Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000159.1

Orthogroup ID

OG0006566

Physical Location & Seq

Genomic Coordinates Forward (+)

263975 .. 267900

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000159.1_g000054.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggccagctatccagtcacagagtcacactcgggctgtgtttccgaaatgctctccctggcgaaaagactgaagacgttgccttggtgcgtggaggccgccgggaaccagctccggcgagtgagaacggaggcacggtcgccgaggcgtcggtcgaggtctccggcgctggcgatgaggaaggcggaggagaagtcggagtggtggatagtcgacggcgaaatgcacgaaatcggggaccacgtgccgccgcgtgagcggttcgtgattccgagagataacatccccaacaagcgtcggaagcagctcagggaacagttcatgcgccgcactcgcctcgttctcaaagaaacggagcatgagccttggtgcaaaaagtatatggagctgtaccaggagcttagagagaattgggaaaggctgtactgggacgaaggttactccaaaaagcttgcccaggatcatgcgaattacgagtcagctgaagatgatgatcaggatttcaatccgtaccggagcaggcaatcccattccgagcaatttaaggaccatggatttgggagtaggcaaggtgatacatgggaaaaggttaaccaaattagggataaatttgagtatgacagagaaaggaggatgaaagaaaaagcatttgcacctatgcgtggagaagtttcttctaacgtccatgatacgaactccagaagacagccatttgacagccagagatacttttctgacagtgaaagagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

30.19

Weight (kDa)

8.87

Isoelectric Point (pI)

66.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07440 AT3G07440 AT5G48530
fragaria_vesca	FvH4_2g17870
malus_domestica	MD10G1152600.v1.1
prunus_persica	Prupe.8G191100_v2.0.a1 Prupe.8G191100_v2.0.a1 Prupe.8G191300_v2.0.a1
pyrus_communis	pycom10g13160
rosa_chinensis	RchiOBHm_Chr6g0282891
rosa_laevigata	RLG00000012847 RLG00000012858
rosa_multiflora	Rmu_sc0000159.1_g000054
rosa_roxburghii	Rroxscaffold_7G00185870
rosa_rugosa	Rorug06G0150500 Rorug06G0150500 Rorug06G0150800 Rorug06G0150900
rosa_samantha	Rh6AG263800 Rh6AG264300 Rh6BG266700 Rh6BG267000 Rh6CG265900 Rh6DG258500
rosa_wichuraiana	Rw6G022780 Rw6G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	259
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	1 cut(s)	253
AciI	CCGC	6 cut(s)	99, 185, 248, 251, 259, 328
AclWI	GGATC	1 cut(s)	468
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	608
AcuI	CTGAAG	2 cut(s)	92, 504
AcvI	CACGTG	1 cut(s)	244
AcyI	GRCGYC	1 cut(s)	148
AfaI	GTAC	3 cut(s)	392, 425, 512
AfiI	CCNNNNNNNGG	2 cut(s)	601, 662
AgsI	TTSAA	1 cut(s)	505
AjnI	CCWGG	3 cut(s)	57, 393, 456
AluBI	AGCT	7 cut(s)	9, 112, 307, 388, 400, 451, 482
AluI	AGCT	7 cut(s)	9, 112, 307, 388, 400, 451, 482
Alw26I	GTCTC	1 cut(s)	165
AlwI	GGATC	1 cut(s)	468
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	2 cut(s)	3, 96
ApeKI	GCWGC	1 cut(s)	304
ApoI	RAATTY	1 cut(s)	608
ArsI	GACNNNNNNTTYG	4 cut(s)	461, 493, 539, 571
AspLEI	GCGC	2 cut(s)	169, 327
AspS9I	GGNCC	2 cut(s)	238, 547
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	584
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	238, 547
BalI	TGGCCA	1 cut(s)	5
BbrPI	CACGTG	1 cut(s)	244
BbsI	GAAGAC	2 cut(s)	80, 709
BbvI	GCAGC	1 cut(s)	316
BceAI	ACGGC	1 cut(s)	232
BcgI	CGANNNNNNTGC	2 cut(s)	319, 353
BciT130I	CCWGG	3 cut(s)	59, 395, 458
BclI	TGATCA	1 cut(s)	493
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	170
BisI	GCNGC	5 cut(s)	99, 248, 251, 305, 328
BlsI	GCNGC	5 cut(s)	100, 249, 252, 306, 329
Bme1390I	CCNGG	4 cut(s)	59, 103, 395, 458
Bme18I	GGWCC	2 cut(s)	238, 547
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	238, 547
BmiI	GGNNCC	2 cut(s)	107, 239
BmrFI	CCNGG	4 cut(s)	59, 103, 395, 458
BmrI	ACTGGG	1 cut(s)	436
BmuI	ACTGGG	1 cut(s)	436
BpiI	GAAGAC	2 cut(s)	80, 709
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
BpmI	CTGGAG	1 cut(s)	682
Bpu10I	CCTNAGC	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	103
BsaAI	YACGTR	1 cut(s)	244
BsaBI	GATNNNNATC	2 cut(s)	492, 504
BsaHI	GRCGYC	1 cut(s)	148
BsaI	GGTCTC	1 cut(s)	165
BsaJI	CCNNGG	6 cut(s)	57, 83, 143, 365, 456, 550
BsaWI	WCCGGW	1 cut(s)	513
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 179, 209
Bsc4I	CCNNNNNNNGG	2 cut(s)	601, 662
Bse1I	ACTGG	2 cut(s)	14, 431
Bse8I	GATNNNNATC	2 cut(s)	492, 504
BseBI	CCWGG	3 cut(s)	59, 395, 458
BseDI	CCNNGG	6 cut(s)	57, 83, 143, 365, 456, 550
BseGI	GGATG	2 cut(s)	282, 639
BseJI	GATNNNNATC	2 cut(s)	492, 504
BseLI	CCNNNNNNNGG	2 cut(s)	601, 662
BseMII	CTCAG	1 cut(s)	322
BseNI	ACTGG	2 cut(s)	14, 431
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	316
Bsh1236I	CGCG	1 cut(s)	253
Bsh1285I	CGRYCG	2 cut(s)	140, 155
BshFI	GGCC	2 cut(s)	5, 98
BsiEI	CGRYCG	2 cut(s)	140, 155
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	4 cut(s)	102, 115, 164, 514
BslFI	GGGAC	2 cut(s)	251, 443
BslI	CCNNNNNNNGG	2 cut(s)	601, 662
BsmAI	GTCTC	1 cut(s)	165
BsmFI	GGGAC	2 cut(s)	251, 443
BsnI	GGCC	2 cut(s)	5, 98
Bso31I	GGTCTC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	31
Bsp143I	GATC	2 cut(s)	460, 493
Bsp19I	CCATGG	1 cut(s)	550
BspACI	CCGC	6 cut(s)	99, 185, 248, 251, 259, 328
BspANI	GGCC	2 cut(s)	5, 98
BspCNI	CTCAG	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	2 cut(s)	107, 239
BspPI	GGATC	1 cut(s)	468
BspTNI	GGTCTC	1 cut(s)	165
BsrBI	CCGCTC	1 cut(s)	259
BsrI	ACTGG	2 cut(s)	14, 431
BssECI	CCNNGG	6 cut(s)	57, 83, 143, 365, 456, 550
BssMI	GATC	2 cut(s)	460, 493
BssNI	GRCGYC	1 cut(s)	148
BssT1I	CCWWGG	3 cut(s)	83, 365, 550
Bst2UI	CCWGG	3 cut(s)	59, 395, 458
Bst4CI	ACNGT	3 cut(s)	138, 318, 740
BstACI	GRCGYC	1 cut(s)	148
BstBAI	YACGTR	1 cut(s)	244
BstC8I	GCNNGC	4 cut(s)	7, 171, 453, 521
BstDEI	CTNAG	2 cut(s)	308, 401
BstDSI	CCRYGG	1 cut(s)	550
BstF5I	GGATG	2 cut(s)	282, 639
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 327
BstKTI	GATC	2 cut(s)	463, 496
BstMAI	GTCTC	1 cut(s)	165
BstMBI	GATC	2 cut(s)	460, 493
BstMCI	CGRYCG	2 cut(s)	140, 155
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 301, 333
BstNI	CCWGG	3 cut(s)	59, 395, 458
BstSCI	CCNGG	4 cut(s)	57, 101, 393, 456
BstUI	CGCG	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	2 cut(s)	80, 709
BstXI	CCANNNNNNTGG	1 cut(s)	557
BsuRI	GGCC	2 cut(s)	5, 98
BtgI	CCRYGG	1 cut(s)	550
BtgZI	GCGATG	1 cut(s)	188
BtsCI	GGATG	2 cut(s)	282, 639
BtsIMutI	CAGTG	1 cut(s)	745
Cac8I	GCNNGC	4 cut(s)	7, 171, 453, 521
CfoI	GCGC	2 cut(s)	169, 327
Cfr13I	GGNCC	2 cut(s)	238, 547
CseI	GACGC	2 cut(s)	137, 284
Csp6I	GTAC	3 cut(s)	391, 424, 511
CviAII	CATG	6 cut(s)	322, 359, 464, 551, 579, 686
CviQI	GTAC	3 cut(s)	391, 424, 511
DdeI	CTNAG	2 cut(s)	308, 401
DpnI	GATC	2 cut(s)	462, 495
DpnII	GATC	2 cut(s)	460, 493
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	3 cut(s)	83, 365, 550
Eco31I	GGTCTC	1 cut(s)	165
Eco47I	GGWCC	2 cut(s)	238, 547
Eco57I	CTGAAG	2 cut(s)	92, 504
Eco72I	CACGTG	1 cut(s)	244
Eco88I	CYCGRG	1 cut(s)	31
EcoRII	CCWGG	3 cut(s)	57, 393, 456
EcoT14I	CCWWGG	3 cut(s)	83, 365, 550
ErhI	CCWWGG	3 cut(s)	83, 365, 550
FaeI	CATG	6 cut(s)	325, 362, 467, 554, 582, 689
FaqI	GGGAC	2 cut(s)	251, 443
FatI	CATG	6 cut(s)	321, 358, 463, 550, 578, 685
FbaI	TGATCA	1 cut(s)	493
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	5 cut(s)	99, 248, 251, 305, 328
FokI	GGATG	2 cut(s)	269, 646
Fsp4HI	GCNGC	5 cut(s)	99, 248, 251, 305, 328
GlaI	GCGC	2 cut(s)	168, 326
GluI	GCNGC	5 cut(s)	99, 248, 251, 305, 328
GsuI	CTGGAG	1 cut(s)	682
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	5, 98
HapII	CCGG	4 cut(s)	102, 115, 164, 514
HgaI	GACGC	2 cut(s)	137, 284
HhaI	GCGC	2 cut(s)	169, 327
Hin1I	GRCGYC	1 cut(s)	148
Hin1II	CATG	6 cut(s)	325, 362, 467, 554, 582, 689
Hin6I	GCGC	2 cut(s)	167, 325
HinP1I	GCGC	2 cut(s)	167, 325
HincII	GTYRAC	2 cut(s)	214, 592
HindII	GTYRAC	2 cut(s)	214, 592
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	23, 268, 476
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	4 cut(s)	102, 115, 164, 514
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	214, 592
Hpy188I	TCNGA	6 cut(s)	46, 199, 273, 300, 535, 736
Hpy188III	TCNNGA	3 cut(s)	265, 497, 699
Hpy8I	GTNNAC	2 cut(s)	214, 592
Hpy99I	CGWCG	3 cut(s)	153, 218, 300
HpyAV	CCTTC	2 cut(s)	175, 428
HpyCH4III	ACNGT	3 cut(s)	138, 318, 740
HpyCH4IV	ACGT	3 cut(s)	77, 243, 681
HpyCH4V	TGCA	3 cut(s)	226, 372, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 301, 333
HpyF3I	CTNAG	2 cut(s)	308, 401
HpySE526I	ACGT	3 cut(s)	77, 243, 681
Hsp92I	GRCGYC	1 cut(s)	148
Hsp92II	CATG	6 cut(s)	325, 362, 467, 554, 582, 689
HspAI	GCGC	2 cut(s)	167, 325
Ksp22I	TGATCA	1 cut(s)	493
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	460, 493
LmnI	GCTCC	5 cut(s)	117, 355, 385, 397, 516
Lsp1109I	GCAGC	1 cut(s)	316
MaeII	ACGT	3 cut(s)	77, 243, 681
MaeIII	GTNAC	3 cut(s)	16, 24, 437
MalI	GATC	2 cut(s)	462, 495
MbiI	CCGCTC	1 cut(s)	259
MboI	GATC	2 cut(s)	460, 493
MboII	GAAGA	4 cut(s)	85, 497, 666, 714
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	409, 469, 539, 597, 608
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	32, 485
MmeI	TCCRAC	2 cut(s)	177, 278
MnlI	CCTC	8 cut(s)	88, 124, 138, 150, 171, 181, 347, 624
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	543, 591
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	482
MspI	CCGG	4 cut(s)	102, 115, 164, 514
MspR9I	CCNGG	4 cut(s)	59, 103, 395, 458
MvaI	CCWGG	3 cut(s)	59, 395, 458
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	3 cut(s)	256, 301, 333
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	550
NdeII	GATC	2 cut(s)	460, 493
NlaIII	CATG	6 cut(s)	325, 362, 467, 554, 582, 689
NlaIV	GGNNCC	2 cut(s)	107, 239
NmeAIII	GCCGAG	1 cut(s)	168
NmuCI	GTSAC	2 cut(s)	16, 24
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	5 cut(s)	100, 249, 252, 306, 329
PleI	GAGTC	2 cut(s)	31, 484
PmaCI	CACGTG	1 cut(s)	244
PmlI	CACGTG	1 cut(s)	244
PpsI	GAGTC	2 cut(s)	31, 484
Ppu21I	YACGTR	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	57, 393, 456
PspCI	CACGTG	1 cut(s)	244
PspGI	CCWGG	3 cut(s)	57, 393, 456
PspN4I	GGNNCC	2 cut(s)	107, 239
PspPI	GGNCC	2 cut(s)	238, 547
PvuII	CAGCTG	1 cut(s)	482
RsaI	GTAC	3 cut(s)	392, 425, 512
RsaNI	GTAC	3 cut(s)	391, 424, 511
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	543, 591
SatI	GCNGC	5 cut(s)	99, 248, 251, 305, 328
Sau3AI	GATC	2 cut(s)	460, 493
Sau96I	GGNCC	2 cut(s)	238, 547
SchI	GAGTC	2 cut(s)	32, 485
ScrFI	CCNGG	4 cut(s)	59, 103, 395, 458
SinI	GGWCC	2 cut(s)	238, 547
Sse9I	AATT	5 cut(s)	409, 469, 539, 597, 608
SsiI	CCGC	6 cut(s)	99, 185, 248, 251, 259, 328
StyD4I	CCNGG	4 cut(s)	57, 101, 393, 456
StyI	CCWWGG	3 cut(s)	83, 365, 550
TaaI	ACNGT	3 cut(s)	138, 318, 740
TaiI	ACGT	3 cut(s)	80, 246, 684
TaqI	TCGA	2 cut(s)	155, 213
TaqII	GACCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	409, 469, 539, 597, 608
TatI	WGTACW	1 cut(s)	423
TauI	GCSGC	4 cut(s)	101, 250, 253, 330
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	543, 591
Tru9I	TTAA	2 cut(s)	543, 591
TscAI	CASTG	1 cut(s)	745
TseFI	GTSAC	2 cut(s)	16, 24
TseI	GCWGC	1 cut(s)	304
Tsp45I	GTSAC	2 cut(s)	16, 24
TspDTI	ATGAA	2 cut(s)	310, 650
TspGWI	ACGGA	3 cut(s)	143, 368, 498
TspRI	CASTG	1 cut(s)	745
VpaK11BI	GGWCC	2 cut(s)	238, 547
XapI	RAATTY	1 cut(s)	608
XmiI	GTMKAC	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.