Rorug06G0150900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0006566
Physical Location & Seq
Reverse (-)
21628472 .. 21629399
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0150900.1

Sequence Viewer

Length: 432 bp
ATGGCAACCCTTCAAATTTTGGTGTCTAAGATGCTCAGTTTTGTGGTAGTGCTTACTCTCGAACCGTTTCAAAGGCCCGGTGACCTGCGACTGGGTCCAACAGTACTCTCACCATTCGGCCACCGATTTACCTGCATGTGGACTTTTTCTGGCAACTCCAGCTGCGGTCTAGCTTGCTCGACAACTCCGGGAGCTCTACACGTCTATGTCAGTAGTCTTTCGATTCAATGTTTGCTGCCACCACCCATACCACTGTCTGTGGTGGTGGTCTCGAGCTTCCATAGGCCATTTCTGTGGTGGAGAAAGGAGAGCGAAGGACTAATCTGTCTAGGTTGCCGTGTCTTCATCGAAAAGCAAACCTTCAATTCAGGTTTGTTGAGTAAAATTGTTGGTGAATCTGTGTTCAAGGCCAGTGTCGGTATTAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.63

Weight (kDa)

9.27

Isoelectric Point (pI)

50.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 324
Acc36I ACCTGC 2 cut(s) 93, 140
AciI CCGC 1 cut(s) 165
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 105
AfiI CCNNNNNNNGG 2 cut(s) 91, 138
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 5 cut(s) 14, 71, 227, 364, 406
AjiI CACGTC 1 cut(s) 202
AluBI AGCT 4 cut(s) 162, 173, 194, 276
AluI AGCT 4 cut(s) 162, 173, 194, 276
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 4 cut(s) 74, 118, 284, 408
ApeKI GCWGC 2 cut(s) 162, 235
ApoI RAATTY 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 75, 95
AsuC2I CCSGG 2 cut(s) 78, 189
AsuHPI GGTGA 3 cut(s) 92, 102, 404
AvaI CYCGRG 1 cut(s) 271
AvaII GGWCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 334
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 2 cut(s) 149, 222
BceAI ACGGC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BcnI CCSGG 2 cut(s) 78, 189
BcoDI GTCTC 1 cut(s) 274
BfaI CTAG 2 cut(s) 170, 329
BfuAI ACCTGC 2 cut(s) 93, 140
BisI GCNGC 2 cut(s) 163, 236
BlsI GCNGC 2 cut(s) 164, 237
BmcAI AGTACT 1 cut(s) 105
Bme1390I CCNGG 2 cut(s) 78, 189
Bme18I GGWCC 1 cut(s) 95
BmeT110I CYCGRG 1 cut(s) 271
BmgBI CACGTC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 75, 95
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 2 cut(s) 78, 189
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 334
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 2 cut(s) 78, 189
BsaI GGTCTC 1 cut(s) 274
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 138
Bse1I ACTGG 2 cut(s) 96, 411
BseLI CCNNNNNNNGG 2 cut(s) 91, 138
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 2 cut(s) 96, 411
BseXI GCAGC 2 cut(s) 149, 222
BshFI GGCC 4 cut(s) 76, 120, 286, 410
BsiHKAI GWGCWC 1 cut(s) 196
BsiHKCI CYCGRG 1 cut(s) 271
BsiSI CCGG 2 cut(s) 78, 188
BslI CCNNNNNNNGG 2 cut(s) 91, 138
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 4 cut(s) 76, 120, 286, 410
Bso31I GGTCTC 1 cut(s) 274
BsoBI CYCGRG 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 196
BspACI CCGC 1 cut(s) 165
BspANI GGCC 4 cut(s) 76, 120, 286, 410
BspCNI CTCAG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 96
BspMI ACCTGC 2 cut(s) 93, 140
BspTNI GGTCTC 1 cut(s) 274
BsrI ACTGG 2 cut(s) 96, 411
Bst4CI ACNGT 3 cut(s) 66, 103, 255
BstC8I GCNNGC 1 cut(s) 175
BstDEI CTNAG 2 cut(s) 27, 35
BstEII GGTNACC 1 cut(s) 80
BstMAI GTCTC 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 139
BstPI GGTNACC 1 cut(s) 80
BstSCI CCNGG 2 cut(s) 76, 187
BstV1I GCAGC 2 cut(s) 149, 222
BstV2I GAAGAC 1 cut(s) 334
BstXI CCANNNNNNTGG 1 cut(s) 294
BsuRI GGCC 4 cut(s) 76, 120, 286, 410
BtrI CACGTC 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 251, 418
BveI ACCTGC 2 cut(s) 93, 140
Cac8I GCNNGC 1 cut(s) 175
Cfr13I GGNCC 2 cut(s) 75, 95
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 136
CviJI RGCY 8 cut(s) 76, 120, 162, 173, 194, 276, 286, 410
CviKI_1 RGCY 8 cut(s) 76, 120, 162, 173, 194, 276, 286, 410
CviQI GTAC 1 cut(s) 104
DdeI CTNAG 2 cut(s) 27, 35
DrdI GACNNNNNNGTC 1 cut(s) 324
DseDI GACNNNNNNGTC 1 cut(s) 324
EaeI YGGCCR 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 196
Eco31I GGTCTC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 80
EcoICRI GAGCTC 1 cut(s) 194
EcoO65I GGTNACC 1 cut(s) 80
EcoT38I GRGCYC 1 cut(s) 196
FaeI CATG 1 cut(s) 139
FaiI YATR 4 cut(s) 137, 207, 248, 282
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 163, 236
FriOI GRGCYC 1 cut(s) 196
Fsp4HI GCNGC 2 cut(s) 163, 236
FspBI CTAG 2 cut(s) 170, 329
GluI GCNGC 2 cut(s) 163, 236
GsuI CTGGAG 1 cut(s) 142
HaeIII GGCC 4 cut(s) 76, 120, 286, 410
HapII CCGG 2 cut(s) 78, 188
Hin1II CATG 1 cut(s) 139
HinfI GANTC 2 cut(s) 223, 395
HpaII CCGG 2 cut(s) 78, 188
HphI GGTGA 3 cut(s) 92, 102, 404
Hpy166II GTNNAC 1 cut(s) 141
Hpy188III TCNNGA 2 cut(s) 59, 271
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 20, 308, 370
HpyCH4III ACNGT 3 cut(s) 66, 103, 255
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 159
HpyF3I CTNAG 2 cut(s) 27, 35
HpySE526I ACGT 1 cut(s) 201
Hsp92II CATG 1 cut(s) 139
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 9 cut(s) 77, 91, 98, 135, 145, 172, 201, 354, 424
Lsp1109I GCAGC 2 cut(s) 149, 222
LweI GCATC 1 cut(s) 21
MaeI CTAG 2 cut(s) 170, 329
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 80
MboII GAAGA 1 cut(s) 334
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 3 cut(s) 15, 364, 384
MmeI TCCRAC 1 cut(s) 122
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 2 cut(s) 423, 430
MslI CAYNNNNRTG 2 cut(s) 204, 292
MspA1I CMGCKG 1 cut(s) 162
MspI CCGG 2 cut(s) 78, 188
MspR9I CCNGG 2 cut(s) 78, 189
MwoI GCNNNNNNNGC 1 cut(s) 159
NciI CCSGG 2 cut(s) 78, 189
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 80
NspI RCATGY 1 cut(s) 139
PaeR7I CTCGAG 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 2 cut(s) 223, 395
PflFI GACNNNGTC 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 2 cut(s) 164, 237
Psp124BI GAGCTC 1 cut(s) 196
PspEI GGTNACC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 2 cut(s) 75, 95
PsyI GACNNNGTC 1 cut(s) 93
PvuII CAGCTG 1 cut(s) 162
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
RseI CAYNNNNRTG 2 cut(s) 204, 292
SacI GAGCTC 1 cut(s) 196
SaqAI TTAA 2 cut(s) 423, 430
SatI GCNGC 2 cut(s) 163, 236
Sau96I GGNCC 2 cut(s) 75, 95
ScaI AGTACT 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 78, 189
SduI GDGCHC 1 cut(s) 196
SfaNI GCATC 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 271
SinI GGWCC 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 204, 292
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 3 cut(s) 15, 364, 384
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 170, 329
SstI GAGCTC 1 cut(s) 196
StyD4I CCNGG 2 cut(s) 76, 187
TaaI ACNGT 3 cut(s) 66, 103, 255
TaiI ACGT 1 cut(s) 204
TaqI TCGA 5 cut(s) 60, 179, 221, 272, 348
TasI AATT 3 cut(s) 15, 364, 384
TatI WGTACW 1 cut(s) 103
TfiI GAWTC 2 cut(s) 223, 395
Tru1I TTAA 2 cut(s) 423, 430
Tru9I TTAA 2 cut(s) 423, 430
TscAI CASTG 2 cut(s) 258, 418
TseFI GTSAC 1 cut(s) 80
TseI GCWGC 2 cut(s) 162, 235
Tsp45I GTSAC 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 334
TspRI CASTG 2 cut(s) 258, 418
Tth111I GACNNNGTC 1 cut(s) 93
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 1 cut(s) 15
XceI RCATGY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XhoI CTCGAG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 2 cut(s) 170, 329
ZrmI AGTACT 1 cut(s) 105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.