Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006566

Physical Location & Seq

Genomic Coordinates Reverse (-)

21620832 .. 21622291

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0150800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAGAAAATCTCAGGCTTTTGCCTCTTCATCTTCGTCTTCCTTGTCTTCGGCGGCAGTGCGTCTGTTGAACGGAGTTTGGGCGTTGATGGGACTGTGTCGGTGGGCCAAGTTGATGTTGGTACACCATCGGAGGGATGCGGTGATTACTGTGAGGAGTGGGATCTGGGGAGCAGTCTCGGCGATCTCAGGGTTTTGGGGCAAGGTCTCACTGCAGATACGGTGGTGATGGGGGCTTGGTCGGATAGTTGGTTGATGGATAAGGGCGGAGGGGTTTTGGTTTCTTCTTCTGCTGGTGGCTTTGAATCTTCATCTACATGGGACTACGACGCTAGGCTGAAGAACATCGGATTTTGGTGCGAGGTGAGGGGATGGGGTTCTGGTGGTGATGGCAGAGCGATGGGATCGGTTTGTTGGGACTTCAATTGCGGTGTTCTGTTCGTCAGCGATGGCTATTGTAGTTTGGTATCCTCCATTGCAGGTTCTCGGGACGCGTCCGCCAGTGCTGTTGTCCAGCTCGTTGGCATCAGGATCCGGATCTGGGATCCGGGTGTGACAGGACCCGCCCCGGATTTCACCCTGAAATCCGAAGTGGACCTGCGGGGCCCACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

204

Amino Acids

21.34

Weight (kDa)

4.22

Isoelectric Point (pI)

25.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07440 AT3G07440 AT5G48530
fragaria_vesca	FvH4_2g17870
malus_domestica	MD10G1152600.v1.1
prunus_persica	Prupe.8G191100_v2.0.a1 Prupe.8G191100_v2.0.a1 Prupe.8G191300_v2.0.a1
pyrus_communis	pycom10g13160
rosa_chinensis	RchiOBHm_Chr6g0282891
rosa_laevigata	RLG00000012847 RLG00000012858
rosa_multiflora	Rmu_sc0000159.1_g000054
rosa_roxburghii	Rroxscaffold_7G00185870
rosa_rugosa	Rorug06G0150500 Rorug06G0150500 Rorug06G0150800 Rorug06G0150900
rosa_samantha	Rh6AG263800 Rh6AG264300 Rh6BG266700 Rh6BG267000 Rh6CG265900 Rh6DG258500
rosa_wichuraiana	Rw6G022780 Rw6G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	470, 606
AccII	CGCG	1 cut(s)	494
AccIII	TCCGGA	1 cut(s)	534
AciI	CCGC	7 cut(s)	54, 141, 267, 429, 498, 564, 601
AclWI	GGATC	7 cut(s)	171, 412, 526, 539, 539, 545, 552
AcuI	CTGAAG	1 cut(s)	359
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	134, 541
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	3 cut(s)	71, 305, 424
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	182, 212
AlwI	GGATC	7 cut(s)	171, 412, 526, 539, 539, 545, 552
Ama87I	CYCGRG	1 cut(s)	486
Aor13HI	TCCGGA	1 cut(s)	534
AoxI	GGCC	2 cut(s)	106, 604
ApaI	GGGCCC	1 cut(s)	608
AspS9I	GGNCC	5 cut(s)	106, 560, 595, 604, 605
AsuC2I	CCSGG	2 cut(s)	549, 569
AsuHPI	GGTGA	5 cut(s)	155, 238, 376, 398, 568
AvaI	CYCGRG	1 cut(s)	486
AvaII	GGWCC	2 cut(s)	560, 595
BaeGI	GKGCMC	1 cut(s)	608
BaeI	ACNNNNGTAYC	2 cut(s)	210, 243
BamHI	GGATCC	2 cut(s)	531, 544
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	2 cut(s)	31, 40
BccI	CCATC	8 cut(s)	83, 136, 223, 250, 366, 383, 394, 443
BciVI	GTATCC	1 cut(s)	478
BcnI	CCSGG	2 cut(s)	549, 569
BcoDI	GTCTC	2 cut(s)	182, 212
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	213
BfuAI	ACCTGC	2 cut(s)	470, 606
BfuI	GTATCC	1 cut(s)	478
BisI	GCNGC	1 cut(s)	55
BlsI	GCNGC	1 cut(s)	56
Bme1390I	CCNGG	2 cut(s)	549, 569
Bme18I	GGWCC	2 cut(s)	560, 595
BmeT110I	CYCGRG	1 cut(s)	486
BmgT120I	GGNCC	5 cut(s)	106, 560, 595, 604, 605
BmiI	GGNNCC	5 cut(s)	533, 546, 562, 605, 606
BmrFI	CCNGG	2 cut(s)	549, 569
BmsI	GCATC	2 cut(s)	128, 534
BpiI	GAAGAC	2 cut(s)	31, 40
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuMI	CCSGG	2 cut(s)	549, 569
BsaBI	GATNNNNATC	1 cut(s)	536
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	567
BsaWI	WCCGGW	1 cut(s)	534
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 541
Bse1I	ACTGG	1 cut(s)	501
Bse3DI	GCAATG	1 cut(s)	474
Bse8I	GATNNNNATC	1 cut(s)	536
BseAI	TCCGGA	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	567
BseGI	GGATG	2 cut(s)	143, 377
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	2 cut(s)	134, 541
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	2 cut(s)	27, 202
BseNI	ACTGG	1 cut(s)	501
BseRI	GAGGAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	494
BshFI	GGCC	2 cut(s)	108, 606
BsiHKCI	CYCGRG	1 cut(s)	486
BsiSI	CCGG	3 cut(s)	535, 548, 569
BslFI	GGGAC	4 cut(s)	106, 335, 431, 503
BslI	CCNNNNNNNGG	2 cut(s)	134, 541
BsmAI	GTCTC	2 cut(s)	182, 212
BsmFI	GGGAC	4 cut(s)	106, 335, 431, 503
BsnI	GGCC	2 cut(s)	108, 606
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	486
Bsp120I	GGGCCC	1 cut(s)	604
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp13I	TCCGGA	1 cut(s)	534
Bsp143I	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
BspACI	CCGC	7 cut(s)	54, 141, 267, 429, 498, 564, 601
BspANI	GGCC	2 cut(s)	108, 606
BspCNI	CTCAG	2 cut(s)	26, 201
BspEI	TCCGGA	1 cut(s)	534
BspFNI	CGCG	1 cut(s)	494
BspLI	GGNNCC	5 cut(s)	533, 546, 562, 605, 606
BspMAI	CTGCAG	1 cut(s)	217
BspMI	ACCTGC	2 cut(s)	470, 606
BspPI	GGATC	7 cut(s)	171, 412, 526, 539, 539, 545, 552
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	1 cut(s)	567
BssMI	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
Bst4CI	ACNGT	3 cut(s)	97, 152, 223
Bst6I	CTCTTC	1 cut(s)	32
BstDEI	CTNAG	3 cut(s)	13, 188, 612
BstF5I	GGATG	2 cut(s)	143, 377
BstFNI	CGCG	1 cut(s)	494
BstKTI	GATC	6 cut(s)	166, 187, 407, 534, 540, 547
BstMAI	GTCTC	2 cut(s)	182, 212
BstMBI	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
BstMWI	GCNNNNNNNGC	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	547, 567
BstSFI	CTRYAG	1 cut(s)	213
BstSLI	GKGCMC	1 cut(s)	608
BstUI	CGCG	1 cut(s)	494
BstV2I	GAAGAC	2 cut(s)	31, 40
BstX2I	RGATCY	4 cut(s)	163, 531, 537, 544
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	4 cut(s)	163, 531, 537, 544
BsuI	GTATCC	1 cut(s)	478
BsuRI	GGCC	2 cut(s)	108, 606
BtgZI	GCGATG	2 cut(s)	413, 462
BtsCI	GGATG	2 cut(s)	143, 377
BtsI	GCAGTG	2 cut(s)	64, 210
BtsIMutI	CAGTG	3 cut(s)	64, 210, 508
BveI	ACCTGC	2 cut(s)	470, 606
Cfr13I	GGNCC	5 cut(s)	106, 560, 595, 604, 605
CseI	GACGC	4 cut(s)	51, 338, 483, 500
Csp6I	GTAC	1 cut(s)	123
CviAII	CATG	1 cut(s)	318
CviJI	RGCY	8 cut(s)	18, 108, 236, 300, 337, 453, 517, 606
CviKI_1	RGCY	8 cut(s)	18, 108, 236, 300, 337, 453, 517, 606
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	3 cut(s)	13, 188, 612
DpnI	GATC	6 cut(s)	165, 186, 406, 533, 539, 546
DpnII	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
EciI	GGCGGA	2 cut(s)	282, 487
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	2 cut(s)	560, 595
Eco57I	CTGAAG	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	486
EcoO109I	RGGNCCY	2 cut(s)	560, 604
EcoT38I	GRGCYC	1 cut(s)	608
FaeI	CATG	1 cut(s)	321
FaiI	YATR	1 cut(s)	319
FaqI	GGGAC	4 cut(s)	106, 335, 431, 503
FatI	CATG	1 cut(s)	317
FauI	CCCGC	2 cut(s)	571, 594
Fnu4HI	GCNGC	1 cut(s)	55
FokI	GGATG	2 cut(s)	150, 384
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	1 cut(s)	55
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	108, 606
HapII	CCGG	3 cut(s)	535, 548, 569
HgaI	GACGC	4 cut(s)	51, 338, 483, 500
Hin1II	CATG	1 cut(s)	321
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	3 cut(s)	535, 548, 569
HphI	GGTGA	5 cut(s)	155, 238, 376, 398, 568
Hpy166II	GTNNAC	2 cut(s)	125, 595
Hpy188I	TCNGA	4 cut(s)	133, 244, 350, 589
Hpy188III	TCNNGA	3 cut(s)	488, 529, 535
Hpy8I	GTNNAC	2 cut(s)	125, 595
Hpy99I	CGWCG	1 cut(s)	332
HpyCH4III	ACNGT	3 cut(s)	97, 152, 223
HpyCH4V	TGCA	2 cut(s)	215, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	180
HpyF3I	CTNAG	3 cut(s)	13, 188, 612
Hsp92II	CATG	1 cut(s)	321
Kpn2I	TCCGGA	1 cut(s)	534
Kzo9I	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
LmnI	GCTCC	1 cut(s)	171
LweI	GCATC	2 cut(s)	128, 534
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	6 cut(s)	165, 186, 406, 533, 539, 546
MboI	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
MboII	GAAGA	8 cut(s)	19, 25, 31, 40, 276, 279, 300, 352
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	4 cut(s)	163, 531, 537, 544
MhlI	GDGCHC	1 cut(s)	608
MluCI	AATT	1 cut(s)	424
MluI	ACGCGT	1 cut(s)	492
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	35, 127, 148, 263, 355, 360, 481
MroI	TCCGGA	1 cut(s)	534
MslI	CAYNNNNRTG	1 cut(s)	316
MspI	CCGG	3 cut(s)	535, 548, 569
MspR9I	CCNGG	2 cut(s)	549, 569
MunI	CAATTG	1 cut(s)	424
MvnI	CGCG	1 cut(s)	494
MwoI	GCNNNNNNNGC	1 cut(s)	180
NciI	CCSGG	2 cut(s)	549, 569
NdeII	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
NlaIII	CATG	1 cut(s)	321
NlaIV	GGNNCC	5 cut(s)	533, 546, 562, 605, 606
NmeAIII	GCCGAG	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	553
PfeI	GAWTC	1 cut(s)	305
PflFI	GACNNNGTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	560
Psp5II	RGGWCCY	1 cut(s)	560
PspN4I	GGNNCC	5 cut(s)	533, 546, 562, 605, 606
PspOMI	GGGCCC	1 cut(s)	604
PspPI	GGNCC	5 cut(s)	106, 560, 595, 604, 605
PspPPI	RGGWCCY	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	217
PsuI	RGATCY	4 cut(s)	163, 531, 537, 544
PsyI	GACNNNGTC	1 cut(s)	97
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
RseI	CAYNNNNRTG	1 cut(s)	316
SatI	GCNGC	1 cut(s)	55
Sau3AI	GATC	6 cut(s)	163, 184, 404, 531, 537, 544
Sau96I	GGNCC	5 cut(s)	106, 560, 595, 604, 605
ScrFI	CCNGG	2 cut(s)	549, 569
SduI	GDGCHC	1 cut(s)	608
SetI	ASST	6 cut(s)	208, 366, 484, 519, 600, 613
SfaNI	GCATC	2 cut(s)	128, 534
SfcI	CTRYAG	1 cut(s)	213
SinI	GGWCC	2 cut(s)	560, 595
SmiMI	CAYNNNNRTG	1 cut(s)	316
Sse9I	AATT	1 cut(s)	424
SsiI	CCGC	7 cut(s)	54, 141, 267, 429, 498, 564, 601
SspMI	CTAG	1 cut(s)	333
StyD4I	CCNGG	2 cut(s)	547, 567
TaaI	ACNGT	3 cut(s)	97, 152, 223
TasI	AATT	1 cut(s)	424
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	1 cut(s)	305
TscAI	CASTG	3 cut(s)	64, 217, 508
TseFI	GTSAC	1 cut(s)	553
Tsp45I	GTSAC	1 cut(s)	553
TspDTI	ATGAA	2 cut(s)	19, 300
TspGWI	ACGGA	1 cut(s)	88
TspRI	CASTG	3 cut(s)	64, 217, 508
Tth111I	GACNNNGTC	1 cut(s)	97
VpaK11BI	GGWCC	2 cut(s)	560, 595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.