Rw2G042170

Glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0012729
Physical Location & Seq
Forward (+)
68413578 .. 68416231
2654 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G042170.1

Sequence Viewer

Length: 1389 bp
ATGTGTGCAGAACTGAGAAGGTTGTCTTCTCAGCCAATCCAAGAGCTATTCGCCTCTTCTGGACAGCTCCCACTTCGAATGGTGTACAGGTCTCAAAACTACTCCAATAGGAAAGAGATGGCAAAGCAGGCTTATAGAAGATCATACCAAAATGTCTTTGTACTGTTTGCAATGGCTTTCTTTGCTATAGTCTCAGTGGTTGTTATGCCAAAGGCCCATAGAGGAATATCTACTTGGTTGGGTTTAACTAGTACCATAGGTATGAGTTCTGATTCTCAGTTCAGATTCAACAATATTTCTGGACACGGGAGTTTCACAGGCAAGTCTGTTTCTAAACGAGATAATGATAAAAGAGATGTAAACCTGGAGAGGCTTGAGGCCGGTCTTGCTACTGCTAGAGAGTTGATAAGGGAAGCAACAAAGCTAAACCAAACAAGTACACTTGAAGATGCCGATTATGTTCCACACGGCGATATTTACAGGAACGCCTATGCCTTTCACCGGAGCTACCTCTTAATGGAAAGACTTTTTAAGAGTTTTGTCTATGAAGAGGGAGAGCCTCCAATATTCCACAATGGTCCTTGCAAGAACATATACTCTATGGAAGGACTCTTTCTCAGCTTCATGGGAATTGATACCAAATTCCGAACTTTGGATCCAGAAAAAGCTCATGTCTATTTCCTTCCTTTTAGTGTGGTGATGATCATTGAGTACCTCTTTCATCCAATTATTCGAGACAAAGCTGTTTTACAACGCACCGTGGTTGATTATGTTCGAGTCATATCCAACAAGTACCCATTTTGGAATAGAAGCCTTGGGGCTGATCATGTAGTGCTTTCTTGCCATGATTGGGTAAGTGAAATTACAGGTTTAATTGGAGGCTTCCCCCCCTCCAAACGTTCTATCCCAGCCTTCTTTGCAGGACAAATGCATGGACGAATCAGACCATTGCTTTTCCAACACTGGAAAGAAAAAGATAAAGATCTACTGGTTTATGAAACACTCCCCAAGAAATTTTCGTACCATGACATGTTGAAGAAAAGCAAGTATTGCATTTGCCCAAGCGGTCATGAAGTCGCTAGTCCAAGGATCGTAGAGGCAATTTATGCAGAGTGTGTTCCAGTTTTGATTTCACAGCATTATGTTCTGCCTTTCAGTGATGTTCTAGATTGGGAGTCCTTTTCTATTCAAGTATCTGTGAGTGAAATACCACAACTTAAGGAAATCTTAATGGGGATTCCTGAAGAGAAGTATAGAAGAATGCAGGAAAGAGTGAAACAAGTGCAAAGGCATTTTGTGGTGAACAATCCCCCCAACAGATTTGATGTTTTTCATATGATAATTCATTCAATATGGCTTAGGAGACTCAATGTACGTATTTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

462

Amino Acids

53.69

Weight (kDa)

9.32

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 177 - 284 3.7e-12 Exostosin GT47 domain
Exostosin_GT47 PF03016 295 - 411 9.5e-32 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012729)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07620
fragaria_vesca FvH4_6g40270 FvH4_6g40270
malus_domestica MD17G1120500.v1.1
prunus_persica Prupe.3G193400_v2.0.a1
pyrus_communis pycom17g11120
rosa_chinensis RchiOBHm_Chr2g0155401
rosa_laevigata RLG00000020836
rosa_multiflora Rmu_sc0012066.1_g000012
rosa_roxburghii Rroxscaffold_2G00093770
rosa_rugosa Rorug02G0446800 Rorug02G0446900 Rorug02G0447000
rosa_samantha Rh2AG513200 Rh2BG523800 Rh2CG498200 Rh2DG533500
rosa_wichuraiana Rw2G042170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1065
AclI AACGTT 1 cut(s) 898
AclWI GGATC 3 cut(s) 650, 663, 1097
AcsI RAATTY 2 cut(s) 641, 1013
AcuI CTGAAG 1 cut(s) 1263
AfaI GTAC 8 cut(s) 86, 162, 253, 439, 713, 794, 1022, 1374
AfiI CCNNNNNNNGG 4 cut(s) 501, 517, 652, 850
AflII CTTAAG 1 cut(s) 1217
AflIII ACRYGT 1 cut(s) 1029
AgsI TTSAA 5 cut(s) 289, 446, 1036, 1190, 1350
AhlI ACTAGT 1 cut(s) 248
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 217, 249
AloI GAACNNNNNNTCC 2 cut(s) 640, 672
AluBI AGCT 7 cut(s) 46, 67, 424, 507, 621, 668, 743
AluI AGCT 7 cut(s) 46, 67, 424, 507, 621, 668, 743
Alw26I GTCTC 4 cut(s) 96, 196, 729, 1357
AlwI GGATC 3 cut(s) 650, 663, 1097
AoxI GGCC 2 cut(s) 213, 378
ApoI RAATTY 2 cut(s) 641, 1013
AspS9I GGNCC 2 cut(s) 214, 578
AsuHPI GGTGA 3 cut(s) 491, 709, 1312
AsuII TTCGAA 1 cut(s) 76
AvaII GGWCC 1 cut(s) 578
BamHI GGATCC 1 cut(s) 655
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 1 cut(s) 112
BceAI ACGGC 1 cut(s) 484
BciT130I CCWGG 1 cut(s) 365
BclI TGATCA 2 cut(s) 702, 823
BcoDI GTCTC 4 cut(s) 96, 196, 729, 1357
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 4 cut(s) 249, 396, 1080, 1166
BfmI CTRYAG 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 1217
BglII AGATCT 1 cut(s) 982
Bme1390I CCNGG 1 cut(s) 365
Bme18I GGWCC 1 cut(s) 578
BmgT120I GGNCC 2 cut(s) 214, 578
BmiI GGNNCC 1 cut(s) 657
BmrFI CCNGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 18
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 1358
Bpu14I TTCGAA 1 cut(s) 76
BpuEI CTTGAG 1 cut(s) 395
BsaAI YACGTR 1 cut(s) 1376
BsaBI GATNNNNATC 1 cut(s) 981
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 3 cut(s) 759, 814, 1085
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 4 cut(s) 501, 517, 652, 850
Bse118I RCCGGY 1 cut(s) 380
Bse1I ACTGG 3 cut(s) 968, 993, 1121
Bse3DI GCAATG 2 cut(s) 177, 947
Bse8I GATNNNNATC 1 cut(s) 981
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 3 cut(s) 759, 814, 1085
BseGI GGATG 1 cut(s) 721
BseJI GATNNNNATC 1 cut(s) 981
BseLI CCNNNNNNNGG 4 cut(s) 501, 517, 652, 850
BseMI GCAATG 2 cut(s) 177, 947
BseMII CTCAG 5 cut(s) 5, 44, 207, 290, 631
BseNI ACTGG 3 cut(s) 968, 993, 1121
BseYI CCCAGC 1 cut(s) 907
BsgI GTGCAG 1 cut(s) 27
BshFI GGCC 2 cut(s) 215, 380
BsiSI CCGG 2 cut(s) 381, 502
BslI CCNNNNNNNGG 4 cut(s) 501, 517, 652, 850
BsmAI GTCTC 4 cut(s) 96, 196, 729, 1357
BsmI GAATGC 1 cut(s) 1266
BsnI GGCC 2 cut(s) 215, 380
Bso31I GGTCTC 1 cut(s) 96
Bsp119I TTCGAA 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
BspACI CCGC 1 cut(s) 1065
BspANI GGCC 2 cut(s) 215, 380
BspCNI CTCAG 5 cut(s) 6, 43, 206, 289, 630
BspHI TCATGA 1 cut(s) 1069
BspLI GGNNCC 1 cut(s) 657
BspPI GGATC 3 cut(s) 650, 663, 1097
BspT104I TTCGAA 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 1217
BspTNI GGTCTC 1 cut(s) 96
BsrDI GCAATG 2 cut(s) 177, 947
BsrFI RCCGGY 1 cut(s) 380
BsrGI TGTACA 1 cut(s) 84
BsrI ACTGG 3 cut(s) 968, 993, 1121
BssAI RCCGGY 1 cut(s) 380
BssECI CCNNGG 3 cut(s) 759, 814, 1085
BssMI GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
BssT1I CCWWGG 2 cut(s) 814, 1085
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 165, 760
Bst6I CTCTTC 3 cut(s) 61, 543, 1239
BstAFI CTTAAG 1 cut(s) 1217
BstAPI GCANNNNNTGC 2 cut(s) 1050, 1106
BstAUI TGTACA 1 cut(s) 84
BstBAI YACGTR 1 cut(s) 1376
BstBI TTCGAA 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 6 cut(s) 14, 30, 193, 276, 617, 1358
BstDSI CCRYGG 1 cut(s) 759
BstF5I GGATG 1 cut(s) 721
BstKTI GATC 6 cut(s) 143, 658, 705, 826, 985, 1092
BstMAI GTCTC 4 cut(s) 96, 196, 729, 1357
BstMBI GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
BstMWI GCNNNNNNNGC 6 cut(s) 128, 182, 386, 917, 1050, 1106
BstNI CCWGG 1 cut(s) 365
BstNSI RCATGY 1 cut(s) 1033
BstSCI CCNGG 1 cut(s) 363
BstSFI CTRYAG 1 cut(s) 186
BstSNI TACGTA 1 cut(s) 1376
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 655, 982
BstYI RGATCY 2 cut(s) 655, 982
BsuRI GGCC 2 cut(s) 215, 380
BtgI CCRYGG 1 cut(s) 759
BtsCI GGATG 1 cut(s) 721
BtsIMutI CAGTG 3 cut(s) 201, 961, 1162
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 1069
Cfr10I RCCGGY 1 cut(s) 380
Cfr13I GGNCC 2 cut(s) 214, 578
Csp6I GTAC 8 cut(s) 85, 161, 252, 438, 712, 793, 1021, 1373
CviAII CATG 8 cut(s) 625, 671, 827, 845, 932, 1025, 1030, 1070
CviQI GTAC 8 cut(s) 85, 161, 252, 438, 712, 793, 1021, 1373
DdeI CTNAG 6 cut(s) 14, 30, 193, 276, 617, 1358
DpnI GATC 6 cut(s) 142, 657, 704, 825, 984, 1091
DpnII GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
Eam1104I CTCTTC 3 cut(s) 61, 543, 1239
EarI CTCTTC 3 cut(s) 61, 543, 1239
Eco105I TACGTA 1 cut(s) 1376
Eco130I CCWWGG 2 cut(s) 814, 1085
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 578
Eco57I CTGAAG 1 cut(s) 1263
EcoRII CCWGG 1 cut(s) 363
EcoT14I CCWWGG 2 cut(s) 814, 1085
EcoT22I ATGCAT 1 cut(s) 933
ErhI CCWWGG 2 cut(s) 814, 1085
FaeI CATG 8 cut(s) 628, 674, 830, 848, 935, 1028, 1033, 1073
FalI AAGNNNNNCTT 4 cut(s) 10, 42, 1211, 1243
FatI CATG 8 cut(s) 624, 670, 826, 844, 931, 1024, 1029, 1069
FauNDI CATATG 1 cut(s) 1335
FbaI TGATCA 2 cut(s) 702, 823
FokI GGATG 1 cut(s) 708
FspBI CTAG 4 cut(s) 249, 396, 1080, 1166
GsaI CCCAGC 1 cut(s) 911
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 2 cut(s) 215, 380
HapII CCGG 2 cut(s) 381, 502
Hin1II CATG 8 cut(s) 628, 674, 830, 848, 935, 1028, 1033, 1073
HinfI GANTC 8 cut(s) 272, 285, 609, 777, 939, 1175, 1237, 1365
HpaII CCGG 2 cut(s) 381, 502
HphI GGTGA 3 cut(s) 491, 709, 1312
Hpy166II GTNNAC 4 cut(s) 85, 361, 440, 1303
Hpy188I TCNGA 4 cut(s) 271, 284, 647, 944
Hpy188III TCNNGA 7 cut(s) 60, 300, 659, 734, 1070, 1166, 1241
Hpy8I GTNNAC 4 cut(s) 85, 361, 440, 1303
HpyAV CCTTC 4 cut(s) 12, 599, 692, 922
HpyCH4III ACNGT 2 cut(s) 165, 760
HpyCH4IV ACGT 2 cut(s) 898, 1375
HpyCH4V TGCA 9 cut(s) 8, 170, 585, 920, 931, 1053, 1109, 1264, 1285
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 182, 386, 917, 1050, 1106
HpyF3I CTNAG 6 cut(s) 14, 30, 193, 276, 617, 1358
HpySE526I ACGT 2 cut(s) 898, 1375
Hsp92II CATG 8 cut(s) 628, 674, 830, 848, 935, 1028, 1033, 1073
Ksp22I TGATCA 2 cut(s) 702, 823
Kzo9I GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
LmnI GCTCC 2 cut(s) 72, 504
LweI GCATC 1 cut(s) 439
MaeI CTAG 4 cut(s) 249, 396, 1080, 1166
MaeII ACGT 2 cut(s) 898, 1375
MalI GATC 6 cut(s) 142, 657, 704, 825, 984, 1091
MboI GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
MboII GAAGA 8 cut(s) 18, 48, 150, 458, 560, 1048, 1256, 1269
MflI RGATCY 2 cut(s) 655, 982
MluCI AATT 8 cut(s) 630, 641, 726, 861, 873, 1013, 1101, 1341
MlyI GAGTC 4 cut(s) 603, 786, 1184, 1359
MmeI TCCRAC 2 cut(s) 810, 982
Mph1103I ATGCAT 1 cut(s) 933
MseI TTAA 6 cut(s) 245, 515, 531, 872, 1218, 1229
MslI CAYNNNNRTG 1 cut(s) 260
MspCI CTTAAG 1 cut(s) 1217
MspI CCGG 2 cut(s) 381, 502
MspR9I CCNGG 1 cut(s) 365
Mva1269I GAATGC 1 cut(s) 1266
MvaI CCWGG 1 cut(s) 365
MwoI GCNNNNNNNGC 6 cut(s) 128, 182, 386, 917, 1050, 1106
NdeI CATATG 1 cut(s) 1335
NdeII GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
NlaIII CATG 8 cut(s) 628, 674, 830, 848, 935, 1028, 1033, 1073
NlaIV GGNNCC 1 cut(s) 657
NsiI ATGCAT 1 cut(s) 933
NspI RCATGY 1 cut(s) 1033
NspV TTCGAA 1 cut(s) 76
PagI TCATGA 1 cut(s) 1069
PciI ACATGT 1 cut(s) 1029
PctI GAATGC 1 cut(s) 1266
PfeI GAWTC 4 cut(s) 272, 285, 939, 1237
PleI GAGTC 4 cut(s) 603, 785, 1183, 1359
PpsI GAGTC 4 cut(s) 603, 785, 1183, 1359
Ppu21I YACGTR 1 cut(s) 1376
PscI ACATGT 1 cut(s) 1029
Psp1406I AACGTT 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 907
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 214, 578
PsuI RGATCY 2 cut(s) 655, 982
RsaI GTAC 8 cut(s) 86, 162, 253, 439, 713, 794, 1022, 1374
RsaNI GTAC 8 cut(s) 85, 161, 252, 438, 712, 793, 1021, 1373
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 6 cut(s) 245, 515, 531, 872, 1218, 1229
Sau3AI GATC 6 cut(s) 140, 655, 702, 823, 982, 1089
Sau96I GGNCC 2 cut(s) 214, 578
SchI GAGTC 4 cut(s) 603, 786, 1184, 1359
ScrFI CCNGG 1 cut(s) 365
SfaNI GCATC 1 cut(s) 439
SfcI CTRYAG 1 cut(s) 186
SfuI TTCGAA 1 cut(s) 76
SinI GGWCC 1 cut(s) 578
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 2 cut(s) 374, 1217
SmoI CTYRAG 2 cut(s) 374, 1217
SnaBI TACGTA 1 cut(s) 1376
SpeI ACTAGT 1 cut(s) 248
Sse9I AATT 8 cut(s) 630, 641, 726, 861, 873, 1013, 1101, 1341
SsiI CCGC 1 cut(s) 1065
SspI AATATT 2 cut(s) 295, 567
SspMI CTAG 4 cut(s) 249, 396, 1080, 1166
StyD4I CCNGG 1 cut(s) 363
StyI CCWWGG 2 cut(s) 814, 1085
TaaI ACNGT 2 cut(s) 165, 760
TaiI ACGT 2 cut(s) 901, 1378
TaqI TCGA 3 cut(s) 76, 733, 775
TasI AATT 8 cut(s) 630, 641, 726, 861, 873, 1013, 1101, 1341
TatI WGTACW 3 cut(s) 84, 160, 437
TfiI GAWTC 4 cut(s) 272, 285, 939, 1237
Tru1I TTAA 6 cut(s) 245, 515, 531, 872, 1218, 1229
Tru9I TTAA 6 cut(s) 245, 515, 531, 872, 1218, 1229
TscAI CASTG 3 cut(s) 201, 968, 1162
TspDTI ATGAA 7 cut(s) 561, 613, 710, 1011, 1086, 1322, 1334
TspRI CASTG 3 cut(s) 201, 968, 1162
Vha464I CTTAAG 1 cut(s) 1217
VpaK11BI GGWCC 1 cut(s) 578
XapI RAATTY 2 cut(s) 641, 1013
XbaI TCTAGA 1 cut(s) 1165
XceI RCATGY 1 cut(s) 1033
XspI CTAG 4 cut(s) 249, 396, 1080, 1166
Zsp2I ATGCAT 1 cut(s) 933
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.