Prupe.8G191100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0006566
Physical Location & Seq
Reverse (-)
18575646 .. 18578262
2617 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G191100.1

Sequence Viewer

Length: 714 bp
ATGCTCTCCTTCGCAAAACGACTCAAGAACTCACCTTCATGCTTCCAGGCCGCCGTCGACCAAATCCGGTGGGTCCGGACCGAGTCCGGCCCGTCCCGGCGCCGGCAAAGGCACAAGTCTCCGGCCCTGGCTATGAGGAAGTCGGAGGAGAAGTCCGAGTGGTGGATAGTCGACGGCGAAATCCACGAGATCGGCGATCACGTGCCTCCACGTGAGCGGTTCGTCATTCCCAGAGATAACATCCCCAACAAGCGTCGAAAGCAGCTCAGAGAACAGTTCATGCGCCGCACTCGCCTTGTTCTCAAGGAAACGGAACATGAGCCTTGGTGCAAAAGGTACATGGAACTCTACCAGGAGCTTCGAGAAAATTGGGAGAGGCTGTATTGGGACGAGGGTTACTCCAAAAAAATTGCCATGGACCATGCGAATTACGACTCTGCTGAAGATGATGACCATGATTTCTCTCCGTACAGGAGCAAGCGGTCCCATAGCGAGCCATTCAAGGACAATGGTTTCGGAAACAGGCAAGGCGATACCTGGGAAAAGGTCAACCAGATTCGAGATAAGTTCGAGTATGACAGAGAAAGGAGAATGAGAGAGAAAGCATTTGCACCCATGTCTGGAGAACGTGCTTCTTCTAACTTCCATGATATGAACTCCCGGAGACAGCCATTTGACACCCACAGATACTTCCCAGATAATGAAAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

28.99

Weight (kDa)

9.26

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 99
AccBSI CCGCTC 1 cut(s) 217
AccI GTMKAC 2 cut(s) 57, 171
AccIII TCCGGA 1 cut(s) 75
AciI CCGC 4 cut(s) 51, 217, 286, 481
AcuI CTGAAG 1 cut(s) 462
AcvI CACGTG 2 cut(s) 202, 212
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 2 cut(s) 338, 470
AfiI CCNNNNNNNGG 3 cut(s) 102, 162, 620
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 4 cut(s) 45, 126, 351, 536
AluBI AGCT 2 cut(s) 265, 358
AluI AGCT 2 cut(s) 265, 358
Alw26I GTCTC 2 cut(s) 123, 658
Aor13HI TCCGGA 1 cut(s) 75
AoxI GGCC 3 cut(s) 48, 88, 123
ApeKI GCWGC 1 cut(s) 262
ArsI GACNNNNNNTTYG 2 cut(s) 497, 529
AspLEI GCGC 2 cut(s) 102, 285
AspS9I GGNCC 6 cut(s) 73, 78, 89, 124, 418, 483
AsuC2I CCSGG 2 cut(s) 97, 661
AsuHPI GGTGA 1 cut(s) 24
AvaII GGWCC 4 cut(s) 73, 78, 418, 483
BanI GGYRCC 1 cut(s) 99
BauI CACGAG 1 cut(s) 185
BbrPI CACGTG 2 cut(s) 202, 212
BbvI GCAGC 1 cut(s) 274
BceAI ACGGC 2 cut(s) 38, 190
BciT130I CCWGG 4 cut(s) 47, 128, 353, 538
BcnI CCSGG 2 cut(s) 97, 661
BcoDI GTCTC 2 cut(s) 123, 658
BfoI RGCGCY 1 cut(s) 103
BisI GCNGC 3 cut(s) 51, 263, 286
BlsI GCNGC 3 cut(s) 52, 264, 287
Bme1390I CCNGG 6 cut(s) 47, 97, 128, 353, 538, 661
Bme18I GGWCC 4 cut(s) 73, 78, 418, 483
BmgT120I GGNCC 6 cut(s) 73, 78, 89, 124, 418, 483
BmiI GGNNCC 3 cut(s) 74, 101, 485
BmrFI CCNGG 6 cut(s) 47, 97, 128, 353, 538, 661
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 642
BpuEI CTTGAG 2 cut(s) 8, 287
BpuMI CCSGG 2 cut(s) 97, 661
BsaAI YACGTR 2 cut(s) 202, 212
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 126, 323, 414, 537
BsaWI WCCGGW 2 cut(s) 66, 75
BsaXI ACNNNNNCTCC 4 cut(s) 137, 167, 365, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 102, 162, 620
Bse118I RCCGGY 1 cut(s) 102
BseAI TCCGGA 1 cut(s) 75
BseBI CCWGG 4 cut(s) 47, 128, 353, 538
BseDI CCNNGG 4 cut(s) 126, 323, 414, 537
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 3 cut(s) 102, 162, 620
BseMII CTCAG 1 cut(s) 280
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 274
BshFI GGCC 3 cut(s) 50, 90, 125
BshNI GGYRCC 1 cut(s) 99
BsiSI CCGG 7 cut(s) 67, 76, 87, 97, 103, 122, 661
BslFI GGGAC 3 cut(s) 79, 401, 469
BslI CCNNNNNNNGG 3 cut(s) 102, 162, 620
BsmAI GTCTC 2 cut(s) 123, 658
BsmFI GGGAC 3 cut(s) 79, 401, 469
BsnI GGCC 3 cut(s) 50, 90, 125
Bsp13I TCCGGA 1 cut(s) 75
Bsp143I GATC 2 cut(s) 189, 196
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 4 cut(s) 51, 217, 286, 481
BspANI GGCC 3 cut(s) 50, 90, 125
BspCNI CTCAG 1 cut(s) 279
BspEI TCCGGA 1 cut(s) 75
BspLI GGNNCC 3 cut(s) 74, 101, 485
BspT107I GGYRCC 1 cut(s) 99
BsrBI CCGCTC 1 cut(s) 217
BsrFI RCCGGY 1 cut(s) 102
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 4 cut(s) 126, 323, 414, 537
BssMI GATC 2 cut(s) 189, 196
BssNI GRCGYC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 185
BssT1I CCWWGG 2 cut(s) 323, 414
Bst2BI CACGAG 1 cut(s) 185
Bst2UI CCWGG 4 cut(s) 47, 128, 353, 538
Bst4CI ACNGT 1 cut(s) 276
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 2 cut(s) 202, 212
BstC8I GCNNGC 3 cut(s) 104, 479, 494
BstDEI CTNAG 1 cut(s) 266
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 103
BstHHI GCGC 2 cut(s) 102, 285
BstKTI GATC 2 cut(s) 192, 199
BstMAI GTCTC 2 cut(s) 123, 658
BstMBI GATC 2 cut(s) 189, 196
BstMWI GCNNNNNNNGC 2 cut(s) 259, 291
BstNI CCWGG 4 cut(s) 47, 128, 353, 538
BstSCI CCNGG 6 cut(s) 45, 95, 126, 351, 536, 659
BstV1I GCAGC 1 cut(s) 274
BsuRI GGCC 3 cut(s) 50, 90, 125
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 104, 479, 494
CfoI GCGC 2 cut(s) 102, 285
Cfr10I RCCGGY 1 cut(s) 102
Cfr13I GGNCC 6 cut(s) 73, 78, 89, 124, 418, 483
CpoI CGGWCCG 1 cut(s) 78
CseI GACGC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 337, 469
CspCI CAANNNNNGTGG 2 cut(s) 50, 85
CspI CGGWCCG 1 cut(s) 78
CviAII CATG 9 cut(s) 39, 280, 317, 340, 415, 422, 455, 616, 647
CviQI GTAC 2 cut(s) 337, 469
DdeI CTNAG 1 cut(s) 266
DinI GGCGCC 1 cut(s) 101
DpnI GATC 2 cut(s) 191, 198
DpnII GATC 2 cut(s) 189, 196
Eco130I CCWWGG 2 cut(s) 323, 414
Eco47I GGWCC 4 cut(s) 73, 78, 418, 483
Eco57I CTGAAG 1 cut(s) 462
Eco72I CACGTG 2 cut(s) 202, 212
EcoRII CCWGG 4 cut(s) 45, 126, 351, 536
EcoT14I CCWWGG 2 cut(s) 323, 414
EgeI GGCGCC 1 cut(s) 101
EheI GGCGCC 1 cut(s) 101
ErhI CCWWGG 2 cut(s) 323, 414
FaeI CATG 9 cut(s) 42, 283, 320, 343, 418, 425, 458, 619, 650
FaqI GGGAC 3 cut(s) 79, 401, 469
FatI CATG 9 cut(s) 38, 279, 316, 339, 414, 421, 454, 615, 646
FblI GTMKAC 2 cut(s) 57, 171
Fnu4HI GCNGC 3 cut(s) 51, 263, 286
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 3 cut(s) 51, 263, 286
GlaI GCGC 2 cut(s) 101, 284
GluI GCNGC 3 cut(s) 51, 263, 286
GsuI CTGGAG 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 103
HaeIII GGCC 3 cut(s) 50, 90, 125
HapII CCGG 7 cut(s) 67, 76, 87, 97, 103, 122, 661
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 102, 285
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 9 cut(s) 42, 283, 320, 343, 418, 425, 458, 619, 650
Hin6I GCGC 2 cut(s) 100, 283
HinP1I GCGC 2 cut(s) 100, 283
HincII GTYRAC 3 cut(s) 58, 172, 550
HindII GTYRAC 3 cut(s) 58, 172, 550
HinfI GANTC 4 cut(s) 21, 83, 434, 556
HpaII CCGG 7 cut(s) 67, 76, 87, 97, 103, 122, 661
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 3 cut(s) 58, 172, 550
Hpy188I TCNGA 4 cut(s) 145, 157, 269, 518
Hpy188III TCNNGA 5 cut(s) 25, 76, 362, 560, 621
Hpy8I GTNNAC 3 cut(s) 58, 172, 550
Hpy99I CGWCG 3 cut(s) 59, 176, 258
HpyAV CCTTC 2 cut(s) 19, 45
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4IV ACGT 3 cut(s) 201, 211, 628
HpyCH4V TGCA 2 cut(s) 330, 611
HpyF10VI GCNNNNNNNGC 2 cut(s) 259, 291
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 3 cut(s) 201, 211, 628
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 9 cut(s) 42, 283, 320, 343, 418, 425, 458, 619, 650
HspAI GCGC 2 cut(s) 100, 283
KasI GGCGCC 1 cut(s) 99
Kpn2I TCCGGA 1 cut(s) 75
KroI GCCGGC 1 cut(s) 102
KroNI GCCGGC 1 cut(s) 104
Kzo9I GATC 2 cut(s) 189, 196
LmnI GCTCC 2 cut(s) 355, 474
Lsp1109I GCAGC 1 cut(s) 274
MaeII ACGT 3 cut(s) 201, 211, 628
MaeIII GTNAC 1 cut(s) 395
MalI GATC 2 cut(s) 191, 198
MbiI CCGCTC 1 cut(s) 217
MboI GATC 2 cut(s) 189, 196
MboII GAAGA 2 cut(s) 455, 627
MluCI AATT 3 cut(s) 367, 408, 427
Mly113I GGCGCC 1 cut(s) 100
MlyI GAGTC 3 cut(s) 15, 92, 428
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 5 cut(s) 129, 139, 216, 369, 385
MroI TCCGGA 1 cut(s) 75
MroNI GCCGGC 1 cut(s) 102
MslI CAYNNNNRTG 1 cut(s) 37
MspI CCGG 7 cut(s) 67, 76, 87, 97, 103, 122, 661
MspR9I CCNGG 6 cut(s) 47, 97, 128, 353, 538, 661
MvaI CCWGG 4 cut(s) 47, 128, 353, 538
MwoI GCNNNNNNNGC 2 cut(s) 259, 291
NaeI GCCGGC 1 cut(s) 104
NarI GGCGCC 1 cut(s) 100
NciI CCSGG 2 cut(s) 97, 661
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 189, 196
NgoMIV GCCGGC 1 cut(s) 102
NlaIII CATG 9 cut(s) 42, 283, 320, 343, 418, 425, 458, 619, 650
NlaIV GGNNCC 3 cut(s) 74, 101, 485
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 198
PdiI GCCGGC 1 cut(s) 104
PfeI GAWTC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 82
PfoI TCCNGGA 1 cut(s) 659
PkrI GCNGC 3 cut(s) 52, 264, 287
PleI GAGTC 3 cut(s) 15, 91, 428
PluTI GGCGCC 1 cut(s) 103
PmaCI CACGTG 2 cut(s) 202, 212
PmlI CACGTG 2 cut(s) 202, 212
PpsI GAGTC 3 cut(s) 15, 91, 428
Ppu21I YACGTR 2 cut(s) 202, 212
Psp6I CCWGG 4 cut(s) 45, 126, 351, 536
PspCI CACGTG 2 cut(s) 202, 212
PspGI CCWGG 4 cut(s) 45, 126, 351, 536
PspN4I GGNNCC 3 cut(s) 74, 101, 485
PspPI GGNCC 6 cut(s) 73, 78, 89, 124, 418, 483
PsyI GACNNNGTC 1 cut(s) 82
RsaI GTAC 2 cut(s) 338, 470
RsaNI GTAC 2 cut(s) 337, 469
RseI CAYNNNNRTG 1 cut(s) 37
Rsr2I CGGWCCG 1 cut(s) 78
RsrII CGGWCCG 1 cut(s) 78
SalI GTCGAC 2 cut(s) 56, 170
SatI GCNGC 3 cut(s) 51, 263, 286
Sau3AI GATC 2 cut(s) 189, 196
Sau96I GGNCC 6 cut(s) 73, 78, 89, 124, 418, 483
SchI GAGTC 3 cut(s) 15, 92, 428
ScrFI CCNGG 6 cut(s) 47, 97, 128, 353, 538, 661
SetI ASST 9 cut(s) 37, 204, 214, 267, 338, 360, 539, 549, 631
SfoI GGCGCC 1 cut(s) 101
SinI GGWCC 4 cut(s) 73, 78, 418, 483
SmiMI CAYNNNNRTG 1 cut(s) 37
SmlI CTYRAG 2 cut(s) 23, 302
SmoI CTYRAG 2 cut(s) 23, 302
Sse9I AATT 3 cut(s) 367, 408, 427
SsiI CCGC 4 cut(s) 51, 217, 286, 481
SspDI GGCGCC 1 cut(s) 99
StyD4I CCNGG 6 cut(s) 45, 95, 126, 351, 536, 659
StyI CCWWGG 2 cut(s) 323, 414
TaaI ACNGT 1 cut(s) 276
TaiI ACGT 3 cut(s) 204, 214, 631
TaqI TCGA 6 cut(s) 57, 171, 256, 361, 559, 570
TaqII GACCGA 1 cut(s) 95
TasI AATT 3 cut(s) 367, 408, 427
TauI GCSGC 2 cut(s) 53, 288
TfiI GAWTC 1 cut(s) 556
TseI GCWGC 1 cut(s) 262
TspDTI ATGAA 3 cut(s) 27, 268, 668
TspGWI ACGGA 2 cut(s) 326, 456
Tth111I GACNNNGTC 1 cut(s) 82
VpaK11BI GGWCC 4 cut(s) 73, 78, 418, 483
XmiI GTMKAC 2 cut(s) 57, 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.