Prupe.8G191300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0006566
Physical Location & Seq
Reverse (-)
18580242 .. 18580897
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G191300.1

Sequence Viewer

Length: 276 bp
ATGCTCACCCTCGCAAAACGACTCAAGAACTCACCTTCATGCTTCCAATCCGCCGTCAACCAAATATGGTGGGTTCGGACTGAGTCCGGCCCCTCCCGGCGTCGGCGAAGGCACAAGTCTCTTGCCCTGGCTATGAGGAAGTCGGAGGAGAAGTCCGAGTGGTGGATAGTCGACGGAGAAATCCACGAGATCGGTGATCACGTGCCTCCACATGAGCGATTCATCATTCCCAGAGATAACATCCCCAACAAGCGTCGAAAGCAGCTCAGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.92

Weight (kDa)

10.86

Isoelectric Point (pI)

96.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AciI CCGC 1 cut(s) 51
AcvI CACGTG 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 100
AfiI CCNNNNNNNGG 2 cut(s) 102, 162
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 123
AoxI GGCC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 2 cut(s) 24, 206
BauI CACGAG 1 cut(s) 185
BbrPI CACGTG 1 cut(s) 202
BceAI ACGGC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 196
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 2 cut(s) 97, 128
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 2 cut(s) 97, 128
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 162
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 102, 162
BseMII CTCAG 1 cut(s) 72
BseRI GAGGAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 90
BsiSI CCGG 2 cut(s) 87, 97
BslI CCNNNNNNNGG 2 cut(s) 102, 162
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 189, 196
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 73
BspLI GGNNCC 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 2 cut(s) 189, 196
BssNI GRCGYC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 185
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 2 cut(s) 81, 266
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 2 cut(s) 192, 199
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 189, 196
BstMWI GCNNNNNNNGC 1 cut(s) 259
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 2 cut(s) 95, 126
BsuRI GGCC 1 cut(s) 90
BtsCI GGATG 1 cut(s) 240
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 2 cut(s) 89, 242
CspCI CAANNNNNGTGG 2 cut(s) 50, 85
CviAII CATG 2 cut(s) 39, 212
CviJI RGCY 3 cut(s) 90, 131, 265
CviKI_1 RGCY 3 cut(s) 90, 131, 265
DdeI CTNAG 2 cut(s) 81, 266
DpnI GATC 2 cut(s) 191, 198
DpnII GATC 2 cut(s) 189, 196
EciI GGCGGA 1 cut(s) 40
Eco72I CACGTG 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 42, 215
FaiI YATR 4 cut(s) 40, 67, 134, 213
FatI CATG 2 cut(s) 38, 211
FbaI TGATCA 1 cut(s) 196
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
HaeIII GGCC 1 cut(s) 90
HapII CCGG 2 cut(s) 87, 97
HgaI GACGC 2 cut(s) 89, 242
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 42, 215
HincII GTYRAC 2 cut(s) 58, 172
HindII GTYRAC 2 cut(s) 58, 172
HinfI GANTC 3 cut(s) 21, 83, 219
HpaII CCGG 2 cut(s) 87, 97
HphI GGTGA 2 cut(s) 24, 206
Hpy166II GTNNAC 2 cut(s) 58, 172
Hpy188I TCNGA 4 cut(s) 78, 145, 157, 269
Hpy188III TCNNGA 1 cut(s) 25
Hpy8I GTNNAC 2 cut(s) 58, 172
Hpy99I CGWCG 3 cut(s) 105, 176, 258
HpyAV CCTTC 2 cut(s) 45, 102
HpyCH4IV ACGT 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 259
HpyF3I CTNAG 2 cut(s) 81, 266
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 42, 215
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 189, 196
LpnPI CCDG 5 cut(s) 100, 110, 113, 140, 244
MaeII ACGT 1 cut(s) 201
MalI GATC 2 cut(s) 191, 198
MboI GATC 2 cut(s) 189, 196
MlyI GAGTC 2 cut(s) 15, 92
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 20, 103, 129, 139, 216
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 2 cut(s) 87, 97
MspR9I CCNGG 2 cut(s) 97, 128
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 259
NciI CCSGG 1 cut(s) 97
NdeII GATC 2 cut(s) 189, 196
NlaIII CATG 2 cut(s) 42, 215
NlaIV GGNNCC 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 1 cut(s) 219
PflFI GACNNNGTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 264
PleI GAGTC 2 cut(s) 15, 91
PmaCI CACGTG 1 cut(s) 202
PmlI CACGTG 1 cut(s) 202
PpsI GAGTC 2 cut(s) 15, 91
Ppu21I YACGTR 1 cut(s) 202
Psp6I CCWGG 1 cut(s) 126
PspCI CACGTG 1 cut(s) 202
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 1 cut(s) 91
PspPI GGNCC 1 cut(s) 89
PsyI GACNNNGTC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 37
SalI GTCGAC 1 cut(s) 170
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 2 cut(s) 189, 196
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 15, 92
ScrFI CCNGG 2 cut(s) 97, 128
SetI ASST 3 cut(s) 37, 204, 267
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SsiI CCGC 1 cut(s) 51
StyD4I CCNGG 2 cut(s) 95, 126
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 171, 256
TfiI GAWTC 1 cut(s) 219
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 2 cut(s) 27, 211
TspGWI ACGGA 1 cut(s) 189
Tth111I GACNNNGTC 1 cut(s) 82
XmiI GTMKAC 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.