Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006566

Physical Location & Seq

Genomic Coordinates Forward (+)

2381188 .. 2383369

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G07440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGAACTTTGTCGTCAGACGGGTAGGCTCCATTTTGCCGTCGATACGTCACGGCGGCGTTTCCCAGATTCGACTCGCGAGAACAGAGGCAGGTCAGCCGAGACGGCGAAACAAGTTGCCTTCTCTTCCGCTAAAGAAGAAGGAAGAGAAATCCGAGTGGTGGATAGTAGACGGAGAGATGCACGAGATCGGTGATCACGTCCCTCCTCGTGAGCGTTTCACAATCCCCAGGGACAACATTCCGAACAAACGCCGTAAGCAGCTCCGTGACCAGTTCATGCGCCGCACTCGCCTCGTCCTTAAAGAATCGGAACATGAGCCATGGTGCAAAAAGTATATGGAACTATATAACGAGCTTAGAGAAAACTGGGAGAGGCTTTATTGGGATGAAGGGTATTCAAAGAAACTCGCAAGTGATCATGCAAATTATGAATCCGCTGAAGAAGACGATGAAGATTTTAATCCATACAGGAACAGGCGGTCTTTCAGCGATCAAACAAAGGAGCAAGGGTTTAATAGAACTACACAAGGTGATAATTGGGAGAAAGTCAGTCAAATCAGGGATAAGTTTGAGTATGATAGAGAAAGGAGGATGAGAGATAAAGCCTTTGCACCAATGAATGCAGCACCAGAATCTCAAGAATCTAGGGACTTGAATTGGAATGCACAAAGACGGCCATTTGATCCTGATAGATTCGCAAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

28.54

Weight (kDa)

9.35

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07440 AT3G07440 AT5G48530
fragaria_vesca	FvH4_2g17870
malus_domestica	MD10G1152600.v1.1
prunus_persica	Prupe.8G191100_v2.0.a1 Prupe.8G191100_v2.0.a1 Prupe.8G191300_v2.0.a1
pyrus_communis	pycom10g13160
rosa_chinensis	RchiOBHm_Chr6g0282891
rosa_laevigata	RLG00000012847 RLG00000012858
rosa_multiflora	Rmu_sc0000159.1_g000054
rosa_roxburghii	Rroxscaffold_7G00185870
rosa_rugosa	Rorug06G0150500 Rorug06G0150500 Rorug06G0150800 Rorug06G0150900
rosa_samantha	Rh6AG263800 Rh6AG264300 Rh6BG266700 Rh6BG267000 Rh6CG265900 Rh6DG258500
rosa_wichuraiana	Rw6G022780 Rw6G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	168
AccII	CGCG	1 cut(s)	77
AciI	CCGC	5 cut(s)	54, 128, 283, 435, 478
AclWI	GGATC	1 cut(s)	677
AcoI	YGGCCR	1 cut(s)	674
AcuI	CTGAAG	1 cut(s)	459
AdeI	CACNNNGTG	1 cut(s)	530
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	399, 655
AjiI	CACGTC	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	2 cut(s)	262, 355
AluI	AGCT	2 cut(s)	262, 355
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	677
AoxI	GGCC	1 cut(s)	674
ApeKI	GCWGC	2 cut(s)	259, 623
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	203, 542
BauI	CACGAG	2 cut(s)	182, 207
BbsI	GAAGAC	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	271, 635
BceAI	ACGGC	5 cut(s)	22, 67, 119, 237, 689
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	229
BclI	TGATCA	2 cut(s)	193, 415
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	1 cut(s)	645
BfuAI	ACCTGC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	55, 260, 283, 624
BlsI	GCNGC	4 cut(s)	56, 261, 284, 625
Bme1390I	CCNGG	1 cut(s)	229
BmgBI	CACGTC	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	450
BpuEI	CTTGAG	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	3 cut(s)	227, 228, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	494, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
Bse1I	ACTGG	2 cut(s)	271, 371
Bse8I	GATNNNNATC	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	3 cut(s)	227, 228, 320
BseGI	GGATG	2 cut(s)	391, 597
BseJI	GATNNNNATC	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	271, 371
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	271, 635
Bsh1236I	CGCG	1 cut(s)	77
BshFI	GGCC	1 cut(s)	676
BslFI	GGGAC	3 cut(s)	185, 245, 662
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	94
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	3 cut(s)	185, 245, 662
BsmI	GAATGC	2 cut(s)	625, 667
BsnI	GGCC	1 cut(s)	676
Bsp143I	GATC	5 cut(s)	186, 193, 415, 490, 682
Bsp19I	CCATGG	1 cut(s)	320
Bsp68I	TCGCGA	1 cut(s)	77
BspACI	CCGC	5 cut(s)	54, 128, 283, 435, 478
BspANI	GGCC	1 cut(s)	676
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	1 cut(s)	28
BspMI	ACCTGC	1 cut(s)	80
BspPI	GGATC	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	271, 371
BssECI	CCNNGG	3 cut(s)	227, 228, 320
BssMI	GATC	5 cut(s)	186, 193, 415, 490, 682
BssSI	CACGAG	2 cut(s)	182, 207
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	2 cut(s)	182, 207
Bst2UI	CCWGG	1 cut(s)	229
Bst6I	CTCTTC	2 cut(s)	129, 138
BstDEI	CTNAG	1 cut(s)	356
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	391, 597
BstFNI	CGCG	1 cut(s)	77
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	5 cut(s)	189, 196, 418, 493, 685
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	5 cut(s)	186, 193, 415, 490, 682
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 288
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	2 cut(s)	271, 635
BstV2I	GAAGAC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	676
BtgI	CCRYGG	1 cut(s)	320
BtrI	CACGTC	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	391, 597
BtuMI	TCGCGA	1 cut(s)	77
BveI	ACCTGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	282
CviAII	CATG	4 cut(s)	277, 314, 321, 419
CviJI	RGCY	8 cut(s)	27, 97, 262, 319, 355, 376, 605, 676
CviKI_1	RGCY	8 cut(s)	27, 97, 262, 319, 355, 376, 605, 676
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	5 cut(s)	188, 195, 417, 492, 684
DpnII	GATC	5 cut(s)	186, 193, 415, 490, 682
DraIII	CACNNNGTG	1 cut(s)	530
EaeI	YGGCCR	1 cut(s)	674
Eam1104I	CTCTTC	2 cut(s)	129, 138
EarI	CTCTTC	2 cut(s)	129, 138
Eco130I	CCWWGG	1 cut(s)	320
Eco57I	CTGAAG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	94
FaeI	CATG	4 cut(s)	280, 317, 324, 422
FaqI	GGGAC	3 cut(s)	185, 245, 662
FatI	CATG	4 cut(s)	276, 313, 320, 418
FbaI	TGATCA	2 cut(s)	193, 415
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	4 cut(s)	55, 260, 283, 624
FokI	GGATG	2 cut(s)	398, 604
Fsp4HI	GCNGC	4 cut(s)	55, 260, 283, 624
FspBI	CTAG	1 cut(s)	645
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	4 cut(s)	55, 260, 283, 624
HaeIII	GGCC	1 cut(s)	676
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	280, 317, 324, 422
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HinfI	GANTC	7 cut(s)	67, 72, 305, 431, 632, 641, 693
HphI	GGTGA	2 cut(s)	203, 542
Hpy166II	GTNNAC	1 cut(s)	169
Hpy188I	TCNGA	4 cut(s)	17, 154, 243, 310
Hpy188III	TCNNGA	4 cut(s)	76, 209, 638, 686
Hpy8I	GTNNAC	1 cut(s)	169
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	3 cut(s)	129, 133, 383
HpyCH4IV	ACGT	2 cut(s)	46, 198
HpyCH4V	TGCA	6 cut(s)	181, 327, 422, 611, 623, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 288
HpyF3I	CTNAG	1 cut(s)	356
HpySE526I	ACGT	2 cut(s)	46, 198
Hsp92II	CATG	4 cut(s)	280, 317, 324, 422
HspAI	GCGC	1 cut(s)	280
Ksp22I	TGATCA	2 cut(s)	193, 415
Kzo9I	GATC	5 cut(s)	186, 193, 415, 490, 682
LmnI	GCTCC	3 cut(s)	32, 267, 502
Lsp1109I	GCAGC	2 cut(s)	271, 635
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	645
MaeII	ACGT	2 cut(s)	46, 198
MaeIII	GTNAC	2 cut(s)	47, 266
MalI	GATC	5 cut(s)	188, 195, 417, 492, 684
MboI	GATC	5 cut(s)	186, 193, 415, 490, 682
MboII	GAAGA	6 cut(s)	116, 148, 155, 452, 455, 464
MluCI	AATT	3 cut(s)	424, 535, 655
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	6 cut(s)	79, 213, 216, 302, 366, 582
MseI	TTAA	3 cut(s)	300, 459, 513
MspA1I	CMGCKG	1 cut(s)	437
MspR9I	CCNGG	1 cut(s)	229
Mva1269I	GAATGC	2 cut(s)	625, 667
MvaI	CCWGG	1 cut(s)	229
MvnI	CGCG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	103, 288
NcoI	CCATGG	1 cut(s)	320
NdeII	GATC	5 cut(s)	186, 193, 415, 490, 682
NlaIII	CATG	4 cut(s)	280, 317, 324, 422
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	2 cut(s)	47, 266
NruI	TCGCGA	1 cut(s)	77
PasI	CCCWGGG	1 cut(s)	228
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PctI	GAATGC	2 cut(s)	625, 667
PfeI	GAWTC	6 cut(s)	67, 305, 431, 632, 641, 693
PkrI	GCNGC	4 cut(s)	56, 261, 284, 625
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	28
RruI	TCGCGA	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	300, 459, 513
SatI	GCNGC	4 cut(s)	55, 260, 283, 624
Sau3AI	GATC	5 cut(s)	186, 193, 415, 490, 682
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	6 cut(s)	49, 94, 201, 264, 357, 532
SfaNI	GCATC	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	636
SmoI	CTYRAG	1 cut(s)	636
Sse9I	AATT	3 cut(s)	424, 535, 655
SsiI	CCGC	5 cut(s)	54, 128, 283, 435, 478
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	320
TaiI	ACGT	2 cut(s)	49, 201
TaqI	TCGA	2 cut(s)	41, 70
TasI	AATT	3 cut(s)	424, 535, 655
TauI	GCSGC	2 cut(s)	57, 285
TfiI	GAWTC	6 cut(s)	67, 305, 431, 632, 641, 693
Tru1I	TTAA	3 cut(s)	300, 459, 513
Tru9I	TTAA	3 cut(s)	300, 459, 513
TseFI	GTSAC	2 cut(s)	47, 266
TseI	GCWGC	2 cut(s)	259, 623
Tsp45I	GTSAC	2 cut(s)	47, 266
TspDTI	ATGAA	6 cut(s)	17, 265, 402, 444, 465, 632
TspGWI	ACGGA	2 cut(s)	186, 254
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.