Rroxscaffold_7G00185870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006566
Physical Location & Seq
Forward (+)
25343858 .. 25348104
4247 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00185870.1

Sequence Viewer

Length: 1116 bp
ATGCTCTCCCTGGCGAAAAGACTGAAGACGTTGCATTGGTGCGTGGAGGCCGCCGGGAACCAGCTCCGGCGAGTGAGAACGGAAGCACGGTCGCCGAGGCGTCGGTCGAGGTCTCCGGCGCTGGCGATGAGGAAGGCGGAGGAGAAGTCGGAGTGGTGGATAGTCGACGGCGAAATGCACGAGATCGGCGACCACGTGCCGCCGCGTGAGCGGTTCGTGATTCCGAGAGATAACATCCCCAACAAGCGTCGGAAGCAGCTCAGGGAACAGTTCATGCGCCGCACTCGCCTCGTTCTCAAAGAAACGGAGCATGAGCCTTGGTGCAAAAAGTATATGGAGCTGTACCAGGAGCTTAGAGAGAATTGGGAAAGGCTTTACTGGGACGAAGGTTACTCCAAAAAGCTTGCCCAGGATCATGCGAATTACGAGTCGGCTGAAGATGATGATCAGGATTTCAATCCGTACCGGAGCAGGCAATCCCATTCCGAGCAATTTAAGGATATTCTGGGTGTGAGGTTAGAGTCTAAGGCTGCCAAGGTGGCTTGGGACGTGGTCTGCCTCCCGATAGAGGAAGGAGGGCTTGAGGCCACTTGGAGGAAACCCAAGAAATTCACTTTTTGGGAGTGGTGGGAAAGGTGGAGATTAGAAAGGATGGAGGGGAGGAAAGGGGCTAAGGTCCCCGGAAAGCTGCAAGCGTTGGTCTGGAGTATTGCTGGTGGTAGATTGATTACTTGGGATATGGTTCAGAAGTTCTTGGTTTTGTTGGGAGGCTATTGTGAGCGGGGATATTCACTATCATGTTATGTTCTACTGTGTAATATGGGTAAGATGCTGAGAACATCTCTGCTGTTATGGCAGCATTTTGGTGGGAAATTAAGGAGGGTTAGGGAGGCAGGATTGAGGAGGCAGGACCATGGATTTGGGGGTAGGCAAGGTGATACATGGGAAAAGGTTAACCAAATTAGGGATAAATTTGAGTATGACAGAGAAAGGAGGATGAAAGAAAAAGCATTTGCACCTATTCGTGGAGAAGTTTCTTCAAACGTCCATGATATGAACTCCAGAAGACAGCCATTTGACAGCCAGAGATACTTTTCCGACAGTGAAAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

44.5

Weight (kDa)

9.66

Isoelectric Point (pI)

58.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 211, 781
AccI GTMKAC 1 cut(s) 165
AccII CGCG 1 cut(s) 205
AciI CCGC 7 cut(s) 51, 137, 200, 203, 211, 280, 781
AclWI GGATC 1 cut(s) 420
AcsI RAATTY 2 cut(s) 608, 971
AcuI CTGAAG 2 cut(s) 44, 456
AcvI CACGTG 1 cut(s) 196
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 2 cut(s) 344, 464
AfiI CCNNNNNNNGG 4 cut(s) 568, 594, 964, 1025
AgsI TTSAA 2 cut(s) 457, 1041
AjiI CACGTC 1 cut(s) 550
AjnI CCWGG 3 cut(s) 9, 345, 408
AluBI AGCT 6 cut(s) 64, 259, 340, 352, 403, 688
AluI AGCT 6 cut(s) 64, 259, 340, 352, 403, 688
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 1 cut(s) 420
AoxI GGCC 2 cut(s) 48, 585
ApeKI GCWGC 4 cut(s) 256, 530, 688, 856
ApoI RAATTY 2 cut(s) 608, 971
ArsI GACNNNNNNTTYG 4 cut(s) 413, 445, 902, 934
AspLEI GCGC 2 cut(s) 121, 279
AspS9I GGNCC 2 cut(s) 676, 910
AsuC2I CCSGG 2 cut(s) 55, 681
AsuHPI GGTGA 1 cut(s) 947
AvaII GGWCC 2 cut(s) 676, 910
BauI CACGAG 1 cut(s) 179
BbrPI CACGTG 1 cut(s) 196
BbsI GAAGAC 2 cut(s) 32, 1072
BbvI GCAGC 4 cut(s) 268, 517, 675, 868
BccI CCATC 1 cut(s) 646
BceAI ACGGC 1 cut(s) 184
BcgI CGANNNNNNTGC 2 cut(s) 271, 305
BciT130I CCWGG 3 cut(s) 11, 347, 410
BclI TGATCA 1 cut(s) 445
BcnI CCSGG 2 cut(s) 55, 681
BcoDI GTCTC 1 cut(s) 117
BfoI RGCGCY 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 539
BisI GCNGC 8 cut(s) 51, 200, 203, 257, 280, 531, 689, 857
BlsI GCNGC 8 cut(s) 52, 201, 204, 258, 281, 532, 690, 858
Bme1390I CCNGG 5 cut(s) 11, 55, 347, 410, 681
Bme18I GGWCC 2 cut(s) 676, 910
BmgBI CACGTC 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 676, 910
BmiI GGNNCC 2 cut(s) 59, 678
BmrFI CCNGG 5 cut(s) 11, 55, 347, 410, 681
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 819
BmuI ACTGGG 1 cut(s) 388
BpiI GAAGAC 2 cut(s) 32, 1072
BplI GAGNNNNNCTC 2 cut(s) 826, 858
BpmI CTGGAG 2 cut(s) 724, 1045
Bpu10I CCTNAGC 2 cut(s) 260, 672
BpuEI CTTGAG 1 cut(s) 602
BpuMI CCSGG 2 cut(s) 55, 681
BsaAI YACGTR 1 cut(s) 196
BsaBI GATNNNNATC 2 cut(s) 444, 456
BsaHI GRCGYC 1 cut(s) 100
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 7 cut(s) 9, 95, 317, 408, 534, 679, 913
BsaWI WCCGGW 1 cut(s) 465
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 4 cut(s) 568, 594, 964, 1025
Bse1I ACTGG 1 cut(s) 383
Bse8I GATNNNNATC 2 cut(s) 444, 456
BseBI CCWGG 3 cut(s) 11, 347, 410
BseDI CCNNGG 7 cut(s) 9, 95, 317, 408, 534, 679, 913
BseGI GGATG 3 cut(s) 234, 657, 1002
BseJI GATNNNNATC 2 cut(s) 444, 456
BseLI CCNNNNNNNGG 4 cut(s) 568, 594, 964, 1025
BseMII CTCAG 2 cut(s) 274, 824
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 2 cut(s) 155, 916
BseXI GCAGC 4 cut(s) 268, 517, 675, 868
Bsh1236I CGCG 1 cut(s) 205
Bsh1285I CGRYCG 2 cut(s) 92, 107
BshFI GGCC 2 cut(s) 50, 587
BsiEI CGRYCG 2 cut(s) 92, 107
BsiSI CCGG 5 cut(s) 54, 67, 116, 466, 681
BslFI GGGAC 3 cut(s) 395, 560, 662
BslI CCNNNNNNNGG 4 cut(s) 568, 594, 964, 1025
BsmAI GTCTC 1 cut(s) 117
BsmFI GGGAC 3 cut(s) 395, 560, 662
BsnI GGCC 2 cut(s) 50, 587
Bso31I GGTCTC 1 cut(s) 117
Bsp143I GATC 3 cut(s) 183, 412, 445
Bsp19I CCATGG 1 cut(s) 913
BspACI CCGC 7 cut(s) 51, 137, 200, 203, 211, 280, 781
BspANI GGCC 2 cut(s) 50, 587
BspCNI CTCAG 2 cut(s) 273, 825
BspFNI CGCG 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 59, 678
BspPI GGATC 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 2 cut(s) 211, 781
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 7 cut(s) 9, 95, 317, 408, 534, 679, 913
BssMI GATC 3 cut(s) 183, 412, 445
BssNI GRCGYC 1 cut(s) 100
BssSI CACGAG 1 cut(s) 179
BssT1I CCWWGG 3 cut(s) 317, 534, 913
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 3 cut(s) 11, 347, 410
Bst4CI ACNGT 4 cut(s) 90, 270, 813, 1103
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 196
BstC8I GCNNGC 4 cut(s) 123, 405, 473, 693
BstDEI CTNAG 5 cut(s) 260, 353, 525, 672, 833
BstDSI CCRYGG 1 cut(s) 913
BstF5I GGATG 3 cut(s) 234, 657, 1002
BstFNI CGCG 1 cut(s) 205
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 121, 279
BstKTI GATC 3 cut(s) 186, 415, 448
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 183, 412, 445
BstMCI CGRYCG 2 cut(s) 92, 107
BstMWI GCNNNNNNNGC 5 cut(s) 208, 253, 285, 539, 853
BstNI CCWGG 3 cut(s) 11, 347, 410
BstSCI CCNGG 5 cut(s) 9, 53, 345, 408, 679
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 268, 517, 675, 868
BstV2I GAAGAC 2 cut(s) 32, 1072
BstXI CCANNNNNNTGG 1 cut(s) 920
BsuRI GGCC 2 cut(s) 50, 587
BtgI CCRYGG 1 cut(s) 913
BtgZI GCGATG 1 cut(s) 140
BtrI CACGTC 1 cut(s) 550
BtsCI GGATG 3 cut(s) 234, 657, 1002
BtsIMutI CAGTG 1 cut(s) 1108
Cac8I GCNNGC 4 cut(s) 123, 405, 473, 693
CfoI GCGC 2 cut(s) 121, 279
Cfr13I GGNCC 2 cut(s) 676, 910
CseI GACGC 2 cut(s) 89, 236
Csp6I GTAC 2 cut(s) 343, 463
CviAII CATG 7 cut(s) 274, 311, 416, 798, 914, 942, 1049
CviQI GTAC 2 cut(s) 343, 463
DdeI CTNAG 5 cut(s) 260, 353, 525, 672, 833
DpnI GATC 3 cut(s) 185, 414, 447
DpnII GATC 3 cut(s) 183, 412, 445
EciI GGCGGA 1 cut(s) 152
Eco130I CCWWGG 3 cut(s) 317, 534, 913
Eco31I GGTCTC 1 cut(s) 117
Eco47I GGWCC 2 cut(s) 676, 910
Eco57I CTGAAG 2 cut(s) 44, 456
Eco72I CACGTG 1 cut(s) 196
EcoO109I RGGNCCY 1 cut(s) 676
EcoRII CCWGG 3 cut(s) 9, 345, 408
EcoT14I CCWWGG 3 cut(s) 317, 534, 913
ErhI CCWWGG 3 cut(s) 317, 534, 913
FaeI CATG 7 cut(s) 277, 314, 419, 801, 917, 945, 1052
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FaqI GGGAC 3 cut(s) 395, 560, 662
FatI CATG 7 cut(s) 273, 310, 415, 797, 913, 941, 1048
FauI CCCGC 1 cut(s) 774
FbaI TGATCA 1 cut(s) 445
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 8 cut(s) 51, 200, 203, 257, 280, 531, 689, 857
FokI GGATG 3 cut(s) 221, 664, 1009
Fsp4HI GCNGC 8 cut(s) 51, 200, 203, 257, 280, 531, 689, 857
GlaI GCGC 2 cut(s) 120, 278
GluI GCNGC 8 cut(s) 51, 200, 203, 257, 280, 531, 689, 857
GsuI CTGGAG 2 cut(s) 724, 1045
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 50, 587
HapII CCGG 5 cut(s) 54, 67, 116, 466, 681
HgaI GACGC 2 cut(s) 89, 236
HhaI GCGC 2 cut(s) 121, 279
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 7 cut(s) 277, 314, 419, 801, 917, 945, 1052
Hin6I GCGC 2 cut(s) 119, 277
HinP1I GCGC 2 cut(s) 119, 277
HincII GTYRAC 2 cut(s) 166, 955
HindII GTYRAC 2 cut(s) 166, 955
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 3 cut(s) 220, 428, 521
HpaI GTTAAC 1 cut(s) 955
HpaII CCGG 5 cut(s) 54, 67, 116, 466, 681
HphI GGTGA 1 cut(s) 947
Hpy166II GTNNAC 2 cut(s) 166, 955
Hpy188I TCNGA 6 cut(s) 151, 225, 252, 487, 747, 1099
Hpy188III TCNNGA 5 cut(s) 217, 449, 562, 703, 1062
Hpy8I GTNNAC 2 cut(s) 166, 955
Hpy99I CGWCG 3 cut(s) 105, 170, 252
HpyAV CCTTC 3 cut(s) 127, 380, 566
HpyCH4III ACNGT 4 cut(s) 90, 270, 813, 1103
HpyCH4IV ACGT 4 cut(s) 29, 195, 549, 1044
HpyCH4V TGCA 5 cut(s) 34, 178, 324, 691, 1016
HpyF10VI GCNNNNNNNGC 5 cut(s) 208, 253, 285, 539, 853
HpyF3I CTNAG 5 cut(s) 260, 353, 525, 672, 833
HpySE526I ACGT 4 cut(s) 29, 195, 549, 1044
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 7 cut(s) 277, 314, 419, 801, 917, 945, 1052
HspAI GCGC 2 cut(s) 119, 277
Ksp22I TGATCA 1 cut(s) 445
KspAI GTTAAC 1 cut(s) 955
Kzo9I GATC 3 cut(s) 183, 412, 445
LmnI GCTCC 5 cut(s) 69, 307, 337, 349, 468
Lsp1109I GCAGC 4 cut(s) 268, 517, 675, 868
LweI GCATC 1 cut(s) 819
MaeII ACGT 4 cut(s) 29, 195, 549, 1044
MaeIII GTNAC 1 cut(s) 389
MalI GATC 3 cut(s) 185, 414, 447
MbiI CCGCTC 2 cut(s) 211, 781
MboI GATC 3 cut(s) 183, 412, 445
MboII GAAGA 4 cut(s) 37, 449, 1029, 1077
MluCI AATT 7 cut(s) 361, 421, 491, 608, 872, 960, 971
MlyI GAGTC 2 cut(s) 437, 530
MmeI TCCRAC 2 cut(s) 129, 230
MseI TTAA 3 cut(s) 495, 875, 954
MslI CAYNNNNRTG 2 cut(s) 796, 864
MspI CCGG 5 cut(s) 54, 67, 116, 466, 681
MspR9I CCNGG 5 cut(s) 11, 55, 347, 410, 681
MvaI CCWGG 3 cut(s) 11, 347, 410
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 5 cut(s) 208, 253, 285, 539, 853
NciI CCSGG 2 cut(s) 55, 681
NcoI CCATGG 1 cut(s) 913
NdeII GATC 3 cut(s) 183, 412, 445
NlaIII CATG 7 cut(s) 277, 314, 419, 801, 917, 945, 1052
NlaIV GGNNCC 2 cut(s) 59, 678
NmeAIII GCCGAG 1 cut(s) 120
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 192
PfeI GAWTC 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 551
PkrI GCNGC 8 cut(s) 52, 201, 204, 258, 281, 532, 690, 858
PleI GAGTC 2 cut(s) 436, 529
PmaCI CACGTG 1 cut(s) 196
PmlI CACGTG 1 cut(s) 196
PpsI GAGTC 2 cut(s) 436, 529
Ppu21I YACGTR 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 676
Psp6I CCWGG 3 cut(s) 9, 345, 408
PspCI CACGTG 1 cut(s) 196
PspGI CCWGG 3 cut(s) 9, 345, 408
PspN4I GGNNCC 2 cut(s) 59, 678
PspPI GGNCC 2 cut(s) 676, 910
PspPPI RGGWCCY 1 cut(s) 676
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 2 cut(s) 344, 464
RsaNI GTAC 2 cut(s) 343, 463
RseI CAYNNNNRTG 2 cut(s) 796, 864
SalI GTCGAC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 495, 875, 954
SatI GCNGC 8 cut(s) 51, 200, 203, 257, 280, 531, 689, 857
Sau3AI GATC 3 cut(s) 183, 412, 445
Sau96I GGNCC 2 cut(s) 676, 910
SchI GAGTC 2 cut(s) 437, 530
ScrFI CCNGG 5 cut(s) 11, 55, 347, 410, 681
SfaNI GCATC 1 cut(s) 819
SinI GGWCC 2 cut(s) 676, 910
SmiMI CAYNNNNRTG 2 cut(s) 796, 864
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 7 cut(s) 361, 421, 491, 608, 872, 960, 971
SsiI CCGC 7 cut(s) 51, 137, 200, 203, 211, 280, 781
StyD4I CCNGG 5 cut(s) 9, 53, 345, 408, 679
StyI CCWWGG 3 cut(s) 317, 534, 913
TaaI ACNGT 4 cut(s) 90, 270, 813, 1103
TaiI ACGT 4 cut(s) 32, 198, 552, 1047
TaqI TCGA 2 cut(s) 107, 165
TaqII GACCGA 1 cut(s) 93
TasI AATT 7 cut(s) 361, 421, 491, 608, 872, 960, 971
TauI GCSGC 4 cut(s) 53, 202, 205, 282
TfiI GAWTC 1 cut(s) 220
Tru1I TTAA 3 cut(s) 495, 875, 954
Tru9I TTAA 3 cut(s) 495, 875, 954
TscAI CASTG 1 cut(s) 1108
TseI GCWGC 4 cut(s) 256, 530, 688, 856
TspDTI ATGAA 3 cut(s) 262, 1013, 1070
TspGWI ACGGA 3 cut(s) 95, 320, 450
TspRI CASTG 1 cut(s) 1108
Tth111I GACNNNGTC 1 cut(s) 551
VpaK11BI GGWCC 2 cut(s) 676, 910
XapI RAATTY 2 cut(s) 608, 971
XmiI GTMKAC 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.