AT3G07620

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012729
Physical Location & Seq
Reverse (-)
2433222 .. 2435015
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G07620.1

Sequence Viewer

Length: 1380 bp
ATGAGAGATTACATTCCGAAATACCTGAACGCCTTTCTTTTGGCATTTGCCACTTTTGCTGTAGGCTTTGCCATTTTCATAGCAAAAGATTCAAATTCATCTTCTCATCTTTATTTTTCAACATCTTCTTCACTATGGACCTCTTCCTTCTCACCCGCCTTCATCACGGAAAAAAGAAAGAGAAACGGATCAAATCCAGGTTCTGGATATTGGAAAAGGGATGGGAAAGTAGAAGCAGAATTAGCAACCGCGAGGGTGTTGATCAGAGAAGCTCAATTAAATTATAGTTCTACTACATCGTCTCCCCTTGGAGACGAAGACTATGTTCCTCATGGCGACATTTACCGGAACCCTTATGCCTTTCACCGAAGTTATCTTCTTATGGAGAAGATGTTCAAGATATACGTATACGAAGAAGGAGATCCGCCAATATTTCACTATGGACTTTGTAAAGACATATACTCCATGGAAGGATTATTCCTAAACTTTATGGAAAACGATGTCCTTAAGTACCGAACCCGAGATCCGGACAAGGCTCATGTCTACTTCTTACCTTTTAGTGTTGTGATGATCCTACACCATCTTTTCGACCCAGTTGTTCGAGATAAGGCTGTCTTGGAACGTGTCATCGCCGACTATGTCCAAATAATTTCCAAGAAATATCCTTATTGGAACACAAGCGATGGGTTTGATCACTTCATGTTGTCTTGCCATGACTGGGGTCACAGGGCAACATGGTACGTAAAGAAACTATTTTTCAATTCCATAAGAGTACTATGCAACGCCAACATATCAGAATATTTTAATCCAGAGAAAGACGCTCCGTTTCCCGAAATTAATTTACTGACCGGAGACATCAACAACTTAACCGGTGGTTTAGATCCAATCTCTCGTACAACACTTGCTTTCTTCGCTGGAAAATCACACGGCAAAATCCGTCCGGTTCTTCTTAACCACTGGAAAGAAAAGGATAAAGATATTCTGGTTTACGAGAATCTACCGGACGGTTTAGATTACACGGAGATGATGAGGAAAAGCCGGTTTTGTATTTGCCCGAGTGGTCACGAAGTTGCCAGTCCGAGAGTACCGGAAGCTATATACAGCGGATGTGTACCGGTTCTTATTTCGGAGAACTATGTTTTGCCGTTTAGTGATGTTTTGAACTGGGAGAAGTTCTCGGTTTCGGTATCGGTTAAGGAAATACCGGAACTAAAAAGGATACTGATGGATATACCGGAAGAGCGGTATATGAGATTATACGAGGGAGTGAAGAAAGTGAAGAGGCATATTTTGGTTAATGATCCTCCAAAGAGATACGATGTGTTTAATATGATTATACATTCCATTTGGTTAAGAAGATTAAATGTTAAATTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

459

Amino Acids

53.33

Weight (kDa)

8.3

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 129 - 409 1e-60 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 1243
AccI GTMKAC 2 cut(s) 408, 543
AccII CGCG 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 5 cut(s) 156, 249, 425, 1104, 1243
AclWI GGATC 6 cut(s) 196, 416, 518, 565, 875, 1295
AcsI RAATTY 1 cut(s) 94
AfaI GTAC 6 cut(s) 512, 740, 774, 895, 1086, 1113
AfiI CCNNNNNNNGG 3 cut(s) 203, 526, 718
AflII CTTAAG 1 cut(s) 506
AflIII ACRYGT 1 cut(s) 622
AgeI ACCGGT 2 cut(s) 869, 1114
AgsI TTSAA 5 cut(s) 93, 120, 397, 760, 1162
AjnI CCWGG 1 cut(s) 196
AloI GAACNNNNNNTCC 4 cut(s) 377, 409, 508, 540
AluBI AGCT 2 cut(s) 272, 1094
AluI AGCT 2 cut(s) 272, 1094
Alw26I GTCTC 3 cut(s) 306, 306, 846
AlwI GGATC 6 cut(s) 196, 416, 518, 565, 875, 1295
AlwNI CAGNNNCTG 1 cut(s) 203
Ama87I CYCGRG 2 cut(s) 519, 1054
Aor13HI TCCGGA 1 cut(s) 526
ApoI RAATTY 1 cut(s) 94
AseI ATTAAT 1 cut(s) 837
AsiGI ACCGGT 2 cut(s) 869, 1114
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 2 cut(s) 144, 356
AvaI CYCGRG 2 cut(s) 519, 1054
AvaII GGWCC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 324
BccI CCATC 4 cut(s) 215, 588, 677, 1219
BceAI ACGGC 2 cut(s) 943, 1129
BciT130I CCWGG 1 cut(s) 198
BciVI GTATCC 1 cut(s) 1212
BclI TGATCA 2 cut(s) 261, 691
BcoDI GTCTC 3 cut(s) 306, 306, 846
BfmI CTRYAG 1 cut(s) 60
BfrI CTTAAG 1 cut(s) 506
BfuI GTATCC 1 cut(s) 1212
BmcAI AGTACT 1 cut(s) 774
Bme1390I CCNGG 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 138
BmeT110I CYCGRG 2 cut(s) 519, 1054
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 198
BmrI ACTGGG 3 cut(s) 587, 727, 1174
BmuI ACTGGG 3 cut(s) 587, 727, 1174
BoxI GACNNNNGTC 1 cut(s) 720
BpiI GAAGAC 1 cut(s) 324
BplI GAGNNNNNCTC 2 cut(s) 1160, 1192
BsaAI YACGTR 2 cut(s) 406, 742
BsaJI CCNNGG 2 cut(s) 307, 465
BsaXI ACNNNNNCTCC 6 cut(s) 286, 316, 377, 407, 446, 476
Bsc4I CCNNNNNNNGG 3 cut(s) 203, 526, 718
Bse118I RCCGGY 3 cut(s) 869, 1038, 1114
Bse1I ACTGG 5 cut(s) 593, 722, 962, 1074, 1169
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 2 cut(s) 307, 465
BseGI GGATG 2 cut(s) 226, 1112
BseLI CCNNNNNNNGG 3 cut(s) 203, 526, 718
BseNI ACTGG 5 cut(s) 593, 722, 962, 1074, 1169
Bsh1236I CGCG 1 cut(s) 251
BshTI ACCGGT 2 cut(s) 869, 1114
BsiHKCI CYCGRG 2 cut(s) 519, 1054
BslI CCNNNNNNNGG 3 cut(s) 203, 526, 718
BsmAI GTCTC 3 cut(s) 306, 306, 846
BsmBI CGTCTC 2 cut(s) 306, 306
BsoBI CYCGRG 2 cut(s) 519, 1054
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 5 cut(s) 156, 249, 425, 1104, 1243
BspEI TCCGGA 1 cut(s) 526
BspFNI CGCG 1 cut(s) 251
BspLI GGNNCC 1 cut(s) 350
BspPI GGATC 6 cut(s) 196, 416, 518, 565, 875, 1295
BspQI GCTCTTC 1 cut(s) 1233
BspTI CTTAAG 1 cut(s) 506
BsrBI CCGCTC 1 cut(s) 1243
BsrFI RCCGGY 3 cut(s) 869, 1038, 1114
BsrI ACTGG 5 cut(s) 593, 722, 962, 1074, 1169
BssAI RCCGGY 3 cut(s) 869, 1038, 1114
BssECI CCNNGG 2 cut(s) 307, 465
BssMI GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
BssNAI GTATAC 1 cut(s) 409
BssT1I CCWWGG 2 cut(s) 307, 465
Bst1107I GTATAC 1 cut(s) 409
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 1007
Bst6I CTCTTC 3 cut(s) 148, 1233, 1274
BstAFI CTTAAG 1 cut(s) 506
BstBAI YACGTR 2 cut(s) 406, 742
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 2 cut(s) 226, 1112
BstFNI CGCG 1 cut(s) 251
BstKTI GATC 8 cut(s) 191, 264, 424, 526, 573, 694, 883, 1303
BstMAI GTCTC 3 cut(s) 306, 306, 846
BstMBI GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
BstMWI GCNNNNNNNGC 3 cut(s) 56, 242, 911
BstNI CCWGG 1 cut(s) 198
BstPAI GACNNNNGTC 1 cut(s) 720
BstSCI CCNGG 1 cut(s) 196
BstSFI CTRYAG 1 cut(s) 60
BstSNI TACGTA 2 cut(s) 406, 742
BstUI CGCG 1 cut(s) 251
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 3 cut(s) 421, 523, 880
BstYI RGATCY 3 cut(s) 421, 523, 880
BstZ17I GTATAC 1 cut(s) 409
BsuI GTATCC 1 cut(s) 1212
BtgI CCRYGG 1 cut(s) 465
BtgZI GCGATG 2 cut(s) 613, 696
BtsCI GGATG 2 cut(s) 226, 1112
BtsIMutI CAGTG 1 cut(s) 955
CaiI CAGNNNCTG 1 cut(s) 203
Cfr10I RCCGGY 3 cut(s) 869, 1038, 1114
Cfr13I GGNCC 1 cut(s) 138
CseI GACGC 1 cut(s) 827
Csp6I GTAC 6 cut(s) 511, 739, 773, 894, 1085, 1112
CspAI ACCGGT 2 cut(s) 869, 1114
CviAII CATG 6 cut(s) 332, 466, 539, 700, 713, 735
CviJI RGCY 6 cut(s) 66, 272, 536, 611, 1038, 1094
CviKI_1 RGCY 6 cut(s) 66, 272, 536, 611, 1038, 1094
CviQI GTAC 6 cut(s) 511, 739, 773, 894, 1085, 1112
DpnI GATC 8 cut(s) 190, 263, 423, 525, 572, 693, 882, 1302
DpnII GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
Eam1104I CTCTTC 3 cut(s) 148, 1233, 1274
EarI CTCTTC 3 cut(s) 148, 1233, 1274
EciI GGCGGA 1 cut(s) 414
Eco105I TACGTA 2 cut(s) 406, 742
Eco130I CCWWGG 2 cut(s) 307, 465
Eco47I GGWCC 1 cut(s) 138
Eco88I CYCGRG 2 cut(s) 519, 1054
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 307, 465
ErhI CCWWGG 2 cut(s) 307, 465
Esp3I CGTCTC 2 cut(s) 306, 306
FaeI CATG 6 cut(s) 335, 469, 542, 703, 716, 738
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FatI CATG 6 cut(s) 331, 465, 538, 699, 712, 734
FauI CCCGC 1 cut(s) 163
FbaI TGATCA 2 cut(s) 261, 691
FblI GTMKAC 2 cut(s) 408, 543
FokI GGATG 2 cut(s) 233, 1119
HgaI GACGC 1 cut(s) 827
Hin1II CATG 6 cut(s) 335, 469, 542, 703, 716, 738
HinfI GANTC 2 cut(s) 89, 994
HphI GGTGA 2 cut(s) 144, 356
Hpy166II GTNNAC 4 cut(s) 409, 544, 988, 1112
Hpy188I TCNGA 5 cut(s) 18, 266, 796, 1080, 1129
Hpy188III TCNNGA 7 cut(s) 204, 397, 527, 602, 809, 830, 1064
Hpy8I GTNNAC 4 cut(s) 409, 544, 988, 1112
HpyAV CCTTC 4 cut(s) 157, 169, 410, 464
HpyCH4III ACNGT 1 cut(s) 1007
HpyCH4IV ACGT 3 cut(s) 405, 622, 741
HpyCH4V TGCA 1 cut(s) 780
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 242, 911
HpySE526I ACGT 3 cut(s) 405, 622, 741
Hsp92II CATG 6 cut(s) 335, 469, 542, 703, 716, 738
Kpn2I TCCGGA 1 cut(s) 526
Ksp22I TGATCA 2 cut(s) 261, 691
Kzo9I GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
LguI GCTCTTC 1 cut(s) 1233
LmnI GCTCC 1 cut(s) 826
MaeII ACGT 3 cut(s) 405, 622, 741
MaeIII GTNAC 2 cut(s) 722, 1061
MalI GATC 8 cut(s) 190, 263, 423, 525, 572, 693, 882, 1302
MbiI CCGCTC 1 cut(s) 1243
MboI GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
MflI RGATCY 3 cut(s) 421, 523, 880
MluCI AATT 9 cut(s) 94, 239, 275, 280, 648, 760, 834, 838, 1370
MnlI CCTC 7 cut(s) 151, 246, 339, 1023, 1255, 1275, 1314
MroI TCCGGA 1 cut(s) 526
MroXI GAANNNNTTC 1 cut(s) 392
MslI CAYNNNNRTG 1 cut(s) 1022
MspA1I CMGCKG 1 cut(s) 1104
MspCI CTTAAG 1 cut(s) 506
MspR9I CCNGG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 198
MvnI CGCG 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 56, 242, 911
NcoI CCATGG 1 cut(s) 465
NdeII GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
NlaIII CATG 6 cut(s) 335, 469, 542, 703, 716, 738
NlaIV GGNNCC 1 cut(s) 350
NmuCI GTSAC 2 cut(s) 722, 1061
PciSI GCTCTTC 1 cut(s) 1233
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 2 cut(s) 89, 994
PflFI GACNNNGTC 1 cut(s) 638
PflMI CCANNNNNTGG 1 cut(s) 203
PinAI ACCGGT 2 cut(s) 869, 1114
Ppu21I YACGTR 2 cut(s) 406, 742
PshAI GACNNNNGTC 1 cut(s) 720
PshBI ATTAAT 1 cut(s) 837
Psp6I CCWGG 1 cut(s) 196
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 1 cut(s) 350
PspPI GGNCC 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 203
PsuI RGATCY 3 cut(s) 421, 523, 880
PsyI GACNNNGTC 1 cut(s) 638
RsaI GTAC 6 cut(s) 512, 740, 774, 895, 1086, 1113
RsaNI GTAC 6 cut(s) 511, 739, 773, 894, 1085, 1112
RseI CAYNNNNRTG 1 cut(s) 1022
SapI GCTCTTC 1 cut(s) 1233
Sau3AI GATC 8 cut(s) 188, 261, 421, 523, 570, 691, 880, 1300
Sau96I GGNCC 1 cut(s) 138
ScaI AGTACT 1 cut(s) 774
ScrFI CCNGG 1 cut(s) 198
SetI ASST 9 cut(s) 27, 143, 202, 274, 408, 556, 625, 744, 1096
SfcI CTRYAG 1 cut(s) 60
SinI GGWCC 1 cut(s) 138
SmiMI CAYNNNNRTG 1 cut(s) 1022
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
SnaBI TACGTA 2 cut(s) 406, 742
Sse9I AATT 9 cut(s) 94, 239, 275, 280, 648, 760, 834, 838, 1370
SsiI CCGC 5 cut(s) 156, 249, 425, 1104, 1243
SspI AATATT 2 cut(s) 432, 800
StyD4I CCNGG 1 cut(s) 196
StyI CCWWGG 2 cut(s) 307, 465
TaaI ACNGT 1 cut(s) 1007
TaiI ACGT 3 cut(s) 408, 625, 744
TaqI TCGA 2 cut(s) 588, 601
TasI AATT 9 cut(s) 94, 239, 275, 280, 648, 760, 834, 838, 1370
TatI WGTACW 1 cut(s) 772
TfiI GAWTC 2 cut(s) 89, 994
TscAI CASTG 1 cut(s) 962
TseFI GTSAC 2 cut(s) 722, 1061
Tsp45I GTSAC 2 cut(s) 722, 1061
TspDTI ATGAA 4 cut(s) 67, 87, 151, 688
TspGWI ACGGA 5 cut(s) 182, 201, 813, 926, 1034
TspRI CASTG 1 cut(s) 962
Tth111I GACNNNGTC 1 cut(s) 638
Van91I CCANNNNNTGG 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 138
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 1 cut(s) 94
XmiI GTMKAC 2 cut(s) 408, 543
XmnI GAANNNNTTC 1 cut(s) 392
ZrmI AGTACT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.