Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

18673579 .. 18676793

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGGGCCGAGTCAGGCATTTTCTACGGCGGAGAAACTCAGGAAAGCCGGCAACTCTTACTTCAAGAAAGGGCGCTTCAATGCCGCCATCGAGGCATATACTGAGGCGATAACTCTGTGCCCTGATATTCCTGTTTATTATACGAATCGCGCCCTTTGCCATCTGAAGCGTAATGATTGGACGAGAGTGGAAGAAGATTCTCGGAAAGCTATTCAGCTTGAACAAAACTCAGTTAAGGCTCATTATATGTTGGGGCTTGCATTACTACAGAAGCAAGAGTATGCTGATGGAGTTAAGGAATTGGAAAGGGCTTTGGATCTTGGGAGGGGTGCCAATCCGAAGGGTTATATGGTAGAGGAGATCTGGCAGGAGCTTGCAAAAGCAAAGTACATGGAGTGGGAGGATTTATCAAGCAAACGTTCATGGGAATTGCAAAACTTGAAAGAAGCTTGTGAGAATGCTCTCAAAGAGAAACATGACGCTTTTGAAATGGAAGGGTTTTTGGATGAAGCTGGTCCTACTCATATGAAACAGTTAGAGGCTTTAGGAAGAGCGTTTGAGAAAGCTGCAGAAGCTGACACACCAAGTGAGGTGCCGGATTACCTCTGTTGTAAAATCACTCTTGACATATTTCGTGATCCTGTGATTACTCCTAGTGGGGTTACATATGAGAGATCAGTGATCCTTAACCATCTTGAGAAGGTGGGTAACTTCGATCCAATCACGCGTGAGCCACTTGATCAATCACAGTTAATATCAAACTTAGCCATAAAAGAAGCAGTCGAAGCATATTTGCAACAACATGGTTGGGCTTACAGAACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

276

Amino Acids

31.39

Weight (kDa)

5.28

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	329, 592
AccII	CGCG	2 cut(s)	150, 727
AciI	CCGC	2 cut(s)	29, 84
AclI	AACGTT	1 cut(s)	418
AclWI	GGATC	4 cut(s)	324, 632, 676, 710
AcuI	CTGAAG	1 cut(s)	185
AdeI	CACNNNGTG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	64, 79, 221, 442, 488
AluBI	AGCT	7 cut(s)	209, 217, 373, 449, 512, 566, 575
AluI	AGCT	7 cut(s)	209, 217, 373, 449, 512, 566, 575
AlwI	GGATC	4 cut(s)	324, 632, 676, 710
AlwNI	CAGNNNCTG	1 cut(s)	575
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	566
AspLEI	GCGC	2 cut(s)	75, 152
AspS9I	GGNCC	2 cut(s)	5, 515
AvaII	GGWCC	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	2 cut(s)	329, 592
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	4 cut(s)	95, 168, 281, 699
BceAI	ACGGC	1 cut(s)	42
BclI	TGATCA	1 cut(s)	739
BfaI	CTAG	1 cut(s)	654
BfmI	CTRYAG	2 cut(s)	266, 567
BfoI	RGCGCY	1 cut(s)	76
BglI	GCCNNNNNGGC	1 cut(s)	92
BglII	AGATCT	1 cut(s)	360
BisI	GCNGC	2 cut(s)	84, 567
BlsI	GCNGC	2 cut(s)	85, 568
Bme18I	GGWCC	1 cut(s)	515
BmgT120I	GGNCC	2 cut(s)	5, 515
BmiI	GGNNCC	3 cut(s)	6, 331, 594
BpuEI	CTTGAG	1 cut(s)	716
Bse118I	RCCGGY	1 cut(s)	47
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	3 cut(s)	52, 93, 243
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	553
Bsh1236I	CGCG	2 cut(s)	150, 727
BshFI	GGCC	1 cut(s)	7
BshNI	GGYRCC	2 cut(s)	329, 592
BsiSI	CCGG	2 cut(s)	48, 596
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	7
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
BspACI	CCGC	2 cut(s)	29, 84
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	3 cut(s)	51, 94, 242
BspFNI	CGCG	2 cut(s)	150, 727
BspLI	GGNNCC	3 cut(s)	6, 331, 594
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	4 cut(s)	324, 632, 676, 710
BspQI	GCTCTTC	1 cut(s)	544
BspT107I	GGYRCC	2 cut(s)	329, 592
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssMI	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
Bst4CI	ACNGT	2 cut(s)	534, 750
Bst6I	CTCTTC	1 cut(s)	544
BstC8I	GCNNGC	3 cut(s)	49, 258, 375
BstDEI	CTNAG	4 cut(s)	38, 102, 229, 763
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	150, 727
BstH2I	RGCGCY	1 cut(s)	76
BstHHI	GCGC	2 cut(s)	75, 152
BstKTI	GATC	7 cut(s)	319, 363, 640, 677, 684, 718, 742
BstMBI	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 156, 572, 785
BstSFI	CTRYAG	2 cut(s)	266, 567
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	2 cut(s)	150, 727
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	2 cut(s)	316, 360
BstYI	RGATCY	2 cut(s)	316, 360
BsuRI	GGCC	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	511
BtsIMutI	CAGTG	1 cut(s)	684
Cac8I	GCNNGC	3 cut(s)	49, 258, 375
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	2 cut(s)	75, 152
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	2 cut(s)	5, 515
CseI	GACGC	1 cut(s)	488
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	4 cut(s)	391, 423, 476, 803
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	4 cut(s)	38, 102, 229, 763
DpnI	GATC	7 cut(s)	318, 362, 639, 676, 683, 717, 741
DpnII	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
DraIII	CACNNNGTG	1 cut(s)	587
Eam1104I	CTCTTC	1 cut(s)	544
EarI	CTCTTC	1 cut(s)	544
EciI	GGCGGA	1 cut(s)	44
Eco47I	GGWCC	1 cut(s)	515
Eco57I	CTGAAG	1 cut(s)	185
FaeI	CATG	4 cut(s)	394, 426, 479, 806
FatI	CATG	4 cut(s)	390, 422, 475, 802
FauNDI	CATATG	2 cut(s)	525, 667
FbaI	TGATCA	1 cut(s)	739
Fnu4HI	GCNGC	2 cut(s)	84, 567
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	2 cut(s)	84, 567
FspBI	CTAG	1 cut(s)	654
GlaI	GCGC	2 cut(s)	74, 151
GluI	GCNGC	2 cut(s)	84, 567
HaeII	RGCGCY	1 cut(s)	76
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	2 cut(s)	48, 596
HgaI	GACGC	1 cut(s)	488
HhaI	GCGC	2 cut(s)	75, 152
Hin1II	CATG	4 cut(s)	394, 426, 479, 806
Hin6I	GCGC	2 cut(s)	73, 150
HinP1I	GCGC	2 cut(s)	73, 150
HindIII	AAGCTT	1 cut(s)	447
HinfI	GANTC	3 cut(s)	10, 145, 197
HpaII	CCGG	2 cut(s)	48, 596
Hpy188I	TCNGA	3 cut(s)	165, 204, 339
Hpy188III	TCNNGA	5 cut(s)	40, 64, 623, 635, 695
HpyAV	CCTTC	3 cut(s)	334, 488, 694
HpyCH4III	ACNGT	2 cut(s)	534, 750
HpyCH4IV	ACGT	1 cut(s)	418
HpyCH4V	TGCA	5 cut(s)	260, 377, 433, 569, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 156, 572, 785
HpyF3I	CTNAG	4 cut(s)	38, 102, 229, 763
HpySE526I	ACGT	1 cut(s)	418
Hsp92II	CATG	4 cut(s)	394, 426, 479, 806
HspAI	GCGC	2 cut(s)	73, 150
KroI	GCCGGC	1 cut(s)	47
KroNI	GCCGGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	739
Kzo9I	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
LguI	GCTCTTC	1 cut(s)	544
LmnI	GCTCC	1 cut(s)	370
LpnPI	CCDG	9 cut(s)	25, 61, 135, 144, 349, 353, 498, 609, 654
Lsp1109I	GCAGC	1 cut(s)	553
MaeI	CTAG	1 cut(s)	654
MaeII	ACGT	1 cut(s)	418
MaeIII	GTNAC	2 cut(s)	661, 707
MalI	GATC	7 cut(s)	318, 362, 639, 676, 683, 717, 741
MboI	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
MboII	GAAGA	3 cut(s)	203, 206, 561
MflI	RGATCY	2 cut(s)	316, 360
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	2 cut(s)	299, 428
MluI	ACGCGT	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	8 cut(s)	85, 97, 318, 349, 394, 532, 583, 614
MroNI	GCCGGC	1 cut(s)	47
MseI	TTAA	4 cut(s)	234, 294, 687, 752
MspI	CCGG	2 cut(s)	48, 596
Mva1269I	GAATGC	1 cut(s)	463
MvnI	CGCG	2 cut(s)	150, 727
MwoI	GCNNNNNNNGC	4 cut(s)	92, 156, 572, 785
NaeI	GCCGGC	1 cut(s)	49
NdeI	CATATG	2 cut(s)	525, 667
NdeII	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
NgoMIV	GCCGGC	1 cut(s)	47
NlaIII	CATG	4 cut(s)	394, 426, 479, 806
NlaIV	GGNNCC	3 cut(s)	6, 331, 594
NmeAIII	GCCGAG	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	544
PctI	GAATGC	1 cut(s)	463
PdiI	GCCGGC	1 cut(s)	49
PfeI	GAWTC	2 cut(s)	145, 197
PkrI	GCNGC	2 cut(s)	85, 568
PleI	GAGTC	1 cut(s)	18
PpsI	GAGTC	1 cut(s)	18
Psp1406I	AACGTT	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	6, 331, 594
PspPI	GGNCC	2 cut(s)	5, 515
PstI	CTGCAG	1 cut(s)	571
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	2 cut(s)	316, 360
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SapI	GCTCTTC	1 cut(s)	544
SaqAI	TTAA	4 cut(s)	234, 294, 687, 752
SatI	GCNGC	2 cut(s)	84, 567
Sau3AI	GATC	7 cut(s)	316, 360, 637, 674, 681, 715, 739
Sau96I	GGNCC	2 cut(s)	5, 515
SchI	GAGTC	1 cut(s)	19
SduI	GDGCHC	1 cut(s)	122
SfcI	CTRYAG	2 cut(s)	266, 567
SinI	GGWCC	1 cut(s)	515
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
Sse9I	AATT	2 cut(s)	299, 428
SsiI	CCGC	2 cut(s)	29, 84
SspMI	CTAG	1 cut(s)	654
TaaI	ACNGT	2 cut(s)	534, 750
TaiI	ACGT	1 cut(s)	421
TaqI	TCGA	3 cut(s)	90, 714, 783
TasI	AATT	2 cut(s)	299, 428
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	145, 197
Tru1I	TTAA	4 cut(s)	234, 294, 687, 752
Tru9I	TTAA	4 cut(s)	234, 294, 687, 752
TscAI	CASTG	1 cut(s)	684
TseI	GCWGC	1 cut(s)	566
TspDTI	ATGAA	3 cut(s)	411, 522, 542
TspRI	CASTG	1 cut(s)	684
VpaK11BI	GGWCC	1 cut(s)	515
XspI	CTAG	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.