AT5G48530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0006566
Physical Location & Seq
Reverse (-)
19666790 .. 19668830
2041 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48530.1

Sequence Viewer

Length: 588 bp
ATGCTCTCCGTCGCAAGACGTCTCGGTTCGGCGACGCCGTCGCTTCAAAACGGAGCTTCCTTACTCCGGTTCATGAGAACGGAGGCAAGTCAGCCAAGACGGCGGAACAAATTTCCCTCTCTATCGCCACTCAAGAAGAAAGAGGAGAAATCAGAGTGGTGGATCGTCGACGGAGAGATGCACGAGATCGGAGATCACGTACCTCTGCGTGAGCGTTTCACAATCCCGAGAGACAATATCCCCAATAAGCGCCGGAAACAGCTCCGTGAGCAGTTCATGCGACGAACTCGTCTCGTTCTTAAAGAATCGGAGCATGAGCCATGGTGCAAGAAGTACATGGAATTGTATAATGAGGTTAGAGAAAACTGGGAGAGGCTTTATTGGGATGAAGGATATTCTAAGAAAATTGCGAGAGATCATGCTAATTATGAGTCTGCTGAAGAAGATGATGAAGATTTTAATCCATACAGGAATAGGCGTCCTTATAATGATTCAATAAAGCAGGAGCAGGGGTTTAATAGAACAACACAAGGTGATGATAACTGGGAGAAAGTGAGTCAAATCCGGGACAAATTTGAGTATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

23.77

Weight (kDa)

8.87

Isoelectric Point (pI)

61.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AasI GACNNNNNNGTC 1 cut(s) 288
AatII GACGTC 1 cut(s) 22
AccI GTMKAC 1 cut(s) 168
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 170
AcsI RAATTY 2 cut(s) 110, 572
AcuI CTGAAG 1 cut(s) 459
AcyI GRCGYC 3 cut(s) 19, 35, 478
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 2 cut(s) 201, 335
AfiI CCNNNNNNNGG 1 cut(s) 66
AgsI TTSAA 2 cut(s) 47, 495
AluBI AGCT 2 cut(s) 56, 262
AluI AGCT 2 cut(s) 56, 262
Alw26I GTCTC 3 cut(s) 26, 225, 296
AlwI GGATC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 226
ApoI RAATTY 2 cut(s) 110, 572
AspLEI GCGC 1 cut(s) 252
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 226
BauI CACGAG 1 cut(s) 182
BceAI ACGGC 2 cut(s) 22, 116
BcnI CCSGG 1 cut(s) 566
BcoDI GTCTC 3 cut(s) 26, 225, 296
BfoI RGCGCY 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 100
Bme1390I CCNGG 1 cut(s) 566
BmeT110I CYCGRG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 566
BmrI ACTGGG 2 cut(s) 376, 553
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 2 cut(s) 376, 553
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 566
BsaAI YACGTR 1 cut(s) 199
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 3 cut(s) 19, 35, 478
BsaJI CCNNGG 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 66
BsaXI ACNNNNNCTCC 4 cut(s) 183, 213, 497, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 66
Bse1I ACTGG 2 cut(s) 371, 548
Bse8I GATNNNNATC 1 cut(s) 459
BseDI CCNNGG 1 cut(s) 320
BseGI GGATG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 371, 548
BseRI GAGGAG 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 3 cut(s) 67, 253, 565
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 1 cut(s) 66
BsmAI GTCTC 3 cut(s) 26, 225, 296
BsmBI CGTCTC 2 cut(s) 26, 296
BsmFI GGGAC 1 cut(s) 581
BsoBI CYCGRG 1 cut(s) 226
Bsp143I GATC 4 cut(s) 162, 186, 193, 415
Bsp19I CCATGG 1 cut(s) 320
BspACI CCGC 1 cut(s) 103
BspHI TCATGA 1 cut(s) 72
BspPI GGATC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 371, 548
BssECI CCNNGG 1 cut(s) 320
BssMI GATC 4 cut(s) 162, 186, 193, 415
BssNI GRCGYC 3 cut(s) 19, 35, 478
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 320
Bst2BI CACGAG 1 cut(s) 182
BstACI GRCGYC 3 cut(s) 19, 35, 478
BstAPI GCANNNNNTGC 1 cut(s) 277
BstBAI YACGTR 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 399
BstDSI CCRYGG 1 cut(s) 320
BstF5I GGATG 1 cut(s) 391
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 4 cut(s) 165, 189, 196, 418
BstMAI GTCTC 3 cut(s) 26, 225, 296
BstMBI GATC 4 cut(s) 162, 186, 193, 415
BstMWI GCNNNNNNNGC 3 cut(s) 100, 268, 277
BstSCI CCNGG 1 cut(s) 564
BtgI CCRYGG 1 cut(s) 320
BtsCI GGATG 1 cut(s) 391
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 252
CseI GACGC 2 cut(s) 43, 467
Csp6I GTAC 2 cut(s) 200, 334
CviAII CATG 6 cut(s) 73, 277, 314, 321, 337, 419
CviJI RGCY 5 cut(s) 56, 94, 262, 319, 376
CviKI_1 RGCY 5 cut(s) 56, 94, 262, 319, 376
CviQI GTAC 2 cut(s) 200, 334
DdeI CTNAG 1 cut(s) 399
DpnI GATC 4 cut(s) 164, 188, 195, 417
DpnII GATC 4 cut(s) 162, 186, 193, 415
DraIII CACNNNGTG 1 cut(s) 533
DrdI GACNNNNNNGTC 1 cut(s) 288
DseDI GACNNNNNNGTC 1 cut(s) 288
EciI GGCGGA 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 459
Eco88I CYCGRG 1 cut(s) 226
EcoT14I CCWWGG 1 cut(s) 320
ErhI CCWWGG 1 cut(s) 320
Esp3I CGTCTC 2 cut(s) 26, 296
FaeI CATG 6 cut(s) 76, 280, 317, 324, 340, 422
FaqI GGGAC 1 cut(s) 581
FatI CATG 6 cut(s) 72, 276, 313, 320, 336, 418
FblI GTMKAC 1 cut(s) 168
FokI GGATG 1 cut(s) 398
GlaI GCGC 1 cut(s) 251
HaeII RGCGCY 1 cut(s) 253
HapII CCGG 3 cut(s) 67, 253, 565
HgaI GACGC 2 cut(s) 43, 467
HhaI GCGC 1 cut(s) 252
Hin1I GRCGYC 3 cut(s) 19, 35, 478
Hin1II CATG 6 cut(s) 76, 280, 317, 324, 340, 422
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 4 cut(s) 305, 431, 491, 556
HpaII CCGG 3 cut(s) 67, 253, 565
HphI GGTGA 1 cut(s) 545
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 154, 191, 310
Hpy188III TCNNGA 3 cut(s) 73, 133, 226
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 6 cut(s) 14, 37, 43, 170, 173, 285
HpyAV CCTTC 1 cut(s) 383
HpyCH4IV ACGT 2 cut(s) 19, 198
HpyCH4V TGCA 2 cut(s) 181, 327
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 268, 277
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 2 cut(s) 19, 198
Hsp92I GRCGYC 3 cut(s) 19, 35, 478
Hsp92II CATG 6 cut(s) 76, 280, 317, 324, 340, 422
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 162, 186, 193, 415
LmnI GCTCC 4 cut(s) 53, 267, 310, 505
LpnPI CCDG 8 cut(s) 80, 266, 352, 454, 488, 494, 529, 578
LweI GCATC 1 cut(s) 168
MaeII ACGT 2 cut(s) 19, 198
MalI GATC 4 cut(s) 164, 188, 195, 417
MboI GATC 4 cut(s) 162, 186, 193, 415
MboII GAAGA 4 cut(s) 148, 452, 455, 464
MluCI AATT 5 cut(s) 110, 341, 405, 424, 572
MlyI GAGTC 2 cut(s) 440, 565
MnlI CCTC 6 cut(s) 76, 127, 136, 213, 346, 366
MseI TTAA 3 cut(s) 300, 459, 516
MspI CCGG 3 cut(s) 67, 253, 565
MspR9I CCNGG 1 cut(s) 566
MwoI GCNNNNNNNGC 3 cut(s) 100, 268, 277
NciI CCSGG 1 cut(s) 566
NcoI CCATGG 1 cut(s) 320
NdeII GATC 4 cut(s) 162, 186, 193, 415
NlaIII CATG 6 cut(s) 76, 280, 317, 324, 340, 422
PagI TCATGA 1 cut(s) 72
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 195
PfeI GAWTC 2 cut(s) 305, 491
PflFI GACNNNGTC 1 cut(s) 37
PfoI TCCNGGA 1 cut(s) 564
PleI GAGTC 2 cut(s) 439, 564
PpsI GAGTC 2 cut(s) 439, 564
Ppu21I YACGTR 1 cut(s) 199
PsiI TTATAA 1 cut(s) 486
PsyI GACNNNGTC 1 cut(s) 37
RsaI GTAC 2 cut(s) 201, 335
RsaNI GTAC 2 cut(s) 200, 334
SalI GTCGAC 1 cut(s) 167
SaqAI TTAA 3 cut(s) 300, 459, 516
Sau3AI GATC 4 cut(s) 162, 186, 193, 415
SchI GAGTC 2 cut(s) 440, 565
ScrFI CCNGG 1 cut(s) 566
SetI ASST 7 cut(s) 22, 58, 201, 205, 264, 357, 535
SfaNI GCATC 1 cut(s) 168
SgrDI CGTCGACG 1 cut(s) 167
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 5 cut(s) 110, 341, 405, 424, 572
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 320
TaiI ACGT 2 cut(s) 22, 201
TaqI TCGA 1 cut(s) 168
TasI AATT 5 cut(s) 110, 341, 405, 424, 572
TatI WGTACW 1 cut(s) 333
TfiI GAWTC 2 cut(s) 305, 491
Tru1I TTAA 3 cut(s) 300, 459, 516
Tru9I TTAA 3 cut(s) 300, 459, 516
TspDTI ATGAA 4 cut(s) 61, 265, 402, 465
TspGWI ACGGA 4 cut(s) 66, 95, 186, 254
Tth111I GACNNNGTC 1 cut(s) 37
XapI RAATTY 2 cut(s) 110, 572
XmiI GTMKAC 1 cut(s) 168
ZraI GACGTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.