Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006566

Physical Location & Seq

Genomic Coordinates Reverse (-)

15333062 .. 15337184

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTCTCCCTCGCGAAAAGGCTGAAGACGTTGCCGTGGTGCTTGGAGGCCGCCGGCAGCCAACTCCGGGGAATCCGGACGGAGGCGCGGTCGCCGAGGCGGCGGTTCAGGTCTCCGGCGATGGCGATGAGGAAGGCGGAGGAGAAGTCGGAGTGGTGGATAGTCGACGGCGAAATGCACGAAATCGGCGACCACGTGCCGCCGCGTGAGCGGTTCGTGATTCCGAGAGATAACATCCCCAACAAGCGCCGGAAGCAGCTCCGGGAACAGTTCATGCGCCGCACTCGCCTCGTTCTCAAGGAGACGGAGCATGAGCCTTGGTGCAAAAAGTATATGGAGCTGTACCAGGAGCTTAGAGAGAATTGGGAAAGGCTGTACTGGGACGAAGGTTACTCGAAGAAGCTTGCGCAGGATCATGCTAATTACGAGTCTGCTGAAGATGATGATCAAGACTTCTCTCCATACCGGAGCAAGCAATCTCATTTCGAGCAATTTAAGGACCATGGCTCTGGGAGTAGGCAAGGCGATACATGGGAAAAGGTTAACCAAATTAGGGATAAATTTGAGTATGACAGGGAAAGGAGGATGAAAGAAAAAGCATTTGCACCTATGCATGGAGAAGTTTCTTCTAACATCCATGATATGAACTCCAGAAGACAGCCATTTGACAGCCAGAGATACTTTTCCGAAAGCGACAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

28.48

Weight (kDa)

8.95

Isoelectric Point (pI)

69.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07440 AT3G07440 AT5G48530
fragaria_vesca	FvH4_2g17870
malus_domestica	MD10G1152600.v1.1
prunus_persica	Prupe.8G191100_v2.0.a1 Prupe.8G191100_v2.0.a1 Prupe.8G191300_v2.0.a1
pyrus_communis	pycom10g13160
rosa_chinensis	RchiOBHm_Chr6g0282891
rosa_laevigata	RLG00000012847 RLG00000012858
rosa_multiflora	Rmu_sc0000159.1_g000054
rosa_roxburghii	Rroxscaffold_7G00185870
rosa_rugosa	Rorug06G0150500 Rorug06G0150500 Rorug06G0150800 Rorug06G0150900
rosa_samantha	Rh6AG263800 Rh6AG264300 Rh6BG266700 Rh6BG267000 Rh6CG265900 Rh6DG258500
rosa_wichuraiana	Rw6G022780 Rw6G022870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	3 cut(s)	14, 88, 205
AccIII	TCCGGA	1 cut(s)	75
AciI	CCGC	9 cut(s)	51, 88, 100, 103, 137, 200, 203, 211, 280
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	2 cut(s)	44, 456
AcvI	CACGTG	1 cut(s)	196
AfaI	GTAC	2 cut(s)	344, 377
AfiI	CCNNNNNNNGG	4 cut(s)	67, 82, 553, 614
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	4 cut(s)	259, 340, 352, 403
AluI	AGCT	4 cut(s)	259, 340, 352, 403
Alw26I	GTCTC	2 cut(s)	117, 296
AlwI	GGATC	1 cut(s)	420
Aor13HI	TCCGGA	1 cut(s)	75
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	2 cut(s)	57, 256
ApoI	RAATTY	1 cut(s)	560
AspLEI	GCGC	4 cut(s)	88, 249, 279, 409
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	2 cut(s)	68, 263
AvaII	GGWCC	1 cut(s)	499
BbrPI	CACGTG	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	32, 661
BbvI	GCAGC	2 cut(s)	69, 268
BccI	CCATC	1 cut(s)	115
BceAI	ACGGC	2 cut(s)	19, 184
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BciT130I	CCWGG	1 cut(s)	347
BclI	TGATCA	1 cut(s)	445
BcnI	CCSGG	2 cut(s)	68, 263
BcoDI	GTCTC	2 cut(s)	117, 296
BfoI	RGCGCY	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	100
BisI	GCNGC	7 cut(s)	51, 58, 101, 200, 203, 257, 280
BlsI	GCNGC	7 cut(s)	52, 59, 102, 201, 204, 258, 281
Bme1390I	CCNGG	3 cut(s)	68, 263, 347
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	1 cut(s)	499
BmrFI	CCNGG	3 cut(s)	68, 263, 347
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	32, 661
BpmI	CTGGAG	1 cut(s)	634
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	68, 263
BsaAI	YACGTR	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	444
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	5 cut(s)	35, 67, 95, 317, 502
BsaWI	WCCGGW	2 cut(s)	75, 465
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 131, 161
Bsc4I	CCNNNNNNNGG	4 cut(s)	67, 82, 553, 614
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	383
Bse8I	GATNNNNATC	1 cut(s)	444
BseAI	TCCGGA	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	5 cut(s)	35, 67, 95, 317, 502
BseGI	GGATG	3 cut(s)	234, 591, 633
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	4 cut(s)	67, 82, 553, 614
BseNI	ACTGG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	2 cut(s)	69, 268
Bsh1236I	CGCG	3 cut(s)	14, 88, 205
Bsh1285I	CGRYCG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	50
BsiEI	CGRYCG	1 cut(s)	92
BsiSI	CCGG	7 cut(s)	54, 67, 76, 116, 250, 262, 466
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	4 cut(s)	67, 82, 553, 614
BsmAI	GTCTC	2 cut(s)	117, 296
BsmBI	CGTCTC	1 cut(s)	296
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	50
Bso31I	GGTCTC	1 cut(s)	117
Bsp13I	TCCGGA	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	412, 445
Bsp19I	CCATGG	1 cut(s)	502
Bsp68I	TCGCGA	1 cut(s)	14
BspACI	CCGC	9 cut(s)	51, 88, 100, 103, 137, 200, 203, 211, 280
BspANI	GGCC	1 cut(s)	50
BspEI	TCCGGA	1 cut(s)	75
BspFNI	CGCG	3 cut(s)	14, 88, 205
BspPI	GGATC	1 cut(s)	420
BspTNI	GGTCTC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	211
BsrFI	RCCGGY	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	383
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	5 cut(s)	35, 67, 95, 317, 502
BssMI	GATC	2 cut(s)	412, 445
BssT1I	CCWWGG	2 cut(s)	317, 502
Bst2UI	CCWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	270
BstBAI	YACGTR	1 cut(s)	196
BstC8I	GCNNGC	3 cut(s)	55, 405, 473
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	2 cut(s)	35, 502
BstF5I	GGATG	3 cut(s)	234, 591, 633
BstFNI	CGCG	3 cut(s)	14, 88, 205
BstH2I	RGCGCY	1 cut(s)	250
BstHHI	GCGC	4 cut(s)	88, 249, 279, 409
BstKTI	GATC	2 cut(s)	415, 448
BstMAI	GTCTC	2 cut(s)	117, 296
BstMBI	GATC	2 cut(s)	412, 445
BstMCI	CGRYCG	1 cut(s)	92
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 208, 253, 285
BstNI	CCWGG	1 cut(s)	347
BstSCI	CCNGG	3 cut(s)	66, 261, 345
BstUI	CGCG	3 cut(s)	14, 88, 205
BstV1I	GCAGC	2 cut(s)	69, 268
BstV2I	GAAGAC	2 cut(s)	32, 661
BstXI	CCANNNNNNTGG	1 cut(s)	509
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	2 cut(s)	35, 502
BtgZI	GCGATG	2 cut(s)	134, 140
BtsCI	GGATG	3 cut(s)	234, 591, 633
BtuMI	TCGCGA	1 cut(s)	14
Cac8I	GCNNGC	3 cut(s)	55, 405, 473
CfoI	GCGC	4 cut(s)	88, 249, 279, 409
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	1 cut(s)	499
Csp6I	GTAC	2 cut(s)	343, 376
CviAII	CATG	7 cut(s)	274, 311, 416, 503, 531, 614, 638
CviQI	GTAC	2 cut(s)	343, 376
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	414, 447
DpnII	GATC	2 cut(s)	412, 445
EciI	GGCGGA	1 cut(s)	152
Eco130I	CCWWGG	2 cut(s)	317, 502
Eco31I	GGTCTC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	2 cut(s)	44, 456
Eco72I	CACGTG	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	317, 502
EcoT22I	ATGCAT	1 cut(s)	615
ErhI	CCWWGG	2 cut(s)	317, 502
Esp3I	CGTCTC	1 cut(s)	296
FaeI	CATG	7 cut(s)	277, 314, 419, 506, 534, 617, 641
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	7 cut(s)	273, 310, 415, 502, 530, 613, 637
FbaI	TGATCA	1 cut(s)	445
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	7 cut(s)	51, 58, 101, 200, 203, 257, 280
FokI	GGATG	3 cut(s)	221, 598, 620
Fsp4HI	GCNGC	7 cut(s)	51, 58, 101, 200, 203, 257, 280
FspI	TGCGCA	1 cut(s)	408
GlaI	GCGC	4 cut(s)	87, 248, 278, 408
GluI	GCNGC	7 cut(s)	51, 58, 101, 200, 203, 257, 280
GsuI	CTGGAG	1 cut(s)	634
HaeII	RGCGCY	1 cut(s)	250
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	7 cut(s)	54, 67, 76, 116, 250, 262, 466
HhaI	GCGC	4 cut(s)	88, 249, 279, 409
Hin1II	CATG	7 cut(s)	277, 314, 419, 506, 534, 617, 641
Hin6I	GCGC	4 cut(s)	86, 247, 277, 407
HinP1I	GCGC	4 cut(s)	86, 247, 277, 407
HincII	GTYRAC	2 cut(s)	166, 544
HindII	GTYRAC	2 cut(s)	166, 544
HindIII	AAGCTT	1 cut(s)	401
HinfI	GANTC	3 cut(s)	72, 220, 428
HpaI	GTTAAC	1 cut(s)	544
HpaII	CCGG	7 cut(s)	54, 67, 76, 116, 250, 262, 466
Hpy166II	GTNNAC	2 cut(s)	166, 544
Hpy188I	TCNGA	3 cut(s)	151, 225, 688
Hpy188III	TCNNGA	5 cut(s)	13, 76, 217, 449, 651
Hpy8I	GTNNAC	2 cut(s)	166, 544
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	127, 380
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	2 cut(s)	29, 195
HpyCH4V	TGCA	4 cut(s)	178, 324, 605, 613
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 208, 253, 285
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	2 cut(s)	29, 195
Hsp92II	CATG	7 cut(s)	277, 314, 419, 506, 534, 617, 641
HspAI	GCGC	4 cut(s)	86, 247, 277, 407
Kpn2I	TCCGGA	1 cut(s)	75
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	1 cut(s)	445
KspAI	GTTAAC	1 cut(s)	544
Kzo9I	GATC	2 cut(s)	412, 445
LmnI	GCTCC	5 cut(s)	264, 307, 337, 349, 468
Lsp1109I	GCAGC	2 cut(s)	69, 268
MaeII	ACGT	2 cut(s)	29, 195
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	2 cut(s)	414, 447
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	2 cut(s)	412, 445
MboII	GAAGA	5 cut(s)	37, 409, 449, 618, 666
MluCI	AATT	5 cut(s)	361, 421, 491, 549, 560
MlyI	GAGTC	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	8 cut(s)	20, 40, 76, 90, 123, 133, 299, 576
Mph1103I	ATGCAT	1 cut(s)	615
MroI	TCCGGA	1 cut(s)	75
MroNI	GCCGGC	1 cut(s)	53
MseI	TTAA	2 cut(s)	495, 543
MspI	CCGG	7 cut(s)	54, 67, 76, 116, 250, 262, 466
MspR9I	CCNGG	3 cut(s)	68, 263, 347
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	3 cut(s)	14, 88, 205
MwoI	GCNNNNNNNGC	4 cut(s)	100, 208, 253, 285
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	2 cut(s)	68, 263
NcoI	CCATGG	1 cut(s)	502
NdeII	GATC	2 cut(s)	412, 445
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	7 cut(s)	277, 314, 419, 506, 534, 617, 641
NmeAIII	GCCGAG	1 cut(s)	120
NruI	TCGCGA	1 cut(s)	14
NsbI	TGCGCA	1 cut(s)	408
NsiI	ATGCAT	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	2 cut(s)	186, 192
PdiI	GCCGGC	1 cut(s)	55
PfeI	GAWTC	2 cut(s)	72, 220
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	7 cut(s)	52, 59, 102, 201, 204, 258, 281
PleI	GAGTC	1 cut(s)	436
PmaCI	CACGTG	1 cut(s)	196
PmlI	CACGTG	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	499
RruI	TCGCGA	1 cut(s)	14
RsaI	GTAC	2 cut(s)	344, 377
RsaNI	GTAC	2 cut(s)	343, 376
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	495, 543
SatI	GCNGC	7 cut(s)	51, 58, 101, 200, 203, 257, 280
Sau3AI	GATC	2 cut(s)	412, 445
Sau96I	GGNCC	1 cut(s)	499
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	3 cut(s)	68, 263, 347
SinI	GGWCC	1 cut(s)	499
SmlI	CTYRAG	1 cut(s)	296
SmoI	CTYRAG	1 cut(s)	296
Sse9I	AATT	5 cut(s)	361, 421, 491, 549, 560
SsiI	CCGC	9 cut(s)	51, 88, 100, 103, 137, 200, 203, 211, 280
StyD4I	CCNGG	3 cut(s)	66, 261, 345
StyI	CCWWGG	2 cut(s)	317, 502
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	2 cut(s)	32, 198
TaqI	TCGA	3 cut(s)	165, 395, 486
TasI	AATT	5 cut(s)	361, 421, 491, 549, 560
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	5 cut(s)	53, 103, 202, 205, 282
TfiI	GAWTC	2 cut(s)	72, 220
Tru1I	TTAA	2 cut(s)	495, 543
Tru9I	TTAA	2 cut(s)	495, 543
TseI	GCWGC	2 cut(s)	57, 256
TspDTI	ATGAA	3 cut(s)	262, 602, 659
TspGWI	ACGGA	2 cut(s)	95, 320
VpaK11BI	GGWCC	1 cut(s)	499
XapI	RAATTY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	165
Zsp2I	ATGCAT	1 cut(s)	615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.