Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013247

Physical Location & Seq

Genomic Coordinates Forward (+)

15462109 .. 15466333

Gene Structure 4225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g18060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGTTGTTCCCGGGGCATTGTCTACGGCGGAGAAGCTCCGGAAAGACGGCAACTCCTACTTCAAGAAGGATCGTTTCGCGGCCGCCATCGATGCCTACACTGAGGCAATCACGCTGTGCCCTAATGTCCCTGTTTATCTCACGAATCGCGCTCTGTGTCATCTCAAGCGTAATGATTGGACCAGAGTGGAAGAAGATTCCAGAAAAGCTATTCAGCTAGACAGTAATTGCGTCAAGGCCCACTATATGCTGGGGCTTGCATTACTACAGAAGCAAGAGTATCCTGAAGGAGTTAAGGAATTGGAGAGGGCTTTGGATCTTGGGAGAGGTGCTGATCCTAAGGGTTATATGGTAGAGGAGATATGGCAGGAGCTTGCAAAGGCAAAATACATGGAGTGGGAAGAGGCATCGAGTAAACGTGCATGGGAATTGCAAAGCTTGAAAGAAGCTTGTGAAACTGCACTCAAAGAGAAACATGATGCTTTTCAGATGGAAGGGTTTCTGGATGAAGCTGGTACTACCCATATGAGACAGTTAGAGGCTTTAGATAGAGTGTTTGAGAAAGCTGCAGAAGCCGACACAGCAAGTGAGGTGCCAGATTATCTATGTTGTAAAATCACTCTTGATATATTTCGTGATCCTGTAATTACACCAAGTGGTGTCACATATGAGAGATCAGTGATCCTGAACCATCTTGAGAAGGTGGGTAATTTTGATCCTATCACTCGTGAGCCAGTCGATCCATCACAGCTAATACCAAATTTTGCCATAAAAGAAGCAGTGGAAGCGTATTTGAAAGAACATGGTTGGGCCTATAGAACGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009266 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051087 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

ANAPC3 TPR_1 TPR_11 TPR_2 TPR_8 U-box

Protein Analysis

276

Amino Acids

31.38

Weight (kDa)

5.19

Isoelectric Point (pI)

34.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_BSK1_C	PF25575	10 - 83	3.1e-06	Serine/threonine-protein kinase BSK1-like, TPR repeats
ANAPC3	PF12895	46 - 103	4.9e-06	Anaphase-promoting complex, cyclosome, subunit 3
U-box	PF04564	198 - 270	4.6e-28	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013247)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07370
fragaria_vesca	FvH4_2g18060 FvH4_2g18060
malus_domestica	MD05G1165100.v1.1 MD10G1154400.v1.1
prunus_persica	Prupe.8G193300_v2.0.a1
pyrus_communis	pycom05g15370 pycom10g13350
rosa_chinensis	RchiOBHm_Chr6g0283451
rosa_laevigata	RLG00000012825
rosa_multiflora	Rmu_sc0004959.1_g000017
rosa_roxburghii	Rroxscaffold_7G00185530
rosa_rugosa	Rorug06G0154300
rosa_samantha	Rh6AG266600 Rh6BG269100 Rh6CG269000 Rh6DG262400
rosa_wichuraiana	Rw6G023080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	592
AccI	GTMKAC	1 cut(s)	23
AccII	CGCG	2 cut(s)	80, 150
AccIII	TCCGGA	1 cut(s)	39
AciI	CCGC	3 cut(s)	29, 80, 84
AclWI	GGATC	7 cut(s)	78, 324, 329, 632, 676, 710, 734
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	760
AcuI	CTGAAG	1 cut(s)	306
AdeI	CACNNNGTG	2 cut(s)	117, 656
AfaI	GTAC	1 cut(s)	517
AgsI	TTSAA	3 cut(s)	64, 442, 796
AluBI	AGCT	9 cut(s)	37, 209, 217, 373, 438, 449, 512, 566, 751
AluI	AGCT	9 cut(s)	37, 209, 217, 373, 438, 449, 512, 566, 751
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	7 cut(s)	78, 324, 329, 632, 676, 710, 734
Ama87I	CYCGRG	1 cut(s)	11
Aor13HI	TCCGGA	1 cut(s)	39
AoxI	GGCC	3 cut(s)	81, 237, 810
ApeKI	GCWGC	1 cut(s)	566
ApoI	RAATTY	1 cut(s)	760
Asp700I	GAANNNNTTC	1 cut(s)	498
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	180, 238, 810
AsuC2I	CCSGG	2 cut(s)	12, 13
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	180
AxyI	CCTNAGG	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	122
BanI	GGYRCC	1 cut(s)	592
BauI	CACGAG	1 cut(s)	726
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	4 cut(s)	95, 484, 699, 751
BceAI	ACGGC	2 cut(s)	42, 64
BciVI	GTATCC	1 cut(s)	291
BcnI	CCSGG	2 cut(s)	12, 13
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	3 cut(s)	266, 567, 814
BfuI	GTATCC	1 cut(s)	291
BisI	GCNGC	3 cut(s)	81, 84, 567
BlsI	GCNGC	3 cut(s)	82, 85, 568
Bme1390I	CCNGG	2 cut(s)	12, 13
Bme18I	GGWCC	1 cut(s)	180
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	3 cut(s)	180, 238, 810
BmiI	GGNNCC	1 cut(s)	594
BmrFI	CCNGG	2 cut(s)	12, 13
BmsI	GCATC	3 cut(s)	82, 416, 469
BpuEI	CTTGAG	2 cut(s)	149, 716
BpuMI	CCSGG	2 cut(s)	12, 13
Bsa29I	ATCGAT	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	11, 12
BsaWI	WCCGGW	1 cut(s)	39
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bse1I	ACTGG	1 cut(s)	734
Bse21I	CCTNAGG	1 cut(s)	339
BseAI	TCCGGA	1 cut(s)	39
BseCI	ATCGAT	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	11, 12
BseGI	GGATG	1 cut(s)	511
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	734
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	122
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	1 cut(s)	553
BseYI	CCCAGC	1 cut(s)	250
BsgI	GTGCAG	1 cut(s)	444
Bsh1236I	CGCG	2 cut(s)	80, 150
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	83, 239, 812
BshNI	GGYRCC	1 cut(s)	592
BshVI	ATCGAT	1 cut(s)	90
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	12, 40
BslFI	GGGAC	1 cut(s)	113
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	3 cut(s)	83, 239, 812
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp13I	TCCGGA	1 cut(s)	39
Bsp143I	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
BspACI	CCGC	3 cut(s)	29, 80, 84
BspANI	GGCC	3 cut(s)	83, 239, 812
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	90
BspEI	TCCGGA	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	80, 150
BspLI	GGNNCC	1 cut(s)	594
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	7 cut(s)	78, 324, 329, 632, 676, 710, 734
BspT107I	GGYRCC	1 cut(s)	592
BsrI	ACTGG	1 cut(s)	734
BssECI	CCNNGG	2 cut(s)	11, 12
BssMI	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
BssSI	CACGAG	1 cut(s)	726
Bst2BI	CACGAG	1 cut(s)	726
Bst4CI	ACNGT	2 cut(s)	224, 534
Bst6I	CTCTTC	1 cut(s)	396
BstC8I	GCNNGC	2 cut(s)	258, 375
BstDEI	CTNAG	2 cut(s)	102, 339
BstF5I	GGATG	1 cut(s)	511
BstFNI	CGCG	2 cut(s)	80, 150
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	8 cut(s)	73, 319, 337, 640, 677, 684, 718, 742
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 572, 581, 785
BstSCI	CCNGG	2 cut(s)	10, 11
BstSFI	CTRYAG	3 cut(s)	266, 567, 814
BstSLI	GKGCMC	1 cut(s)	122
BstUI	CGCG	2 cut(s)	80, 150
BstV1I	GCAGC	1 cut(s)	553
BstX2I	RGATCY	1 cut(s)	316
BstYI	RGATCY	1 cut(s)	316
BstZI	CGGCCG	1 cut(s)	81
Bsu15I	ATCGAT	1 cut(s)	90
Bsu36I	CCTNAGG	1 cut(s)	339
BsuI	GTATCC	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	83, 239, 812
BsuTUI	ATCGAT	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	511
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	3 cut(s)	99, 684, 786
Cac8I	GCNNGC	2 cut(s)	258, 375
CciNI	GCGGCCGC	1 cut(s)	81
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	180, 238, 810
Cfr9I	CCCGGG	1 cut(s)	11
ClaI	ATCGAT	1 cut(s)	90
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	516
CviAII	CATG	4 cut(s)	391, 423, 476, 803
CviQI	GTAC	1 cut(s)	516
DdeI	CTNAG	2 cut(s)	102, 339
DpnI	GATC	8 cut(s)	72, 318, 336, 639, 676, 683, 717, 741
DpnII	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
DraIII	CACNNNGTG	2 cut(s)	117, 656
EaeI	YGGCCR	1 cut(s)	81
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
EciI	GGCGGA	1 cut(s)	44
EclXI	CGGCCG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	180
Eco52I	CGGCCG	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	306
Eco81I	CCTNAGG	1 cut(s)	339
Eco88I	CYCGRG	1 cut(s)	11
FaeI	CATG	4 cut(s)	394, 426, 479, 806
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	4 cut(s)	390, 422, 475, 802
FauNDI	CATATG	2 cut(s)	525, 667
FblI	GTMKAC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	81, 84, 567
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	81, 84, 567
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	3 cut(s)	81, 84, 567
GsaI	CCCAGC	1 cut(s)	254
HaeIII	GGCC	3 cut(s)	83, 239, 812
HapII	CCGG	2 cut(s)	12, 40
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	394, 426, 479, 806
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HindIII	AAGCTT	2 cut(s)	436, 447
HinfI	GANTC	2 cut(s)	145, 197
HpaII	CCGG	2 cut(s)	12, 40
Hpy166II	GTNNAC	2 cut(s)	24, 416
Hpy188I	TCNGA	1 cut(s)	489
Hpy8I	GTNNAC	2 cut(s)	24, 416
HpyAV	CCTTC	4 cut(s)	61, 281, 488, 694
HpyCH4III	ACNGT	2 cut(s)	224, 534
HpyCH4IV	ACGT	2 cut(s)	418, 821
HpyCH4V	TGCA	6 cut(s)	260, 377, 422, 433, 461, 569
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 572, 581, 785
HpyF3I	CTNAG	2 cut(s)	102, 339
HpySE526I	ACGT	2 cut(s)	418, 821
Hsp92II	CATG	4 cut(s)	394, 426, 479, 806
HspAI	GCGC	1 cut(s)	150
Kpn2I	TCCGGA	1 cut(s)	39
Kzo9I	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
LmnI	GCTCC	2 cut(s)	42, 370
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	3 cut(s)	82, 416, 469
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	2 cut(s)	418, 821
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	8 cut(s)	72, 318, 336, 639, 676, 683, 717, 741
MboI	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
MboII	GAAGA	3 cut(s)	203, 206, 413
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	6 cut(s)	226, 299, 428, 645, 709, 760
MnlI	CCTC	7 cut(s)	97, 300, 320, 349, 397, 532, 583
MroI	TCCGGA	1 cut(s)	39
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	294
MspI	CCGG	2 cut(s)	12, 40
MspR9I	CCNGG	2 cut(s)	12, 13
MvnI	CGCG	2 cut(s)	80, 150
MwoI	GCNNNNNNNGC	4 cut(s)	92, 572, 581, 785
NciI	CCSGG	2 cut(s)	12, 13
NdeI	CATATG	2 cut(s)	525, 667
NdeII	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
NlaIII	CATG	4 cut(s)	394, 426, 479, 806
NlaIV	GGNNCC	1 cut(s)	594
NmuCI	GTSAC	1 cut(s)	661
NotI	GCGGCCGC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	145, 197
PkrI	GCNGC	3 cut(s)	82, 85, 568
PspFI	CCCAGC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	594
PspPI	GGNCC	3 cut(s)	180, 238, 810
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	1 cut(s)	517
RsaNI	GTAC	1 cut(s)	516
SaqAI	TTAA	1 cut(s)	294
SatI	GCNGC	3 cut(s)	81, 84, 567
Sau3AI	GATC	8 cut(s)	70, 316, 334, 637, 674, 681, 715, 739
Sau96I	GGNCC	3 cut(s)	180, 238, 810
ScrFI	CCNGG	2 cut(s)	12, 13
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	3 cut(s)	82, 416, 469
SfcI	CTRYAG	3 cut(s)	266, 567, 814
SinI	GGWCC	1 cut(s)	180
SmaI	CCCGGG	1 cut(s)	13
SmlI	CTYRAG	2 cut(s)	164, 695
SmoI	CTYRAG	2 cut(s)	164, 695
Sse9I	AATT	6 cut(s)	226, 299, 428, 645, 709, 760
SsiI	CCGC	3 cut(s)	29, 80, 84
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	10, 11
TaaI	ACNGT	2 cut(s)	224, 534
TaiI	ACGT	2 cut(s)	421, 824
TaqI	TCGA	3 cut(s)	90, 410, 738
TasI	AATT	6 cut(s)	226, 299, 428, 645, 709, 760
TauI	GCSGC	2 cut(s)	83, 86
TfiI	GAWTC	2 cut(s)	145, 197
Tru1I	TTAA	1 cut(s)	294
Tru9I	TTAA	1 cut(s)	294
TscAI	CASTG	3 cut(s)	106, 684, 786
TseFI	GTSAC	1 cut(s)	661
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	661
TspDTI	ATGAA	1 cut(s)	522
TspMI	CCCGGG	1 cut(s)	11
TspRI	CASTG	3 cut(s)	106, 684, 786
VpaK11BI	GGWCC	1 cut(s)	180
XapI	RAATTY	1 cut(s)	760
XmaI	CCCGGG	1 cut(s)	11
XmiI	GTMKAC	1 cut(s)	23
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.