 1165
Hpy188III	TCNNGA	6 cut(s)	330, 493, 517, 755, 1052, 1112
Hpy8I	GTNNAC	1 cut(s)	477
Hpy99I	CGWCG	2 cut(s)	381, 481
HpyAV	CCTTC	6 cut(s)	66, 433, 490, 752, 905, 1111
HpyCH4III	ACNGT	2 cut(s)	869, 951
HpyCH4IV	ACGT	2 cut(s)	239, 376
HpyCH4V	TGCA	7 cut(s)	18, 172, 214, 685, 850, 986, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	392, 545, 989, 1202
HpyF3I	CTNAG	6 cut(s)	60, 219, 255, 491, 555, 702
HpySE526I	ACGT	2 cut(s)	239, 376
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	4 cut(s)	811, 843, 896, 1223
HspAI	GCGC	3 cut(s)	310, 389, 458
KasI	GGCGCC	1 cut(s)	457
Kpn2I	TCCGGA	1 cut(s)	754
Ksp22I	TGATCA	2 cut(s)	637, 1156
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	588, 787
Lsp1109I	GCAGC	3 cut(s)	30, 354, 970
LweI	GCATC	1 cut(s)	535
MaeII	ACGT	2 cut(s)	239, 376
MaeIII	GTNAC	4 cut(s)	197, 656, 1078, 1103
MboII	GAAGA	8 cut(s)	169, 276, 282, 445, 620, 875, 893, 978
MflI	RGATCY	1 cut(s)	733
MluCI	AATT	4 cut(s)	185, 425, 643, 845
Mly113I	GGCGCC	1 cut(s)	458
MlyI	GAGTC	2 cut(s)	241, 472
MmeI	TCCRAC	2 cut(s)	9, 269
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	1197
MseI	TTAA	3 cut(s)	189, 651, 711
MspA1I	CMGCKG	1 cut(s)	367
MspI	CCGG	3 cut(s)	137, 755, 1013
MspR9I	CCNGG	2 cut(s)	81, 129
Mva1269I	GAATGC	2 cut(s)	214, 395
MvaI	CCWGG	2 cut(s)	81, 129
MvnI	CGCG	3 cut(s)	310, 389, 533
MwoI	GCNNNNNNNGC	4 cut(s)	392, 545, 989, 1202
NarI	GGCGCC	1 cut(s)	458
NdeI	CATATG	1 cut(s)	1084
NlaIII	CATG	4 cut(s)	811, 843, 896, 1223
NlaIV	GGNNCC	3 cut(s)	85, 459, 1011
NmeAIII	GCCGAG	1 cut(s)	486
NmuCI	GTSAC	3 cut(s)	197, 1078, 1103
NotI	GCGGCCGC	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	906
PctI	GAATGC	2 cut(s)	214, 395
PdmI	GAANNNNTTC	1 cut(s)	1197
PfeI	GAWTC	4 cut(s)	381, 528, 578, 614
PkrI	GCNGC	6 cut(s)	20, 369, 388, 535, 538, 985
PleI	GAGTC	2 cut(s)	241, 471
PluTI	GGCGCC	1 cut(s)	461
PpsI	GAGTC	2 cut(s)	241, 471
PpuMI	RGGWCCY	1 cut(s)	84
PshAI	GACNNNNGTC	1 cut(s)	602
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	79, 127
PspFI	CCCAGC	1 cut(s)	667
PspGI	CCWGG	2 cut(s)	79, 127
PspN4I	GGNNCC	3 cut(s)	85, 459, 1011
PspPI	GGNCC	3 cut(s)	84, 131, 1227
PspPPI	RGGWCCY	1 cut(s)	84
PstI	CTGCAG	2 cut(s)	687, 988
PstNI	CAGNNNCTG	1 cut(s)	992
PsuI	RGATCY	1 cut(s)	733
RsaI	GTAC	2 cut(s)	5, 806
RsaNI	GTAC	2 cut(s)	4, 805
SalI	GTCGAC	1 cut(s)	475
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	3 cut(s)	189, 651, 711
SatI	GCNGC	6 cut(s)	19, 368, 387, 534, 537, 984
Sau96I	GGNCC	3 cut(s)	84, 131, 1227
SchI	GAGTC	2 cut(s)	241, 472
ScrFI	CCNGG	2 cut(s)	81, 129
SfaNI	GCATC	1 cut(s)	535
SfcI	CTRYAG	2 cut(s)	683, 984
SfoI	GGCGCC	1 cut(s)	459
SinI	GGWCC	2 cut(s)	84, 131
SmlI	CTYRAG	2 cut(s)	719, 1112
SmoI	CTYRAG	2 cut(s)	719, 1112
Sse9I	AATT	4 cut(s)	185, 425, 643, 845
SsiI	CCGC	6 cut(s)	68, 365, 387, 393, 533, 537
SspDI	GGCGCC	1 cut(s)	457
StyD4I	CCNGG	2 cut(s)	79, 127
TaaI	ACNGT	2 cut(s)	869, 951
TaiI	ACGT	2 cut(s)	242, 379
TaqI	TCGA	9 cut(s)	113, 331, 379, 476, 526, 543, 606, 827, 1131
TasI	AATT	4 cut(s)	185, 425, 643, 845
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	3 cut(s)	389, 536, 539
TfiI	GAWTC	4 cut(s)	381, 528, 578, 614
Tru1I	TTAA	3 cut(s)	189, 651, 711
Tru9I	TTAA	3 cut(s)	189, 651, 711
TscAI	CASTG	2 cut(s)	28, 1101
TseFI	GTSAC	3 cut(s)	197, 1078, 1103
TseI	GCWGC	3 cut(s)	18, 367, 983
Tsp45I	GTSAC	3 cut(s)	197, 1078, 1103
TspDTI	ATGAA	2 cut(s)	939, 959
TspGWI	ACGGA	1 cut(s)	1091
TspRI	CASTG	2 cut(s)	28, 1101
VpaK11BI	GGWCC	2 cut(s)	84, 131
XmiI	GTMKAC	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	1197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.